SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2111

Length: 1942 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2111

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb\|AAK64155.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85095.1\| unknown protein [Arabidopsis thaliana] gb\|AAD11993.2\| expressed protein [Arabidopsis thaliana] gb\|AEC09942.1\| tra	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Amino acid transporter	-	-	1.001e-21	-

Source	Gene names
Sma3	At2g39130; At2g41190; At3g09330; At5g02170; At5g02180; At5g02180/T7H20_230; At5g15240; B1370C05.10-1; F28P10.190; F3L24.20; F3L24.21; F8M21_130; GSVIVT00000651001; GSVIVT00017430001; GSVIVT00018153001; GSVIVT00020951001; GSVIVT00020953001; GSVIVT000209580

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41190.1	Transmembrane amino acid transporter family protein chr2:17167561-17170145 REVERSE LENGTH=536	58%
RefSeq	Arabidopsis thaliana	NP_030664.1	transmembrane amino acid transporter-like protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002311078.1	amino acid transporter [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A864

Fln msg: your sequence is longer than subject: 196 - 161

Fln protein: MSMADRTQFDKVLVVSFVLCVIFYGGMAVMGFLMFGQGTLSQITLNLPQQVVASKVAVWTTVINPFTKYALLLNPVAKSLEELLPLQNSTSEWWASTFIRTILVISTVGVALLVPFFGLMMSLIGSVLSMLLAVIMPCVCFLRIRGKNATKIQVVLCNLIILIGLLSVVIGTYSSVARMAENYSDRGVTNGFHSL*

Protein Length: 197

Fln nts: TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCAGAGGTTGCCTCCGGATACCCATTTCATCAATGGAGCGTGACAAGTCCACTATCGACTTGTTTGATGATAGTGGTGATGAGAGTGAAAAAGACATTGAAGAGCAGCACGAAGACGAGCAAATCCATGAAGATGACGATGAAGAGTGGCTCACAGTGGGGAAGGAGGAGGCTTTTCGCCATGACAATTGTTCTCGGCGATCCTTCCAGTCCACAGAATGGCCTCAGAGTTACAGAGAATCTATGGATACATACAGCATTGCTGCATCTCCATCGGTATCCTTTGGTTGGATGCAACGCCAACCAAGCTTTGAACTTCCATGTTCTCAAAAAGGTAGTCTATTAACACAGGATGCAGCTTACTGGGATTCCAGGAGATCATTACTGGAAAAGGAGGGACTTGAAGAGAAGCCAACATTTATACCAGTGCCTACAGAAGCGGAAAATAGAGATGGATTTGATAAAAGGGTTGTTGACAGAGATGCTGGACATGCTATAGAATATCGAGGACAAGGCTGCAGCTTTGTGCAAGCAGTATTTAATGGAGTGAATGTACTGGCTGGTGTAGGCCTTCTTTCTACCCCATATACTATTTTAGAAGCGGGTTGGATAAGTCTAGCATTATTGTTGCTGTTTGCCTTCATTTGCTGCTACACAGGTATTCTCTTACGTTACTGTTTTGAGAGCGAGGAAGGCATCTATACTTATCCAGATATTGGAGAGGTTGCTCTTGGGAGACTTGGTCGTTTTTTTATCTCTATCGTTTTGTACTGTGAACTCTATGCATACTGTGTAGAGTTTATCATACTGGAGGGAGACAATTTAACAAGGCTTTTTCCAGGTTTTCTATTTTGATATTGCTGGGACTGAACTGAGTTCTCTCTATTCATTTGGAATTTTAGCTGCAGTGATAGTGCTGCCGACTGTTTGGCTGAAAGATTTGCGCATTCTTTCTTATTTCTCAGCTGGTGGAGTGCTTGCAACTGTTTTGGTTATCTTCGCAGTTTTCTGGGTGGGAGCCATAGATGGGGTAGGTTTCCACCCCAGTGGTTCACTGGTGAATTGGTCCAACCTTCCTTTTGCAGTTGGTGTGTATGGGTTCTGTTACTCTGGCCATTCAGTCTTCCCAAACATCTAT_-_ATGTCGATGGCGGACCGCACTCAATTTGACAAAGTACTAGTTGTGAGTTTTGTTTTATGTGTTATATTTTACGGTGGGATGGCAGTCATGGGATTTCTCATGTTTGGTCAGGGTACACTTTCACAGATCACTTTGAACTTGCCACAACAAGTTGTTGCCTCAAAAGTTGCAGTCTGGACAACTGTGATCAATCCATTTACCAAATATGCTCTATTATTAAATCCTGTTGCAAAGAGCTTGGAGGAGTTGCTACCTTTGCAAAATTCAACTAGTGAATGGTGGGCTTCCACTTTTATACGGACAATCCTCGTCATCTCGACAGTTGGTGTTGCTCTTCTTGTGCCTTTCTTTGGGTTAATGATGTCCTTGATTGGTTCCGTCCTAAGCATGCTGTTGGCTGTGATAATGCCATGCGTCTGTTTTTTACGAATAAGGGGCAAGAATGCAACCAAAATCCAGGTTGTTCTCTGCAATCTTATTATCTTAATAGGCCTACTGAGTGTAGTTATTGGGACCTATTCTTCAGTAGCTAGAATGGCAGAAAATTATTCTGACAGAGGAGTCACAAACGGGTTCCATTCATTGTAA___TTGTTTTCATGCATTCAGAAAAGCACATGAGAAACTTCCAAGGAATCACGGTCCACATTTTTTAGTTGCAACCCTACAATCTAGGGGCGAATATTTATAAGCTTTAAAATATTAATCCGAACTTCTATGTATATAAATTTAAAAAAATTTCCCCGATATTTTATAAAGAAAATAT

Fln Alignment:

Contig2111___IFYGGMAVMGFLMFGQGTLSQITLNLPQQVVASKVAVWTTVINPFTKYALLLNPVAKSLEELLPLQNSTSEWWASTFIRTILVISTVGVALLVPFFGLMMSLIGSVLSMLLAVIMPCVCFLRIRGKNATKIQVVLCNXXXXXXXXXXXXXTYSSVARMAE
D5A864______________MIYGGIAVMGYMMFGNELESQVTLNLPRTLVASKVAIYITLINPFAKFSLTITPLATALEELLPSSDSWLVLW-GIGIRTLLVISTVAVALALPFFGYLMALIGSSLSCSVSIIIPSICYLKLFGASISRHEMSLIFIILILGIVTGIVGTYSSLQKIAD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1808		86	13		0.999973
1828	27			63	1.0
1842		75		25	1.0
1843		75	25		1.0
1882	14			85	0.993533
1883	85	14			0.993533
1886		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain