SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2118

Length: 3003 nt

UniGene Fasta

>sp_v3.0_unigene2118
TACACGAAAGAAGACTTGGCCCTCCTGTTCAATCCTACCGAATAAGTCAGCCATGCAGGTGGGAAAGGAGATTTCATAAGTTCCGGTTATCGATTTCCATTCCTCGTTGCATAGCCAGAGCAGAGGGCCGTCCATAGAGAAGGTAAGCCAAAGAAAATGGCCGATGTACAATTACCTGTGTCGAGGGGACCAAGATCTGTGACAGCACTGTTTGGAGAAGACTCCAACGATTCGCAGCAGCCATTATGGTTCAAAAAAGACGTCTTTCTGCAATCCGATTTCGAGAGCGAATCATACATTGCAGATCTGAGGCGCTTTATTGCCCTGGATACACTCAGAGCAGAGCTCCGGGGCCATCTCGCCGTGCTTAAGAATGAATTGGTGGAGTTGATCAACAGAGATTATGCGGATTTCGTTAATTTAACTACCAAGCTCGTGGATGTGGAAGGTGCAGTGCTAAGAATGCGAACGCCGTTAACGGAACTCAAGGCCAAAATAAGCTCCGTTAGGGACAGCATCGATTCCTCCCTTCTGGCTCTCCAAAACGGTTTACAGAGGCGGGCCGAGGCTTCTTCTTCCAGAGAAATACTTGAGCTTCTTCTCGACACCTCTCATGTCGTCTCAAAGGTAGAGAAACTGATGGTGGAATTGCAAAGCATGCCTGAAGAAGGACCCATTTCTCAAATTGAGCCAACTAGCAAGAGTTCCTTTAGCAATGGTACCATGGCAGAGATATCTGAGAATGGTGCAAATCTTGAGGAAACTCGAAGCATGCTTTTGGAACGAATTGCAAGTGAAATGAATCGCTTGAAGTTTTATATTGCTCGTGCACAGAACCTCCCCTTTCTTCAGAATATGGAGAAAAGGATTCAAAGTGCTAGTCTATTACTAGATAACAGCTTACGTCGCTGCTTTGAAATTGGCCTGGAGTGTCGTGATGAAAATGTCATTTATAATTGTCTTCGTGCATATGCTGCAATTGATAACACTAAAGCAGCAGAAGAAACTTTTCGGTCAACCATAGTTGCTCGATATATTCAACAGGTTATATCTTCAGCCCCTTCAAAGGATGTTGTTGGAGGTTCTGGTGATCAACTTGAGGACTACTATCAGCAAATCAAGAAATTTGTGGAGAAGGATTGCAAGTTTCTACTAGATATTGCTGCATCAGCAAATTCAGGTCTACATGTGTTTGACTTCTTAGCCAATTCAATTTTGAAGGAGGTTCTATCAGCCATTCAAAAAGGAAAACCTGGTGCATTCTCTCCTGGCAAGCCAGCAGAGTTTTTGATAAACTACAAATCAAGCATGGATTTTCTAACTTTTCTTGAAGGCAATTGCTTATCAAAATCTGCAGTTGGTAAATTCCGTTCACAGCCCGTTTACAATGATTTTGTGAAACAGTGGAATCTGGGAGCTTACTTTACACTTAGATTTCAGGAAATTGCTAGCGCTCTGGATTCTGCATTGGTGACAGCTAGCATCAGCCCTCTTAAGGATTCTCATCCTCAGCAAGATGGAGTTTTGGGCTTGACACTAAATCAAAGTGTTGTTCTTTTGGAATGCTTGAATCGATGTTGGCAAGATGGTGTTTATATCGCTGCAATAGCAGACAAATTCCTTCGTTTGACACTGCAGTTGCTTTCAAGGTACTCAACATGGTTATCAATAGGGCTTTCTACTCGTAAAAGGGGAAGTACAAGCTCCAACACTGGTGGTGAATGGGCTCTTGTTGCAACACCTGAGGATTTCATTTTTATGAGACGTGATGTAGACGTCCTTGTGAAAGAAATTAATGGTCCTTACCTGGAGCATGTAATCAGTTTGCTTGTGTCTTGTCCAAATGAAGTTCTTGCTCTAGTAAAACAAAGTGTTCTCCATAACTCACAAGCATTATTAGATTCTGTGCCTATAATAATGGATGTCATGATTGAAGCAGTGGTGGAAAAGTCTGTTGAGGTTTTGAGACAACTCAAGGGAATCACTGCAACATATAGAATGACAAACAAGCCACTCCCAGTTCGCCATTCACCATATGTCTCTGGTGTGCTTCAACCTTTGAAGGCATTCCTTGAGGGAGAGCGTGCCATATATTTGACGGAAAAGACAAGAAATGAACTTCTCCAGTCCGCAGCTGAGAGAATCACTACAAGATATAATGAGTTAGCATGGGAACTTGTGACAGTGGCAAGAAGGACAGAATCATCACTGCAACGTATTAGGCAGGGTGCTCAAAGAAGGGGAGGTGCTGGAACAGATTCCTCAGATGTCAATATCTCTGACACAGACAAGATCTGCATGCAGTTGTTTCTTGATGTTCAGGAATACGGACGCCGACTTGCAGCCCTTGGAATTGTTGCAGCTGAAATCCCTGACTATGCATCACTATGGCAGTGTGTTGCTCCTCCAGACAGGCAATCATCAATACAATTTTGATGTATGGTTAACAATTTTCCATACCCTTTTTCCCATGGGGCTTTGGATTGATGGTGAATGGGTACATTGTTAAGGCACTCCTTGCGCTAGGTCACTGGTTCAAATCCCCCGTGGGTGCTTAGCTATAAAAAAAAAAGATAAAAAAAACAATCTTCCATACCCTTTTGGAATGTCATTCACACCCTTTTGGAATGTCATTCACATATTGATGGAAGAATCAGCAGCAAGTGCATGAGCTTTTTGATTAGAATAGAACCTGCTCAATAGTGTTTTTCTTTTTGGAAGAATAATTGTGGAAAGGATCCCTTCTCTGATTTTTTAAAGTCTCCTTTATTTCAGAATGCAGGTCTTATTATGTTTGTGGGTGAAGGGCCATATTCATTCTTCCTAGAGTTAGAAATGTTTAACAGGGTTGATTGCGCTTATGTTGAATTCCAGACCAACTATTTTCAGCCTTGCTGATTGCTTTTTGTGATCAATGTGCAGTATCCATTTAGTCCACTTATGAATGAAGATTACTTGGTGAGTTCAGAGCAATATTAAGATTTTCCACACTTCAGTCCATTA

Ace file of the UniGene sp_v3.0_unigene2118

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COG2 multi-domain protein	-	-	7.0e-36	41%
FL-Next	tr=Conserved oligomeric Golgi complex component, putative; Ricinus communis (Castor bean).	-	-	0.0	63%

Source	Gene names
Sma3	AT4g24840; F6I7.50; GSVIVT00017925001; LOC_Os03g63250; OSJNBb0096M04.45; Os03g0849600; OsI_14326; OsJ_13370; PHYPADRAFT_106197; PHYPADRAFT_162850; POPTRDRAFT_806538; POPTRDRAFT_824748; RCOM_1506590; VITISV_007347;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	Golgi organization	GO:0007030	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	COG complex component, COG2	IPR009316	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24840.1	" FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro	58%
RefSeq	Arabidopsis thaliana	NP_567710.1	uncharacterized protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002318717.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RAH9

Fln msg:

Fln protein: MADVQLPVSRGPRSVTALFGEDSNDSQQPLWFKKDVFLQSDFESESYIADLRRFIALDTLRAELRGHLAVLKNELVELINRDYADFVNLTTKLVDVEGAVLRMRTPLTELKAKISSVRDSIDSSLLALQNGLQRRAEASSSREILELLLDTSHVVSKVEKLMVELQSMPEEGPISQIEPTSKSSFSNGTMAEISENGANLEETRSMLLERIASEMNRLKFYIARAQNLPFLQNMEKRIQSASLLLDNSLRRCFEIGLECRDENVIYNCLRAYAAIDNTKAAEETFRSTIVARYIQQVISSAPSKDVVGGSGDQLEDYYQQIKKFVEKDCKFLLDIAASANSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGKPAEFLINYKSSMDFLTFLEGNCLSKSAVGKFRSQPVYNDFVKQWNLGAYFTLRFQEIASALDSALVTASISPLKDSHPQQDGVLGLTLNQSVVLLECLNRCWQDGVYIAAIADKFLRLTLQLLSRYSTWLSIGLSTRKRGSTSSNTGGEWALVATPEDFIFMRRDVDVLVKEINGPYLEHVISLLVSCPNEVLALVKQSVLHNSQALLDSVPIIMDVMIEAVVEKSVEVLRQLKGITATYRMTNKPLPVRHSPYVSGVLQPLKAFLEGERAIYLTEKTRNELLQSAAERITTRYNELAWELVTVARRTESSLQRIRQGAQRRGGAGTDSSDVNISDTDKICMQLFLDVQEYGRRLAALGIVAAEIPDYASLWQCVAPPDRQSSIQF*

Protein Length: 761

Fln nts: TACACGAAAGAAGACTTGGCCCTCCTGTTCAATCCTACCGAATAAGTCAGCCATGCAGGTGGGAAAGGAGATTTCATAAGTTCCGGTTATCGATTTCCATTCCTCGTTGCATAGCCAGAGCAGAGGGCCGTCCATAGAGAAGGTAAGCCAAAGAAA_-_ATGGCCGATGTACAATTACCTGTGTCGAGGGGACCAAGATCTGTGACAGCACTGTTTGGAGAAGACTCCAACGATTCGCAGCAGCCATTATGGTTCAAAAAAGACGTCTTTCTGCAATCCGATTTCGAGAGCGAATCATACATTGCAGATCTGAGGCGCTTTATTGCCCTGGATACACTCAGAGCAGAGCTCCGGGGCCATCTCGCCGTGCTTAAGAATGAATTGGTGGAGTTGATCAACAGAGATTATGCGGATTTCGTTAATTTAACTACCAAGCTCGTGGATGTGGAAGGTGCAGTGCTAAGAATGCGAACGCCGTTAACGGAACTCAAGGCCAAAATAAGCTCCGTTAGGGACAGCATCGATTCCTCCCTTCTGGCTCTCCAAAACGGTTTACAGAGGCGGGCCGAGGCTTCTTCTTCCAGAGAAATACTTGAGCTTCTTCTCGACACCTCTCATGTCGTCTCAAAGGTAGAGAAACTGATGGTGGAATTGCAAAGCATGCCTGAAGAAGGACCCATTTCTCAAATTGAGCCAACTAGCAAGAGTTCCTTTAGCAATGGTACCATGGCAGAGATATCTGAGAATGGTGCAAATCTTGAGGAAACTCGAAGCATGCTTTTGGAACGAATTGCAAGTGAAATGAATCGCTTGAAGTTTTATATTGCTCGTGCACAGAACCTCCCCTTTCTTCAGAATATGGAGAAAAGGATTCAAAGTGCTAGTCTATTACTAGATAACAGCTTACGTCGCTGCTTTGAAATTGGCCTGGAGTGTCGTGATGAAAATGTCATTTATAATTGTCTTCGTGCATATGCTGCAATTGATAACACTAAAGCAGCAGAAGAAACTTTTCGGTCAACCATAGTTGCTCGATATATTCAACAGGTTATATCTTCAGCCCCTTCAAAGGATGTTGTTGGAGGTTCTGGTGATCAACTTGAGGACTACTATCAGCAAATCAAGAAATTTGTGGAGAAGGATTGCAAGTTTCTACTAGATATTGCTGCATCAGCAAATTCAGGTCTACATGTGTTTGACTTCTTAGCCAATTCAATTTTGAAGGAGGTTCTATCAGCCATTCAAAAAGGAAAACCTGGTGCATTCTCTCCTGGCAAGCCAGCAGAGTTTTTGATAAACTACAAATCAAGCATGGATTTTCTAACTTTTCTTGAAGGCAATTGCTTATCAAAATCTGCAGTTGGTAAATTCCGTTCACAGCCCGTTTACAATGATTTTGTGAAACAGTGGAATCTGGGAGCTTACTTTACACTTAGATTTCAGGAAATTGCTAGCGCTCTGGATTCTGCATTGGTGACAGCTAGCATCAGCCCTCTTAAGGATTCTCATCCTCAGCAAGATGGAGTTTTGGGCTTGACACTAAATCAAAGTGTTGTTCTTTTGGAATGCTTGAATCGATGTTGGCAAGATGGTGTTTATATCGCTGCAATAGCAGACAAATTCCTTCGTTTGACACTGCAGTTGCTTTCAAGGTACTCAACATGGTTATCAATAGGGCTTTCTACTCGTAAAAGGGGAAGTACAAGCTCCAACACTGGTGGTGAATGGGCTCTTGTTGCAACACCTGAGGATTTCATTTTTATGAGACGTGATGTAGACGTCCTTGTGAAAGAAATTAATGGTCCTTACCTGGAGCATGTAATCAGTTTGCTTGTGTCTTGTCCAAATGAAGTTCTTGCTCTAGTAAAACAAAGTGTTCTCCATAACTCACAAGCATTATTAGATTCTGTGCCTATAATAATGGATGTCATGATTGAAGCAGTGGTGGAAAAGTCTGTTGAGGTTTTGAGACAACTCAAGGGAATCACTGCAACATATAGAATGACAAACAAGCCACTCCCAGTTCGCCATTCACCATATGTCTCTGGTGTGCTTCAACCTTTGAAGGCATTCCTTGAGGGAGAGCGTGCCATATATTTGACGGAAAAGACAAGAAATGAACTTCTCCAGTCCGCAGCTGAGAGAATCACTACAAGATATAATGAGTTAGCATGGGAACTTGTGACAGTGGCAAGAAGGACAGAATCATCACTGCAACGTATTAGGCAGGGTGCTCAAAGAAGGGGAGGTGCTGGAACAGATTCCTCAGATGTCAATATCTCTGACACAGACAAGATCTGCATGCAGTTGTTTCTTGATGTTCAGGAATACGGACGCCGACTTGCAGCCCTTGGAATTGTTGCAGCTGAAATCCCTGACTATGCATCACTATGGCAGTGTGTTGCTCCTCCAGACAGGCAATCATCAATACAATTTTGA___TGTATGGTTAACAATTTTCCATACCCTTTTTCCCATGGGGCTTTGGATTGATGGTGAATGGGTACATTGTTAAGGCACTCCTTGCGCTAGGTCACTGGTTCAAATCCCCCGTGGGTGCTTAGCTATAAAAAAAAAAGATAAAAAAAACAATCTTCCATACCCTTTTGGAATGTCATTCACACCCTTTTGGAATGTCATTCACATATTGATGGAAGAATCAGCAGCAAGTGCATGAGCTTTTTGATTAGAATAGAACCTGCTCAATAGTGTTTTTCTTTTTGGAAGAATAATTGTGGAAAGGATCCCTTCTCTGATTTTTTAAAGTCTCCTTTATTTCAGAATGCAGGTCTTATTATGTTTGTGGGTGAAGGGCCATATTCATTCTTCCTAGAGTTAGAAATGTTTAACAGGGTTGATTGCGCTTATGTTGAATTCCAGACCAACTATTTTCAGCCTTGCTGATTGCTTTTTGTGATCAATGTGCAGTATCCATTTAGTCCACTTATGAATGAAGATTACTTGGTGAGTTCAGAGCAATATTAAGATTTTCCACACTTCAGTCCATTA

Fln Alignment:

Contig2118___SRGPRSVTALFGEDSNDSQQPLWFKKDVFLQSDFESESYIADLRRFIALDTLRAELRGHLAVLKNELVELINRDYADFVNLTTKLVDVEGAVLRMRTPLTELKAKISSVRDSIDSSLLALQNGLQRRAEASSSREILELLLDTSHVVSKVEKLMVELQSMPEEGPISQIEPTSKSSFSNGTMAEISENGANLEETRSMLLERIASEMNRLKFYIARAQNLPFLQNMEKRIQSASLLLDNSLRRCFEIGLECRDENVIYNCLRAYAAIDNTKAAEETFRSTIVARYIQQVISSAPSKDVVGGSGDQLEDYYQQIKKFVEKDCKFLLDIAASANSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGKPAEFLINYKSSMDFLTFLEGNCLSKSAVGKFRSQPVYNDFVKQWNLGAYFTLRFQEIASALDSALVTASISPLKDSHPQQDGVLGLTLNQSVVLLECLNRCWQDGVYIAAIADKFLRLTLQLLSRYSTWLSIGLSTRKRGSTSSNTGGEWALVATPEDFIFMRRDVDVLVKEINGPYLEHVISLLVSCPNEVLALVKQSVLHNSQALLDSVPIIMDVMIEAVVEKSVEVLRQLKGITATYRMTNKPLPVRHSPYVSGVLQPLKAFLEGERAI-YLTEKTRNELLQSAAERITTRYNELAWELVTVARRTESSLXXXXXXXXXXXXXXTDSSDVNISDTDKICMQLFLDVQEYGRRLAALGIVAAEIPDYASLWQCVAPPDRQSSIQF
B9RAH9______________SPAPRSATDLFS-DPLDSH-PLWFKPNLFLSPTFDSESYISELRTFVPFDTLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIEGFRGSVEGSLVALRNGLQQRSEAASAREILELLLDTFHVVSKVEKLIKELPSLPADWSNGDVNSTVKNAMSNGISLQSIENGTNLRETQSMLLERIASEMNRLKFYMAHSQNLPFIENMEKRIQSASLLLDASLGHCFVDGLEHRDENAIYNCLRAYAAIDNTNSAEEIFRTTIVAPLIHKIIPHGPSGTVAGVSGDGLENDYYQIKQCIEKDCKFLLEISSAENSGLHAFDFLANSILKEVLSAIQKGKPGAFSPGRPTEFLMNYKSSLDFLAHLEGYCPSRSAVAKFRTEVVYVEFMKQWNVGVYFSLRFQEIAGALDSALSATSLVPVENLHSGQTNLQDLTLKQSATLLESLKSCWREDVLILSCSDKFLRLSLQLLARYSNWLSSGIAARKMGNLGSNTVYEWAISAVPDDFVYIIHDLTCLATVVCGDYLDHILQLLSPSSADVLDLVKQSILQSGKSLNDLAPLAINAIIETLVNRAVEDLRQVKGISATYRMTNKPLPVRHSPYVSGVLHPLKAFLDGERAITYLTKETRKELLVGAATELTSRYYELAAETVSVARKTEVSLLRIRQGAQRRGGASSDVSDQSVTNSDKICMQLFLDIQEYGRSLAALGVEAADIPAYYSLWQCVAPPDRQNVISF

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
317			33	66	0.997452
619	10		90		0.90298
620		10		90	0.90298
621	10	90			0.90298
623		90		10	0.90298
628			88	11	0.923564
694	66		33		1.0
863	90			10	0.90298
864	90		10		0.90298
865	90		10		0.90298
973	11		88		0.923564
976			88	11	0.923564
1043		83		16	0.994512
1044	83		16		0.994512
1045			83	16	0.994512
1120		85	14		0.993533
1121	85			14	0.993533
1189		14		85	0.993533
2277	88		11		0.923564
2420	8		75	16	0.99999
2423	75			25	1.0
2424		16		83	0.999991
2428		81		18	0.999994
2429	81			18	0.999994
2432	81	18			0.999994
2435	81	18			0.999994
2438	11			88	0.923564
2442	11			88	0.923564
2459		20		80	0.995493
2465	25	75			0.996473
2548		87	12		0.992554
2940	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain