SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2053

Length: 1966 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene2053
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGGTTCGTCACAAATTATGCCCACGAGCCTAGATCAGGAGGAAGAGTACGATGGCAATGGGGAAGCTGAAAAAGGGGAGCCCGCGGGGTTCGAATCGTGGTGGATGCTGTGTTAGTTTGATTGCTGCGGGGCTAGTGGCCTCTGGATTTTTGTATGTGGTCATGGAGTTTAGAACAAAAGATTGGGCCTGTAATTCGGCTGAAGGGGCCCTGGGGATGCCTGGGAACGGAGAGTTTGGGAAGAATTCTTGGTCTGGAGACCTCAGAACCCTGGAAGTTGCCTGGAATCGGCTCTGCTTTGGACGACCCGTTGCTTCAGAGAAGCTGCGCCTCGCGGTTTTTTCCAAGAAGTGGCCCGTCGGTGGAGTCCCTGGCGGAATGGAGCGCCACGCTTTTACTCTATACAGGGCCCTAGCGGCGAGAGGCCACGAGATCCACGTGTATACAGCAACGGGCAACGGTGCCGCGCGTGAAGACGTGGTCGAAGGCGGGCTCCGAGTTCATTTTGTGCAGAACGAAGCCGGGCGATTGGAGTGGTCCCGGGCCTGGAAACTTCTGGAGAGCTCCGGTATTCAATTCGATGCAGTCCATTCTGAAAGCGTAGCGTTGCCACACTGGAAGGCAAAAGATGTCCCGAATCTGGCCGTGACGTGGCACGGAATTGCGTACGAAGCCCTTCACTCGGAGCTCTTGCAGGATCTTCTCAGAAAGCCCGGGGAGATTCGTTCGCCGGAAACGGAAAAGTCGATGGCTGAACGGATTCCAAGACTCCTGGACGAGATCAGGTTTTTTCCGAGCTACAGACAACATGTACCGATAAGTGATTACGCCGGCGATGTTCTGCTGAACATTTATCAGATTCCGACGGAAAACGTTCACATAATTCTCAACGGCATCGACGAGCAAAACTTCCGGCCAAACCCGGCACTGGGCGCTGAATTCCGCCGGAAAATCGGAGTTCCGGCAAACGCCACCATGGTTATGGGCGTGGCGGGAAGGCTGGTGCGAGACAAAGGGCACCCGATTCTTTACGAGGCGTTTTCTCAGATCAGCAAAGAGAATCCCGGCGTTTATTTGCTGGTCGCCGGATCCGGGCCCTGGGAGGACCGTTACAGAGAATTGGCGCCCAATGTAAAGGCCCTCGGTGCCATGGATCCGTCCGATCTTGCCGCTTTTTACAACGCGCTGGACATTTTCTTGAATCCTACGTTGCGCCCCCAGGGCCTCGATCTGACTCTCATGGAAGCCATGCACTGCGGGAAGCCTCTGCTGGCCAGCCGTTTCCCCAGCATAACGCGGAGCGTGATTGTGAGCCACGATTACGGCTACACTTTCGCCCCGAACGTGGCTTCCCTTATCTCTACCCTGCGCTCCGCCATAAGCGACGGACAGCGGGAGCTTCAGAGGAAAGGGCAGTTCTGCAGGGACTACGCGGCTAGCATGTTCGCGGCCACGAAGATGGCCTCGGCCTACGAGCGCCTCTTTCTCTGCATGAAAAACGAAGCCTATTGTCGTTACCCGTTGCCCACCGATTGCGCGCCATGATTGCAGCAATCCGGTGATCCAATTCTTTGCTCATGGTTCCCACTTCCGACCAATAATGGAAAACGACTGCAACACCATTCAAAGCCGGCGGGCGCAGAATTTTTTAAAGTTTATTCTTCTGATCCGGCCAAGGACGAATCGCTGAATTATTTTCAGCAGCGGATTTGTCGCTTGGCCTTACGTAAGCAGAATTGATTTTATTGTGTTTTATCCAGACGGACAAATTGACGGACACATGACTAATTTTTATTTTTAATTTTTTTAACTAACTTTGATACGGTGCAAAAATCATAACAGTTATCATATTACTAGATTAAATAGATATTGTTCAGATCATTCAAATGCCAAAGTGCCAAGATCTTCTTGCTCTGAAATGAAATGAATG

Ace file of the UniGene sp_v3.0_unigene2053 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase, CAZy family GT4 n=1 Tax=Selaginella moellendorffii RepID=D8QWP9_SELML	-	-	0.0	61%
FL-Next	tr=Glycosyltransferase, CAZy family GT4; Selaginella moellendorffii (Spikemoss).	-	-	0.0	61%
Sma3	Glycosyltransferase, putative	-	-	4.353e-10	-

Source	Gene names
Sma3	AT4g19460; At1g73160; F24J7.20; F3N23.36; GSVIVT00001219001; GSVIVT00001220001; GSVIVT00007609001; GSVIVT00024213001; OSJNBa0016C11.30; OSJNBb0006H05.7; OSJNBb0032K15.26; Os01g0653200; OsI_03097; OsI_29361; OsJ_02849; OsJ_27456; PHYPADRAFT_134954; PHYPADR

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity	GO:0016740	Molecular Function	0.0	-
Sma3	biosynthetic process	GO:0009058	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	F-box associated domain, type 1	IPR006527	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73160.1	UDP-Glycosyltransferase superfamily protein chr1:27506534-27507994 FORWARD LENGTH=486	56%
RefSeq	Arabidopsis thaliana	NP_177459.1	UDP-glycosyltransferase-like protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002317369.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8QWP9

Fln msg:

Fln protein: MAMGKLKKGSPRGSNRGGCCVSLIAAGLVASGFLYVVMEFRTKDWACNSAEGALGMPGNGEFGKNSWSGDLRTLEVAWNRLCFGRPVASEKLRLAVFSKKWPVGGVPGGMERHAFTLYRALAARGHEIHVYTATGNGAAREDVVEGGLRVHFVQNEAGRLEWSRAWKLLESSGIQFDAVHSESVALPHWKAKDVPNLAVTWHGIAYEALHSELLQDLLRKPGEIRSPETEKSMAERIPRLLDEIRFFPSYRQHVPISDYAGDVLLNIYQIPTENVHIILNGIDEQNFRPNPALGAEFRRKIGVPANATMVMGVAGRLVRDKGHPILYEAFSQISKENPGVYLLVAGSGPWEDRYRELAPNVKALGAMDPSDLAAFYNALDIFLNPTLRPQGLDLTLMEAMHCGKPLLASRFPSITRSVIVSHDYGYTFAPNVASLISTLRSAISDGQRELQRKGQFCRDYAASMFAATKMASAYERLFLCMKNEAYCRYPLPTDCAP*

Protein Length: 499

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGGGTTCGTCACAAATTATGCCCACGAGCCTAGATCAGGAGGAAGAGTACG_-_ATGGCAATGGGGAAGCTGAAAAAGGGGAGCCCGCGGGGTTCGAATCGTGGTGGATGCTGTGTTAGTTTGATTGCTGCGGGGCTAGTGGCCTCTGGATTTTTGTATGTGGTCATGGAGTTTAGAACAAAAGATTGGGCCTGTAATTCGGCTGAAGGGGCCCTGGGGATGCCTGGGAACGGAGAGTTTGGGAAGAATTCTTGGTCTGGAGACCTCAGAACCCTGGAAGTTGCCTGGAATCGGCTCTGCTTTGGACGACCCGTTGCTTCAGAGAAGCTGCGCCTCGCGGTTTTTTCCAAGAAGTGGCCCGTCGGTGGAGTCCCTGGCGGAATGGAGCGCCACGCTTTTACTCTATACAGGGCCCTAGCGGCGAGAGGCCACGAGATCCACGTGTATACAGCAACGGGCAACGGTGCCGCGCGTGAAGACGTGGTCGAAGGCGGGCTCCGAGTTCATTTTGTGCAGAACGAAGCCGGGCGATTGGAGTGGTCCCGGGCCTGGAAACTTCTGGAGAGCTCCGGTATTCAATTCGATGCAGTCCATTCTGAAAGCGTAGCGTTGCCACACTGGAAGGCAAAAGATGTCCCGAATCTGGCCGTGACGTGGCACGGAATTGCGTACGAAGCCCTTCACTCGGAGCTCTTGCAGGATCTTCTCAGAAAGCCCGGGGAGATTCGTTCGCCGGAAACGGAAAAGTCGATGGCTGAACGGATTCCAAGACTCCTGGACGAGATCAGGTTTTTTCCGAGCTACAGACAACATGTACCGATAAGTGATTACGCCGGCGATGTTCTGCTGAACATTTATCAGATTCCGACGGAAAACGTTCACATAATTCTCAACGGCATCGACGAGCAAAACTTCCGGCCAAACCCGGCACTGGGCGCTGAATTCCGCCGGAAAATCGGAGTTCCGGCAAACGCCACCATGGTTATGGGCGTGGCGGGAAGGCTGGTGCGAGACAAAGGGCACCCGATTCTTTACGAGGCGTTTTCTCAGATCAGCAAAGAGAATCCCGGCGTTTATTTGCTGGTCGCCGGATCCGGGCCCTGGGAGGACCGTTACAGAGAATTGGCGCCCAATGTAAAGGCCCTCGGTGCCATGGATCCGTCCGATCTTGCCGCTTTTTACAACGCGCTGGACATTTTCTTGAATCCTACGTTGCGCCCCCAGGGCCTCGATCTGACTCTCATGGAAGCCATGCACTGCGGGAAGCCTCTGCTGGCCAGCCGTTTCCCCAGCATAACGCGGAGCGTGATTGTGAGCCACGATTACGGCTACACTTTCGCCCCGAACGTGGCTTCCCTTATCTCTACCCTGCGCTCCGCCATAAGCGACGGACAGCGGGAGCTTCAGAGGAAAGGGCAGTTCTGCAGGGACTACGCGGCTAGCATGTTCGCGGCCACGAAGATGGCCTCGGCCTACGAGCGCCTCTTTCTCTGCATGAAAAACGAAGCCTATTGTCGTTACCCGTTGCCCACCGATTGCGCGCCATGA___TTGCAGCAATCCGGTGATCCAATTCTTTGCTCATGGTTCCCACTTCCGACCAATAATGGAAAACGACTGCAACACCATTCAAAGCCGGCGGGCGCAGAATTTTTTAAAGTTTATTCTTCTGATCCGGCCAAGGACGAATCGCTGAATTATTTTCAGCAGCGGATTTGTCGCTTGGCCTTACGTAAGCAGAATTGATTTTATTGTGTTTTATCCAGACGGACAAATTGACGGACACATGACTAATTTTTATTTTTAATTTTTTTAACTAACTTTGATACGGTGCAAAAATCATAACAGTTATCATATTACTAGATTAAATAGATATTGTTCAGATCATTCAAATGCCAAAGTGCCAAGATCTTCTTGCTCTGAAATGAAATGAATG

Fln Alignment:

Contig2053___WSGDLRTLEVAWNRLCFGRPVASEKLRLAVFSKKWPVGGVPGGMERHAFTLYRALAARGHEIHVYTATGNGAAREDVV---------EGGLRVHFVQ-NEAGRLEWSRAW-KLLESSGIQ---FDAVHSESVALPHWKAKDV-PNLAVTWHGIAYEALHSELLQDLLRKPGEIRSPETEKSMAERIPRLLDEIRFFPSYRQHVPISDYAGDVLLNIYQIPTENVHIILNGIDEQNFRPNPALGAEFRRKIGVPANATMVMGVAGRLVRDKGHPILYEAFSQISKENPGVYLLVAGSGPWEDRYRELAPNVKALGAMDPSDLAAFYNALDIFLNPTLRPQGLDLTLMEAMHCGKPLLASRFPSITRSVIVSHDYGYTFAPNVASLISTLRSAISDGQRELQRKGQFCRDYAASMFAATKMASAYERLFLCMKNEAYCRYPLPTDC
D8QWP9______________WRGDLRQMEAAWNRLCFG-PI-QERLRIALFVKKWPVGGVPGGLERHALTLHRNLAARGHEIHVYTSAAAGSDNPEELLDDQQDHGERGLLHVHFSRPNAGGGFDYHRAWDQFLADNSTHPGGFDIVHSESVALPHWKAQLLGSNLAASWHGIGYEIIHSDLVQDLVRKPGEPRSADLQRSLGERLTRVADEIKFFPSYRHHVATSDYVGDVLQTIYEIPLRNVHTILNGVDESRFRPSLDAGSAFRRKYGVPVNASLVFGAAGRLVRDKGHPLLFEAFSRIAARHPGVFLLVAGHGPWGDRYRELAPNAKTLGPMDPAHLADFYNALDVFVNPTLRSQGLDHTLLEAMQCGKPLLATHFSSITWSVVVSSDFGHTFSPNVDSLEQAMEAVIAQGRDTMRRKGELCRDYASLMFTATKMGAAYERLFLCMKNESYCQYPLPGDC

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1451		75	25		0.996473
1568	25		75		0.996473
1715		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain