SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2060

Length: 2101 nt

UniGene Fasta

>sp_v3.0_unigene2060
TGGAACTATTTAAACCTTTAATAGTTTTATGATCACATGGAGTGAAATAAGTATCTTGTAGGTTTTTGTCTTCGAAAACTGTGCCATTCTATGTTTAATCGACTGGTCATGGATGCTTACGAAGTACAGGCGATGATATTTGTCTGGTTTTGGTCTAAGCCTGTGTATAAGGTTTAGGATGAAAAATTAGTGAAATTTCTCCATACTGGATAAGAAATACAACAGTGAATGGATGAGGTTGACATTATTCCTTTTTCGTGAAACGATCCCAAGGTTGAATGAGGAGGTAGTTTAAAGTCTGATAAAGTATATATGATGAGAAATTAATCCCTTTTTCTGTAAAGCAAGCTATTCAGACTCGATGGATCCCAGAGCTTTTGTAAAAGTATCAGTGGGAGCTCTTGGATTAAAAATACCAGCTGCCTCAAGAACTGTAAGGAGCAGTGTTCAAAATTTGTCCTCTCCTTGTTTCTGTGAAATTCGGCTTAGAGGCTTTCCAGCACAGACAGCGTCAGTTCCCTTGATTTCACCCTCTGCCAGTGGCCCTGATCTTCACAGCATTGCAGCAAGCTTCTATTTAGAAGAAGCTGACTTGTGCAAGATGTCAACCTCCACCTGTTTCCGGTCCCCCAAAGCTTATTTGGAAATAGTAATCTTTACAGGAAGGCAGGAACCTTGCTGTGGCAGTAGCAGTAGTAAGCGGATTGGGACCTTCAGATTGCAAGTGGGACCAGAATGGAGAGAGGTAAGGACAGTGCAGCTTCACAATGGATGGACTAGCATTGGCAAAAGCAAGGCGCGGGGTGGAATTCCTGAGGCGGAGTTCCATGTAAGAGTCATGGTTGAGCCTGATCCCCGATTAATCTTTCAATTTGATGATGAAACTGTATTGAACCCCAGGATTGTGCAACTGCAAGGCAGTGTGAGGCAGCCTATTTTCAGCTGAAAATTCAGCCAAGGATCACGTGTCTCTCAACTTGATAGCATTAGCCACTGGTCGGGCTGGTTCTCAAAATGCTGTTAATGATAGCGAAAGAAGGGAACGGAAAGGATGGTTGGTTATGATTCATGACCTTTCTGGATCTGCAGTTGCTGCTGCTAAAATGGTAACCCCCTTTGTCCCATCTACAGGTTCTGATCATGTTTCTCGATCCAATCCCGGAGCATGGTTGATTTTGCGGCTAGATTCTTCTGGTGTTGACACCTGGCAGCCGTGGGGCAGGCTGGAAGCATGGAGAGAGCGAAGTGGGAAGGATTCTATTGGATGTAGGTTTCAGCTCGTTGCAGAAGGTGTTGGTGGTGTAGCAGGAATCAATGGTGGAATCGTTGTTTCAGAGATCCTTATTAATGCTCAGAAGGGTGGAGAGTTCCTGATTGACACATCAAAAGTGACATTTTTGGATTCTCCACTTCCAAGTCCTCATAGCAGTGGGGATTTTGCATTCAATTTTGGTCTGCAACTATTAGGAGGCTTTGTAATGAACTGTCATGTACAGGGTGAAGGTAAGAGCAGCAAGCCTATGGTGCAACTGTCTACGAGGCATATAGCGTGTGTTGCAGATGCCGCACTTTTCATGGCACTAACTGCAGCTGTAGACCTGAGCATTGAAGCGTGCAGGCCATTCAGTAAGAAGCTGAGGAGGGGTATTCGAAATTGAAAAGAGAATGCCTTCACAAACTGCTTACTTCCTCCATTTTCATTGACTTTTAGATATTGAATCTTTTCTGCAAACAGAACACCACCATATAATAATTTTCCTGGATCATGTATTATGATAGTAACTTCTTTACCATGGTCTGTCTATACACTAGCAATTTTGCCAGTTGCTGCTCAATTTTCATTACTGGCCAAATCAGTGTAGAAGTTCTGTGCAGGCAGTATATCACTGTACACTTTTCGGAGTGATCCTTGATAGTTGATTAACAGGTTATTAATTCTGATTAATGTGTCATATGCCCAGTGAATTTTCTGTGAAATCAATGCAGATTTTTCAGAAATTAAACAGGTAAGAAAAATATATGCTGGCGCATGCCTTTCTATACTGTAGTATTGACTTATCTAGGAATTTCCTAGTCATGTTTACTTGATATGGATAGACCT

Ace file of the UniGene sp_v3.0_unigene2060

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1005 domain containing protein	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	54%

Source	Gene names
Sma3	At1g10020; At1g50040; At3g19680; At4g29310; At5g17640; F2J10.8; GSVIVT00015022001; GSVIVT00016640001; GSVIVT00022959001; GSVIVT00038592001; K10A8_120; LOC_Os03g56220; OJ1118_D07.19; OJ1449_C01.2; OJ9990_A01.119; OSJNBb0094O03.10; Os01g0740400; Os03g077300

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1005	IPR010410	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17640.1	Protein of unknown function (DUF1005) chr5:5811047-5812429 REVERSE LENGTH=432	52%
RefSeq	Arabidopsis thaliana	NP_197266.1	uncharacterized protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002319218.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SDA9

Fln msg: Separated hits, possible frame ERROR between 1000 and 1026,

Fln protein: MDPRAFVKVSVGALGLKIPAASRTVRSSVQNLSSPCFCEIRLRGFPAQTASVPLISPSASGPDLHSIAASFYLEEADLCKMSTSTCFRSPKAYLEIVIFTGRQEPCCGSSSSKRIGTFRLQVGPEWREVRTVQLHNGWTSIGKSKARGGIPEAEFHVRVMVEPDPRLIFQFDDETVLNPRIVQLQGSVRQPIFS*KFSQGSRVSQLDSISHWxxxxxxxxxxDSERRERKGWLVMIHDLSGSAVAAAKMVTPFVPSTGSDHVSRSNPGAWLILRLDSSGVDTWQPWGRLEAWRERSGKDSIGCRFQLVAEGVGGVAGINGGIVVSEILINAQKGGEFLIDTSKVTFLDSPLPSPHSSGDFAFNFGLQLLGGFVMNCHVQGEGKSSKPMVQLSTRHIACVADAALFMALTAAVDLSIEACRPFSKKLRRGIRN*

Protein Length: 434

Fln nts: TGGAACTATTTAAACCTTTAATAGTTTTATGATCACATGGAGTGAAATAAGTATCTTGTAGGTTTTTGTCTTCGAAAACTGTGCCATTCTATGTTTAATCGACTGGTCATGGATGCTTACGAAGTACAGGCGATGATATTTGTCTGGTTTTGGTCTAAGCCTGTGTATAAGGTTTAGGATGAAAAATTAGTGAAATTTCTCCATACTGGATAAGAAATACAACAGTGAATGGATGAGGTTGACATTATTCCTTTTTCGTGAAACGATCCCAAGGTTGAATGAGGAGGTAGTTTAAAGTCTGATAAAGTATATATGATGAGAAATTAATCCCTTTTTCTGTAAAGCAAGCTATTCAGACTCG_-_ATGGATCCCAGAGCTTTTGTAAAAGTATCAGTGGGAGCTCTTGGATTAAAAATACCAGCTGCCTCAAGAACTGTAAGGAGCAGTGTTCAAAATTTGTCCTCTCCTTGTTTCTGTGAAATTCGGCTTAGAGGCTTTCCAGCACAGACAGCGTCAGTTCCCTTGATTTCACCCTCTGCCAGTGGCCCTGATCTTCACAGCATTGCAGCAAGCTTCTATTTAGAAGAAGCTGACTTGTGCAAGATGTCAACCTCCACCTGTTTCCGGTCCCCCAAAGCTTATTTGGAAATAGTAATCTTTACAGGAAGGCAGGAACCTTGCTGTGGCAGTAGCAGTAGTAAGCGGATTGGGACCTTCAGATTGCAAGTGGGACCAGAATGGAGAGAGGTAAGGACAGTGCAGCTTCACAATGGATGGACTAGCATTGGCAAAAGCAAGGCGCGGGGTGGAATTCCTGAGGCGGAGTTCCATGTAAGAGTCATGGTTGAGCCTGATCCCCGATTAATCTTTCAATTTGATGATGAAACTGTATTGAACCCCAGGATTGTGCAACTGCAAGGCAGTGTGAGGCAGCCTATTTTCAGCTGAAAATTCAGCCAAGGATCACGTGTCTCTCAACTTGATAGCATTAGCCACTGGTCxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATAGCGAAAGAAGGGAACGGAAAGGATGGTTGGTTATGATTCATGACCTTTCTGGATCTGCAGTTGCTGCTGCTAAAATGGTAACCCCCTTTGTCCCATCTACAGGTTCTGATCATGTTTCTCGATCCAATCCCGGAGCATGGTTGATTTTGCGGCTAGATTCTTCTGGTGTTGACACCTGGCAGCCGTGGGGCAGGCTGGAAGCATGGAGAGAGCGAAGTGGGAAGGATTCTATTGGATGTAGGTTTCAGCTCGTTGCAGAAGGTGTTGGTGGTGTAGCAGGAATCAATGGTGGAATCGTTGTTTCAGAGATCCTTATTAATGCTCAGAAGGGTGGAGAGTTCCTGATTGACACATCAAAAGTGACATTTTTGGATTCTCCACTTCCAAGTCCTCATAGCAGTGGGGATTTTGCATTCAATTTTGGTCTGCAACTATTAGGAGGCTTTGTAATGAACTGTCATGTACAGGGTGAAGGTAAGAGCAGCAAGCCTATGGTGCAACTGTCTACGAGGCATATAGCGTGTGTTGCAGATGCCGCACTTTTCATGGCACTAACTGCAGCTGTAGACCTGAGCATTGAAGCGTGCAGGCCATTCAGTAAGAAGCTGAGGAGGGGTATTCGAAATTGA___AAAGAGAATGCCTTCACAAACTGCTTACTTCCTCCATTTTCATTGACTTTTAGATATTGAATCTTTTCTGCAAACAGAACACCACCATATAATAATTTTCCTGGATCATGTATTATGATAGTAACTTCTTTACCATGGTCTGTCTATACACTAGCAATTTTGCCAGTTGCTGCTCAATTTTCATTACTGGCCAAATCAGTGTAGAAGTTCTGTGCAGGCAGTATATCACTGTACACTTTTCGGAGTGATCCTTGATAGTTGATTAACAGGTTATTAATTCTGATTAATGTGTCATATGCCCAGTGAATTTTCTGTGAAATCAATGCAGATTTTTCAGAAATTAAACAGGTAAGAAAAATATATGCTGGCGCATGCCTTTCTATACTGTAGTATTGACTTATCTAGGAATTTCCTAGTCATGTTTACTTGATATGGATAGACCT

Fln Alignment:

Contig2060___MDPRAFVKVSVGALGLKIPAASRTVRSSVQNLSSPCFCEIRLRGFPAQTASVPLISPSASGPDLHSIAASFYLEEADLCKMSTSTCFRSPKAYLEIVIFTGRQEPCCGSSSSK-RIGTFRLQVGPEWREVRTVQLHNGWTSIGKSKARGGIPEAEFHVRVMVEPDPRLIFQFDDETVLNPRIVQLQGSVRQPIFS*KFSQGSRVSQLDSIS-HWSxxxxxxxxxDSERRERKGWLVMIHDLSGSAVAAAKMVTPFVPSTGSDHVSRSNPGAWLILRLDSSGVDTWQPWGRLEAWRERSGKDSIGCRFQLXXXXXXXXXXXXXXXXXSEILINAQKGGEFLIDTSK-VTFLDSPLPSPHSSGDFAFNFGLQLLGGFVMNCHVQGEGKSSKPMVQLSTRHIACXXXXXXXXXXXXXXXLSIEACRPFSKKLRRGIRN
B9SDA9______________MDPQAFIRLSIGSLGLRIPGTAINSTKSGIHTFSPCSCEIRLRGFPVQTTSVPFVSSPEAAPDIHSISSSFYLEESDLKALLEPGCFYTHHACLEIVVFTGRKGSHCGVGIKKQQIGTFKLEVGPEWGEGKPVILFNGWIGIGKNKQESKKPGAELHLRVKLDPDPRYVFQFEDVTTSSPQIVQLQGSIRQPIFSCKFSR-DRVPQVDPLSIYWSxxxxxxxxxETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVAKSNPGAWLIVRPDMCRPESWQPWGKLEAWRERGIRDSICCRFHL-----LSESQEGGEVLMSEIFMNAEKGGEFFIDTDRQMQAAATPIPSPQSSGDFS---GLGPAGGFVMSCRVQGEGKHSKPLVQLAMRHVTCVEDAAIFMALAAAVDLSIVACRPFRRRLRRGSRH

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
295	50		50		1.0
362	20		80		0.995493
787	14		85		0.993533
803		16	83		0.994512
1188	87		12		0.992554
1360	10		90		0.90298
1361		10	90		0.90298
1362			90	10	0.90298
1363		10		90	0.90298
1364	10		90		0.90298
1365	10		90		0.90298
1550	23		76		1.0
1578		15		84	0.999986
1629		21	78		1.0
1712	88		11		0.923564
1714	88			11	0.923564
1769	88		11		0.923564
1875	50		50		1.0
1879	11		88		0.923564
1880		88		11	0.923564
1881	88		11		0.923564
1883			11	88	0.923564
1908			77	22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain