SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2046

Length: 2193 nt

UniGene Fasta

>sp_v3.0_unigene2046
TGCTTAAGCAGTGGTATCAACGCAGAGAACGCGGCGGTCACTCAATTTTATATTTTGCAGTTGAATCTCTGTGTTTTATTGATCTGAGATTCTTTTGAATCCCATTGGGTTTTTTTTTAAATCATGGGATCCTCCTAACTGGAGATTCTGTTAGCTACAGTTGGCTGGCTGCATGCCATAGAGAGACAGAGAGAGCAAAACGATTTATAAACAAGAAACATTATGGCCTTGGCCGTGGGATTGTGAATCTTCTCTGCTGTTATATTTGTTTTTGGAGCAGGTCAACAGACAATGTTGTGCAGTCTCGATTGTGTTTTCCTACTGTGTTAGTTTGAGATGAAGGCATCAAGAATCAGATGAATCAAGAGAGCAATGAACTGAGAATCAGTACAGAGATGTTACAATAGTTGATCTGGATGCTGGCTTCTATCTGCCCACCATTGTCCTAAAATTTGGAATCTCTCATCACCCATAACAAAGGTGCAGACCACAGAGATGGATTACAGATTTGATGAAGTGGAGTCTCGTTTAAGTGCAGCAGGGAGTGATGCTAATGACATCCGTGCAGCAGGGAGTGATGGTAATGGCATCCTCAAAGATGGTCGCAGCCCTGGAACGTTAGTCACGTCCCACAGCCATGACGATGATGGTCGGGGAAAACGAAAAGGGAATGTATGGACAGCTTCTTGCCATGTGATAACAGCTGTTATCGGGTCTGGAGTGCTATCTTTGGCATGGAGTATGGCTCAGCTTGGATGGGTGGTAGGGCCAGTTGTTATCATAGGTTTTTCAGTTGTGACATATTATACTTCACTTTTACTTGCAGACTGTTATCGTTCACCAGACCCAGTTACTGGACAGCGTAACTATACATACAAGGATGCTGTCAAAGCCAATCTGGGTGGTGCACAAGTAATTTTATGTGGTTTTATACAGTACATAAATCTTCTAGGGACAACAATCGGATATACCATCACTGCTTCAATCAGCCTGGTGGCTATTGAGCGATCAAACTGCTTTCATGAGAAAGGGAGGGACGCTCCTTGCCACATCTCTAACAACTTGTACATGGCCATTTTTGGGCTAGCACAGATTATATTTTCACAGATACCAAACCTGCACAAAGTGTGGTGGTTGTCAATAGTGGCAGCGGTCATGTCAGTTTCATATTCAGTAATTGGGTTAGGCCTTGCAATAGGAAAAGCTACAGAAAAAAACCATTCTTATGGTTCTTTGGAGGGAGTAGGGATTGGAGAGCTTTTCCAGGATGTAGATCAAACTTGGCATGTGTTTCAGGCCCTTGGCAATGTTGCATTTGCATATTCTTTCTCCATGATTCTCATTGAGATACAGGATACTATAAAATCACCACCAGCAGAGAACAAAACCATGAAAAAAGCAACAACTATTGGAGTAATAGTCACCACTCTCTTCTACGTGTCTGTAGGTTCTGTAGGTTATGCAGCCTTTGGAAACCATGCTCCTGGAAACCTTCTCACAGGCTTTGGATTTTACGAGCCATATTGGCTGGTTGACATTGGAAATATCTGCATTGTAATCCACCTGGTTGGTGCTTATCAGATATTTGCCCAACCATTGTTTGCATTCGTTGAGGAATGGTGCTCTGATACATGGACCAAAAGCAGTTTCATACACAAGAAGTATACAGTTAAATTTCCAGGCTATGGGTCATTGAATCTCACCCTTTTTTGTCTGGTGTGGAGGACCTGTTATGTGATTTTTACGACTACGGTGTCCATGATTCTTCCTTTCTTCAATGACGTTGTGGGCATTTTGGGAGCGTTGGCCTTCTTTCCACTAACTGTTTATTTCCCAGTAGAAATGTACATAGTTCAATACAAGGTTCCACGATGGAGCTGTAAGTGGGTGGTTTTACGGTTGCTGAGCATAACATGCTTTGTTATCTCCTTGGTTGCCTTGGTTGGCTCAGTTGCAGGGGTCATAAAAGCCCTGCGTGGCTACCAGCCTTTCAAAACCAGTATTAGATGGAAGGTTTTAAAAACTATCATAGTTCTGCAGTGTAGCATAAAAAATAGATGGGGAAGAAGAATAGCGACTATGAATATCAATTAAAATTTCAGTGTTCCATATGGATAGGAATAAACACTATCCTTGGAATAGCAACTGCCAATATGTAGGTTGTTTGGTTATTGAATTTAGTAATTAATGTGA

Ace file of the UniGene sp_v3.0_unigene2046

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H4M6_POPTR	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Sma3	Amino acid permease	-	-	-

Source	Gene names
Sma3	24K23.18; AAP; AAP1; AAP2; AAP3; AAP4; AAP5; AAP6; AAPA; AAPB; AAPC; AT5G23810; At1g10010; At1g44100; At1g58360; At1g77380; At5g09220; At5g23810; At5g49630; At5g63850; B1065E10.27; B1370C05.25; F19C14.3; F2P24.9; GSVIVT00008237001; GSVIVT00012093001; GSVI

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	-
Sma3	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	acidic amino acid transport	GO:0015800	Biological Process	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-
Sma3	neutral amino acid transport	GO:0015804	Biological Process	-
Sma3	aspartate transport	GO:0015810	Biological Process	-
Sma3	tryptophan transport	GO:0015827	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77380.1	AAP3, ATAAP3 amino acid permease 3 chr1:29075201-29077252 REVERSE LENGTH=476	60%
RefSeq	Arabidopsis thaliana	NP_177862.1	amino acid permease 3 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002307053.1	amino acid permease, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7Z1

Fln msg:

Fln protein: MDYRFDEVESRLSAAGSDANDIRAAGSDGNGILKDGRSPGTLVTSHSHDDDGRGKRKGNVWTASCHVITAVIGSGVLSLAWSMAQLGWVVGPVVIIGFSVVTYYTSLLLADCYRSPDPVTGQRNYTYKDAVKANLGGAQVILCGFIQYINLLGTTIGYTITASISLVAIERSNCFHEKGRDAPCHISNNLYMAIFGLAQIIFSQIPNLHKVWWLSIVAAVMSVSYSVIGLGLAIGKATEKNHSYGSLEGVGIGELFQDVDQTWHVFQALGNVAFAYSFSMILIEIQDTIKSPPAENKTMKKATTIGVIVTTLFYVSVGSVGYAAFGNHAPGNLLTGFGFYEPYWLVDIGNICIVIHLVGAYQIFAQPLFAFVEEWCSDTWTKSSFIHKKYTVKFPGYGSLNLTLFCLVWRTCYVIFTTTVSMILPFFNDVVGILGALAFFPLTVYFPVEMYIVQYKVPRWSCKWVVLRLLSITCFVISLVALVGSVAGVIKALRGYQPFKTSIRWKVLKTIIVLQCSIKNRWGRRIATMNIN*

Protein Length: 534

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGAACGCGGCGGTCACTCAATTTTATATTTTGCAGTTGAATCTCTGTGTTTTATTGATCTGAGATTCTTTTGAATCCCATTGGGTTTTTTTTTAAATCATGGGATCCTCCTAACTGGAGATTCTGTTAGCTACAGTTGGCTGGCTGCATGCCATAGAGAGACAGAGAGAGCAAAACGATTTATAAACAAGAAACATTATGGCCTTGGCCGTGGGATTGTGAATCTTCTCTGCTGTTATATTTGTTTTTGGAGCAGGTCAACAGACAATGTTGTGCAGTCTCGATTGTGTTTTCCTACTGTGTTAGTTTGAGATGAAGGCATCAAGAATCAGATGAATCAAGAGAGCAATGAACTGAGAATCAGTACAGAGATGTTACAATAGTTGATCTGGATGCTGGCTTCTATCTGCCCACCATTGTCCTAAAATTTGGAATCTCTCATCACCCATAACAAAGGTGCAGACCACAGAG_-_ATGGATTACAGATTTGATGAAGTGGAGTCTCGTTTAAGTGCAGCAGGGAGTGATGCTAATGACATCCGTGCAGCAGGGAGTGATGGTAATGGCATCCTCAAAGATGGTCGCAGCCCTGGAACGTTAGTCACGTCCCACAGCCATGACGATGATGGTCGGGGAAAACGAAAAGGGAATGTATGGACAGCTTCTTGCCATGTGATAACAGCTGTTATCGGGTCTGGAGTGCTATCTTTGGCATGGAGTATGGCTCAGCTTGGATGGGTGGTAGGGCCAGTTGTTATCATAGGTTTTTCAGTTGTGACATATTATACTTCACTTTTACTTGCAGACTGTTATCGTTCACCAGACCCAGTTACTGGACAGCGTAACTATACATACAAGGATGCTGTCAAAGCCAATCTGGGTGGTGCACAAGTAATTTTATGTGGTTTTATACAGTACATAAATCTTCTAGGGACAACAATCGGATATACCATCACTGCTTCAATCAGCCTGGTGGCTATTGAGCGATCAAACTGCTTTCATGAGAAAGGGAGGGACGCTCCTTGCCACATCTCTAACAACTTGTACATGGCCATTTTTGGGCTAGCACAGATTATATTTTCACAGATACCAAACCTGCACAAAGTGTGGTGGTTGTCAATAGTGGCAGCGGTCATGTCAGTTTCATATTCAGTAATTGGGTTAGGCCTTGCAATAGGAAAAGCTACAGAAAAAAACCATTCTTATGGTTCTTTGGAGGGAGTAGGGATTGGAGAGCTTTTCCAGGATGTAGATCAAACTTGGCATGTGTTTCAGGCCCTTGGCAATGTTGCATTTGCATATTCTTTCTCCATGATTCTCATTGAGATACAGGATACTATAAAATCACCACCAGCAGAGAACAAAACCATGAAAAAAGCAACAACTATTGGAGTAATAGTCACCACTCTCTTCTACGTGTCTGTAGGTTCTGTAGGTTATGCAGCCTTTGGAAACCATGCTCCTGGAAACCTTCTCACAGGCTTTGGATTTTACGAGCCATATTGGCTGGTTGACATTGGAAATATCTGCATTGTAATCCACCTGGTTGGTGCTTATCAGATATTTGCCCAACCATTGTTTGCATTCGTTGAGGAATGGTGCTCTGATACATGGACCAAAAGCAGTTTCATACACAAGAAGTATACAGTTAAATTTCCAGGCTATGGGTCATTGAATCTCACCCTTTTTTGTCTGGTGTGGAGGACCTGTTATGTGATTTTTACGACTACGGTGTCCATGATTCTTCCTTTCTTCAATGACGTTGTGGGCATTTTGGGAGCGTTGGCCTTCTTTCCACTAACTGTTTATTTCCCAGTAGAAATGTACATAGTTCAATACAAGGTTCCACGATGGAGCTGTAAGTGGGTGGTTTTACGGTTGCTGAGCATAACATGCTTTGTTATCTCCTTGGTTGCCTTGGTTGGCTCAGTTGCAGGGGTCATAAAAGCCCTGCGTGGCTACCAGCCTTTCAAAACCAGTATTAGATGGAAGGTTTTAAAAACTATCATAGTTCTGCAGTGTAGCATAAAAAATAGATGGGGAAGAAGAATAGCGACTATGAATATCAATTAA___AATTTCAGTGTTCCATATGGATAGGAATAAACACTATCCTTGGAATAGCAACTGCCAATATGTAGGTTGTTTGGTTATTGAATTTAGTAATTAATGTGA

Fln Alignment:

Contig2046___DDDGRGKRKGNVWTASCHVITAVIGSGVLSLAWSMAQLGWVVGPVVIIGFSVVTYYTSLLLADCYRSPDPVTGQRNYTYKDAVKANLGGAQVILCGFIQYINLLGTTIGYTITASISLVAIERSNCFHEKGRDAPCHISNNLYMAIFGLAQIIFSQIPNLHKVWWLSIVAAVMSVSYSVIGLGLAIGKATEKNHSYGSLEGVGIGELFQDVDQTWHVFQALGNVAFAYSFSMILIEIQDTIKSPPAENKTMKKATTIGVIVTTLFYVSVGSVGYAAFGNHAPGNLLTGFGFYEPYWLVDIGNICIVIHLVGAYQIFAQPLFAFVEEWCSDTWTKSSFIHKKYTVKFPGYGSLNLTLFCLVWRTCYVIFTTTVSMILPFFNDVVGILGALAFFPLTVYFPVEMYIVQYKVPRWSCKWVVLRLLSITCFVISLVALVGSVAGVIKALRGYQPFKTS
D5A7Z1______________DEDGHPQRTGDVWTASSHVITAVIGSGVLSLAWSMSQLGWIAGPLVLLAFSFVTYYTSMLLADTYRSPDPVTGRRNYTYTDAVTAILGGKRVFLCGIVQYLNLLGTTIGYTITASISMVAIGRSDCFHEKGRESPCHISNNLYMAIFGAAQVLLSQIPNFSKIWWLSTLAAVMSLTYSFIGLGLGIGMATEKGHSHGSLGGVGIAGVQKSVDKIWNIFQALGNIAFAYSFSMILVEIQDTVKSPPAENKTMKKASFIGVVVTTMFYISVGCAGYAAFGDHAPGNLLTGFGFYNPFWLVDIANICIVIHLVGAYQVFCQPLYAFVEEWSANTWTKSCFIQNEYKVPIPGLGEFKLNLFRLVWRTCFVVFTTVVSMVLPFFNAIMGVLGAIAFFPLTVYFPIQMHIAQTKLRRWSFKWVALQLMCVLCFFVTMAALVGSIAGVVEVLQHYTPFKTT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
23		25		75	0.996473
24	25	75			0.996473
26	25			75	0.996473
28	75			25	0.996473
29	25	75			0.996473
31			25	75	0.996473
32		25		75	0.996473
35		75	25		0.996473
36			25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain