SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2102

Length: 1571 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2102

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Charged multivesicular body protein 4b, putative n=4 Tax=rosids RepID=B9RKD5_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	protein transport	GO:0015031	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29160.1	SNF7.1 SNF7 family protein chr4:14381019-14382342 FORWARD LENGTH=219	81%
RefSeq	Arabidopsis thaliana	NP_001078468.1	vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002308308.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYW6

Fln msg:

Fln protein: MMFSRLFGRPKEEANPISTLDKLNETLEMLEKKEKVLQKKIQAEVEKAKEFTRAKNKKAAIQCLKRKRLYEVQIEQLGNYQLRIHDQMIMLEGAKATTETVAALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGAAADFDEDELEAELEELEGAELEEQLLQPAVTAPAAQYTPASQQPIRPTPQQARPHNTAEEDELAALQAEMAL*

Protein Length: 224

Fln nts: GTGTATTAAATAGATCGACGCGACCGTGAAAAAAAAACAAATTACACGCTTTCCTTCTATTTTCAAATGCGTTAGATTATAATCTTCGTCGGTCATCTGAGTCGTGTAGGCGATCTCCTCGGGTCCTCCTTGCTCCCTCTCCCAATTCCAATTATTTGCTCTCCCTTTGCTTTTGCTTGGGTTCAACGCAAGTCCAGTTAATTCAAGAGGGTTGCGTTTGATTCGAGAGGGTTAATCAGATCAAAGGGCGCATAAGAAATTAGC_-_ATGATGTTCAGCAGACTTTTTGGGCGGCCAAAAGAGGAGGCGAATCCTATTTCGACCCTCGATAAACTCAATGAGACTCTAGAGATGCTTGAGAAGAAAGAAAAGGTCTTGCAAAAGAAGATCCAAGCAGAGGTTGAGAAGGCAAAGGAGTTCACTCGAGCAAAGAACAAAAAAGCGGCAATTCAATGCTTGAAAAGGAAGAGACTCTATGAAGTGCAAATAGAACAGCTTGGAAATTACCAGCTAAGAATCCATGATCAGATGATCATGTTGGAAGGTGCAAAGGCAACAACAGAAACTGTTGCTGCATTGAGGACTGGAGCATCAGCCATGAAAGCAATGCAGAAAGCAACAAATATTGATGATGTGGATAAGACCATGGATGAGATCAATGAACAGACAGAGAATATGAAGCAGATCCAAGAGGCCTTGGCAACACCTATTGGTGCAGCTGCAGATTTTGATGAGGATGAACTGGAAGCTGAGCTGGAAGAATTGGAAGGAGCAGAGTTGGAGGAGCAACTTCTCCAGCCTGCAGTTACTGCCCCAGCAGCGCAATATACTCCAGCTAGTCAACAACCCATTCGTCCAACACCCCAGCAGGCACGCCCACATAATACAGCTGAAGAAGATGAGCTTGCTGCACTGCAGGCAGAAATGGCATTGTAA___AGGGATTTGTGGATCTATGATGCTGGTACTATAAATATTTCGGTGTAATCTCTGTTTCTAGTGCTGTTTTTGGCCACCTGTCTTGGCTATGCATGAATGGGATTAAACGTGTCAAATAATTGTTGCATCTTGTCCTCATTAATCGATGATTATTCACAAAACAGAAAGACGTTTTATCCATAACAGATTACGATCAACACTAAGGAAAGATGTTTGCTTTGCAAGGGGTTAATTATGTATGCTAATATTTATACTCTAGATTTCTATTTTAGATTTTGATCATGGTGCAATGGAGTTGCTGTTGGAAGATCCTGTATTTTGGAGGTTCACAATTTAACTGTTTGGCGGGGCTCAGGATTCTCAAAGTGTCGTCCTGTAGGCCATGGATCCATATGAAGGAATACTCCATTATTCTGTCATGTCCTTTTAGGAATTTTGAGTTTGTAGTGCTGAGATTCTTCACTGCGTCTTGGCAATTTGTGTTACTGTATCATAATATCATCTGTCACTGCATTTTGTGTGAAAGTCTTTCACAGCCTGTGCACTTATTCTTATCATTAGAAGTACGATTCTTGGTTGTTTTATGGCCCTAACGTTTATGATCTATTTAATAATAATGACTATTTCAGAAGATTTGC

Fln Alignment:

Contig2102___MMFSRLFGRPKEEANPISTLDKLNETLEMLEKKEKVLQKKIQAEVEKAKEFTRAKNKKAAIQCLKRKRLYEVQIEQLGNYQLRIHDQMIMLEGAKATTETVAALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGXXXXXXXXXXXXXXXXXXXXXXXXXXXQPAVTAPAAQYTPASQQPIRPTPQQAR
A9NYW6______________MMFSRLFGRPKEEANPISTLDKLNETLEMLEKKEKVLQKKIQAEVEKARDFTRAKNKKAAIQCLKRKRLYEVQIEQLGNYQLRIHDQMIMLEGAKATTETVAALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGAAADFDEDELEAELEELEGADLEEQLLQPAVTAPAVQYTPASQQLARPTRQQAR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
688		75	25		0.996473
694	25		75		0.996473
705		85		14	0.993533
706	85		14		0.993533
707		85	14		0.993533
708		85	14		0.993533
728	10			90	0.90298
730			10	90	0.90298
732	90		10		0.90298
1150			7	92	0.999602
1151			7	92	0.999602
1543	66		33		1.0
1566		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain