SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene2031

Length: 1817 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene2031

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	syntaxin of plants 31 [Arabidopsis thaliana]	-	-	0.0	50%
FL-Next	sp=Syntaxin-31; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	Syntaxin 32	-	-	1.284e-08	-

Source	Gene names
Sma3	At3g24350; At5g05760; CHLREDRAFT_195412; GSVIVT00016796001; GSVIVT00029255001; GSVIVT00032536001; K7M2.13; MICPUCDRAFT_44740; MICPUN_63325; MJJ3.17; OSTLU_6042; Os01g0179200; OsI_00640; OsJ_00609; Ot11g03120; P0406H10.17; P0509B06.19; PHYPADRAFT_208514; P

Source	GOs	Term	Type	Identity
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	WIYLD domain	IPR018848	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05760.1	SYP31, ATSED5, ATSYP31, SED5 syntaxin of plants 31 chr5:1729111-1730903 REVERSE LENGTH=336	51%
RefSeq	Arabidopsis thaliana	NP_196195.1	syntaxin-31 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002316227.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FFK1

Fln msg:

Fln protein: MAFSGSLASYRDRTSEFQSLTERLRKIQTPGSSSDSNGLGNSAKISQSAALVPSDFNKRASRIGLGIHEASQKIARLAKMAKKTSMFDDPAKEIEELTAVIKQDITALNAAFSDLQALQNSQVGDSNFSKDSAIHFTTIVDDLNNRLKGITKELKDVLVTRSENLKAHENRKQLFSSNASRGNPFAQQRGTGVSSGAVTDTKPPPWTNGSNFSASLPTSRVPLIDHSNVSQLRRRVGGDGATSIQMEGYMQQQMIQRQDSHMQSRATALQNVESTISELGNIFTQLATMVAHQGELAIRIDDNMDDTLANVEGAQGALLKHLSHISSNRWLIIKILFVLIIFMLIFIVFVA*

Protein Length: 353

Fln nts: ATTTTCAATCATAATGGGCTCCGAAGACTGTCAATAATGAATTCAGTCCCCCAACTTTTCTGGAAAAGGAAATGTTAGCCAATTTATAGCCATTTTGGTGCAGAATTTTGGCAATGGACGTAAATTTCCTGTTTGGTTATTCTCCTTTAATTCGATCAATTCACGCAGTTTGCACGCGTTCGTCTTACGCTTAATCTTGTCAAGGGTTCCAAATTGAACAGCGACTATTTTTTTCCGCTTTAAATTATCCTTATTTTCATAATCAGCAGATGCTGATAAGGGAATTGCGCGAATTTTCAAGCCATACTCCATTCGAAGGTCCCATGCAGAGGTTATATGGAAGATAATTTGCCTAGCTAACTATAGTTCCGTTGGGGATCAGGACTGTAACAGGGGTTTCATTTACATAGTAC_-_ATGGCTTTTTCCGGATCTTTGGCATCCTATAGGGATCGGACATCCGAGTTCCAGTCATTGACAGAGAGATTGAGGAAGATTCAAACCCCTGGGAGTTCATCGGATAGCAATGGATTGGGAAATAGTGCGAAGATTTCTCAATCTGCAGCCCTTGTTCCATCGGATTTCAATAAGAGGGCTTCTAGAATCGGCCTTGGCATCCACGAGGCTTCTCAGAAGATTGCAAGACTTGCCAAGATGGCAAAGAAGACATCCATGTTTGATGACCCTGCCAAGGAAATAGAAGAACTTACTGCAGTTATTAAGCAAGATATCACAGCATTAAATGCTGCATTTTCAGACTTGCAAGCTCTTCAAAACTCTCAAGTAGGTGACAGTAACTTTTCCAAGGATAGTGCTATTCATTTCACAACAATTGTAGATGATTTGAACAACAGGCTCAAGGGCATTACAAAGGAATTGAAAGATGTTCTGGTTACAAGGTCTGAGAATCTTAAGGCTCACGAAAATAGGAAGCAGTTGTTCTCCTCAAATGCATCTAGAGGCAATCCTTTTGCTCAACAAAGAGGCACTGGTGTAAGTAGTGGTGCAGTAACAGATACAAAGCCACCTCCTTGGACAAATGGATCAAATTTTTCTGCCTCACTGCCTACATCAAGGGTTCCTTTGATCGATCATTCAAATGTTAGCCAACTGAGGCGTCGGGTTGGTGGAGATGGTGCTACATCTATCCAGATGGAAGGATACATGCAACAGCAGATGATTCAACGACAAGACAGTCATATGCAGTCTAGGGCAACTGCTCTCCAGAATGTTGAGTCAACAATCTCAGAACTTGGCAATATCTTTACACAGTTAGCCACAATGGTTGCTCACCAAGGGGAACTGGCTATCAGGATAGATGATAACATGGATGATACATTGGCTAATGTGGAAGGAGCACAGGGTGCTCTTTTAAAACACTTGAGTCATATTTCTTCAAATAGGTGGCTTATTATCAAGATTCTTTTTGTTCTTATAATTTTCATGCTAATATTTATTGTTTTTGTGGCGTAA___GGTCAAGAAATGAATAGAATTGTTTTTTTAAAAGTTTTGAAATTGATTGGGTTTATCACCTTCTGTAATCTTCCAAGGGTAGAAATAGTTTTTGGTATAGAGGGATGGCTTTAGGCTAGTCTTTATTCTTCCAAATTATAATGTATTAACGTTGATTGCGGCCATTCTCTTGTATGAAGAACAATACTGAATTATTGGTCTTTGTTTGGCGTGGCCTAGTTAAACATTGGAGCCACATCTTGATTAACAATAACTTGTTCACCTAAAGGTTGCCCATGACCATGTGTTCTGACATTGGCATGTATTTCATCATTCATGATGTGTGTCCTCAATTGAACACCAAGAATC

Fln Alignment:

Contig2031___ASYRDRTSEFQSLTERLRKIQTPXXXXXXXXXXXXAKISQSAALVPSDFNKRASRIGLGIHEASQKIARLAKMAKKTSMFDDPAKEIEELTAVIKQDITALNAAFSDLQALQNSQVGDSNFSKDSAIHFTTIVDDLNNRLKGITKELKDVLVTRSENLKAHENRKQLFSSNASRGNPFAQQRGTGVSSGAVTDTKPPPWTNGSNFSASLPTSRVPLIDHSNV--SQLRRRVGGDGATSIQMEGYMQQQMIQRQDSHMQSRATALQNVESTISELGNIFTQLATMVAHQGELAIRIDDNMDDTLANVEGAQGALLKHLSHISSNRW
Q9FFK1______________STFRDRTVELHSLSQTLKKIGAIPSVHQDEDDPASSKRSSPG----SEFNKKASRIGLGIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSP--------PQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRW

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
70	66		33		0.997452
137		50		50	1.0
897			88	11	0.923564
899	11	88			0.923564
900		11		88	0.923564
901	11		88		0.923564
1039	10		90		0.90298
1041	90			10	0.90298
1043		90		10	0.90298
1044	90			10	0.90298
1045	90			10	0.90298
1046	90		10		0.90298
1047			10	90	0.90298
1049	10			90	0.90298
1052		81	18		0.999994
1416		12	87		0.992554
1517	87		12		0.992554
1762			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain