SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1985

Length: 3554 nt

UniGene Fasta

>sp_v3.0_unigene1985
ACCTTTGCTTCCATGATATATGTTGCTGTGCCCGAACATTGTGTGTATCATTGTGCGAACATTGTGTGTATATCATTTTGCAGGCGAGCATTGTGTGGAATGGGTCAGTTTCAGCTTTCGGCTTTTTCTGAGAGGGCCCAGCAGTGGACCAGTGCTTAAATTTGCAAAGACAGCCGTTGGATATACATGTGGGTTTGCCTTATATTCAACCGAAATTTAGCGTATTTATTGCCTTCATTTCGTTTCCTAGGCCACAAAGTCATATCTTTATGGAAAAAACGAGTGTGTTATTTCATGGAAACAGAGCGTGTATCCCCGTCTTTCTCACAGTATATTTAATTATCCTGTTCTAGATAGAGTAGAGCAATAACAATAATATTTGCAGGAAGGTGGGGTTACAAACGGCTAGCAAACTGTGAATTCAGAGACGAAAATGCTCATGAATTTCTAACCGTTGCTAAATGTAGCAACATGTGATGTTTTTAGCGTCAGAGGCCAGATCTGCCTTCAAGAAAAGCTGTCAGCTTCAGCCTTGAGGCCTGTATGTAGTTCATCAACACTCTAGTCGAAGTTGACAACATTCTGATGCTGAGCGTAGTCTGTATGAAGCTGTAACGATAGAACACATAAAGCAATTGCCTTGCTTTCTTTCTTTATCAAGTTGAGGAATGGACTGTTTGGTTTGTGTGTTGCCTTTGAATGGTACTAGTTTCGTTTTCATTTGCCCTACTCTGTACAAGGTTCTGGGCGTTTGTTAGGCGTGGTTAGGATTCTGCTTTCTCCCATCAATGCACGCGTTTATTGTGTTTCTTGAGCCTTTTAAGGTACCGGCTGGACTTTATACCCGTGTTTTGTATGGCAAGAGGTCGCGAGTGTTTAATGAAGAAAAGATACGCTGAGAATCCAAGGTTCTAACTGTTTTTAACAGAGCTCTTGTGGGTTTGTTCTTCTCAGAGTTTTTACTTCTCCTGAAACTGTCAATCGTGCAAATTACAGAATGACATCCAGATTCATCAATTCGTTTCTTCTTTGGGTCGTTATTTTGCATCTCAGTTTTCGTAATGTTCTCGGCATAAACAGGGATGGGGTTGCTCTCATTGCATTCAAAACTGCCATATTGGAAGACCCACAAGGCTTCCTGGACAACTGGAATGCCTCTGATGAGACCCCCTGTGCTTGGAATGGGATCCTTTGTACGCAGATTGGGCATGATAAAGAGCTCCGTGTTGTGGGGATTATTATTCCAAAGAGGCAGCTTGTGGGTATTATCCCATCTGTGCTAGGAGCGCTTGTTTACCTTCGCCGTGTCAATATGAGACACAACAGGCTCAATGGAAGCCTGCCTCGCGAGCTCTTCAATGCAGGAGGTCTTCAGAGTTTAATTTTTAATGGGAATTCCCTTAAAGGTCCATTGCCCGAAGAAATTGGAAAGCTCAGGTACCTTCAGAACCTTGATTTATCTTTTAATTCATTTGTGGGCATCATTCCCCCGGCAATCAACAATTGCACTAGATTGAGGAGGCTGGTTTTGAACAATAACAATTTTTCGGGGCTGCTTCCTCGAGGAATGGGAAACAGTCTCCCCATTCTCCAACAGTTGGACTTATCATACAATCTCCTCAATGGATCCATTCCTCCTGATCTTGGTAATCTAACCCATCTTCAAAGCACTCTGCAGCTCTCCAACAACTTCTTTACAGGCTCAATCCCTGCAAGTTTTGGCAATCTGCCTGAAAAGGTAAGCATAGATCTTACTTACAACAAGCTCACTGGAGCTATTCCTCAGAATGGAGCCTTAGCTAATCAGGGCCCAACAGCGTTTCTGGGAAACCCTGGTCTCTGTGGTTCACCCCTGCAAAAATCATGCCCAACTCCTCCGACTTCTTCCAGCATTCCCAATCTGCCCAATTTAGGTCCTTCACATACAGGCCCATCGGTGGAGATGGTTACGAAAAACAAAGGTCTAAGTAGAGGAGCAATTGTAGCCATTGCCATTGGAGATGTGGCAGGTATTATTTTGATAAGTTTGATCTTTCTATATTGTTACTGGAGAGCCCTCGGATGTCAAGACAAAGATTCTGCAAACGAGGAGTCAACGAGTGGAGGGAGAGGAAGAGGTTGGCTTTGCCTTAGAAGGAAGGATGACTCTGAAGTCTATTCCGAGAATATGGAACAGGCAGATCTTGTAGCTTTGGATGGGCAGGTAAGTTATGATCTTGACGAGCTTCTGAGGGCCTCTGCTTTTGTCCTGGGAAAGAGTGGTGTTGGCATCGTATACAAAGTGGTGTTAGAAGACGGGCTCACATTGGCTGTTAGGAGGCTTGGGGAAGGAGGTTCTCAGAGATTCAAAGAGTTTCAAGCAGAAGTGGAAGCTATAGGTCGAATTCGGCACTGCAACATAGTTACTCTTAGAGCCTATTACTGGTCTGTAGATGAGAAACTGCTGATCTATGACTACATCCCTAATGGCAGTTTAGCTGCTGCATTGCATGGGAAAGCAGCAACTTCTTCACCTTTATTGTGGGCTGCTCGCCTGAAAATTGCAAAAAGTGTTGCTAAAGGTTTGGCCCATATACATGAGTGCAGTCCGAAGAAATACATTCATGGAGATCTAAAGCCCACCAATATTCTCTTGGGCTTAAACATGGAACCTTATATATCAGATTTTGGTCTGGGTCGCCTTGCAAGCATTGCAGGAGCTCTCTCAACTAAACAGAATGTGATGATTGGGACAACACATCCAGAGAGCAAGCTTGGATTAGAAGCACAATCTGCCCCTGTTCATTCCATGGGCTTTACATCTCAAGGAATACTAATGAGTCCGGGCTCTTCCTACCAGGCCCCAGAAGTTTCGAAAACTTTAAAGCCCACACAGAAGTGGGATGTTTATTCCTTTGGAGTTATTCTTTTGGAACTGCTTTCTGGCAAATCTCCTCTAATTCAGGTTGGTTCTGAAGAGATGGACTTGGTAAGGTGGATACAAGTTTCTATAGAAGAGAAGAGGCCTCTTCCGGATGTTCTTGATCCTGTCCTAGTGGAAGAATTGCATAAAGAAGAAGAAATCCTTGGTGTCTTGAAGATTGCACTGGGTTGTGTCCAAGGATTTCCTGAGAGGCGGCCTTCAATGAAGCATGTTGCAGAGTTGCTGGAGAAAGTCAGTGGCCCCCTTTAATATATGGCTGATTCAATCTTTTTCACATCTATTTCAATTTCTTCTGTTGACCAGAATGCAAGTCAGAAAGTACACATTCCAAGACGGCTAGAATTTGACCTCTAAATGGATTTAGTCCACTGTTTGTATGTATACTAACCAGTAAAATTCTCAAGTGGTGGCAAATTTGCCCAGGGAGGGGCCAAGATTCTTTTTCTCTGTGATCACTCCACACACAGACTGGCAGGCCTCCGTGGTGATTTGTGAGTTGTATTTGTGAGTCTATTTCTTGTATGTAGCATGGCGAGTTCAATATTTTGGAATAATTGATCGCGTAGAGTATCTTGGACCCAACTTGAAACTCAAAGAAAACTTTATATATTCAATATGTTTTGGGGTTTCA

Ace file of the UniGene sp_v3.0_unigene1985

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SJW4_RICCO	-	-	0.0	56%
FL-Next	sp=Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	6.214e-09	-

Source	Gene names
Sma3	AT1G25320; AT1G67510; AT2G01210; At1g25320; At1g66830; At1g67510; At2g01210; B1075D06.7; F12B7.6; F4F7.29; F4N21_23; GSVIVT00030403001; GSVIVT00035047001; LOC_Os11g19480; LOC_Os12g13300; LRR-RLK; Os01g0514700; Os11g0300600; OsI_02173; OsI_35883; OsJ_01996

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Asparaginase/glutaminase	IPR006034	-	-
Sma3	Tumour necrosis factor	IPR006052	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF1242	IPR009653	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01210.1	Leucine-rich repeat protein kinase family protein chr2:119509-121734 REVERSE LENGTH=716	53%
RefSeq	Arabidopsis thaliana	NP_178230.1	leucine-rich repeat transmembrane protein kinase-like protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002315920.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C9N5

Fln msg: your sequence is longer than subject: 725 - 685

Fln protein: MTSRFINSFLLWVVILHLSFRNVLGINRDGVALIAFKTAILEDPQGFLDNWNASDETPCAWNGILCTQIGHDKELRVVGIIIPKRQLVGIIPSVLGALVYLRRVNMRHNRLNGSLPRELFNAGGLQSLIFNGNSLKGPLPEEIGKLRYLQNLDLSFNSFVGIIPPAINNCTRLRRLVLNNNNFSGLLPRGMGNSLPILQQLDLSYNLLNGSIPPDLGNLTHLQSTLQLSNNFFTGSIPASFGNLPEKVSIDLTYNKLTGAIPQNGALANQGPTAFLGNPGLCGSPLQKSCPTPPTSSSIPNLPNLGPSHTGPSVEMVTKNKGLSRGAIVAIAIGDVAGIILISLIFLYCYWRALGCQDKDSANEESTSGGRGRGWLCLRRKDDSEVYSENMEQADLVALDGQVSYDLDELLRASAFVLGKSGVGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQAEVEAIGRIRHCNIVTLRAYYWSVDEKLLIYDYIPNGSLAAALHGKAATSSPLLWAARLKIAKSVAKGLAHIHECSPKKYIHGDLKPTNILLGLNMEPYISDFGLGRLASIAGALSTKQNVMIGTTHPESKLGLEAQSAPVHSMGFTSQGILMSPGSSYQAPEVSKTLKPTQKWDVYSFGVILLELLSGKSPLIQVGSEEMDLVRWIQVSIEEKRPLPDVLDPVLVEELHKEEEILGVLKIALGCVQGFPERRPSMKHVAELLEKVSGPL*

Protein Length: 726

Fln nts: ACCTTTGCTTCCATGATATATGTTGCTGTGCCCGAACATTGTGTGTATCATTGTGCGAACATTGTGTGTATATCATTTTGCAGGCGAGCATTGTGTGGAATGGGTCAGTTTCAGCTTTCGGCTTTTTCTGAGAGGGCCCAGCAGTGGACCAGTGCTTAAATTTGCAAAGACAGCCGTTGGATATACATGTGGGTTTGCCTTATATTCAACCGAAATTTAGCGTATTTATTGCCTTCATTTCGTTTCCTAGGCCACAAAGTCATATCTTTATGGAAAAAACGAGTGTGTTATTTCATGGAAACAGAGCGTGTATCCCCGTCTTTCTCACAGTATATTTAATTATCCTGTTCTAGATAGAGTAGAGCAATAACAATAATATTTGCAGGAAGGTGGGGTTACAAACGGCTAGCAAACTGTGAATTCAGAGACGAAAATGCTCATGAATTTCTAACCGTTGCTAAATGTAGCAACATGTGATGTTTTTAGCGTCAGAGGCCAGATCTGCCTTCAAGAAAAGCTGTCAGCTTCAGCCTTGAGGCCTGTATGTAGTTCATCAACACTCTAGTCGAAGTTGACAACATTCTGATGCTGAGCGTAGTCTGTATGAAGCTGTAACGATAGAACACATAAAGCAATTGCCTTGCTTTCTTTCTTTATCAAGTTGAGGAATGGACTGTTTGGTTTGTGTGTTGCCTTTGAATGGTACTAGTTTCGTTTTCATTTGCCCTACTCTGTACAAGGTTCTGGGCGTTTGTTAGGCGTGGTTAGGATTCTGCTTTCTCCCATCAATGCACGCGTTTATTGTGTTTCTTGAGCCTTTTAAGGTACCGGCTGGACTTTATACCCGTGTTTTGTATGGCAAGAGGTCGCGAGTGTTTAATGAAGAAAAGATACGCTGAGAATCCAAGGTTCTAACTGTTTTTAACAGAGCTCTTGTGGGTTTGTTCTTCTCAGAGTTTTTACTTCTCCTGAAACTGTCAATCGTGCAAATTACAGA_-_ATGACATCCAGATTCATCAATTCGTTTCTTCTTTGGGTCGTTATTTTGCATCTCAGTTTTCGTAATGTTCTCGGCATAAACAGGGATGGGGTTGCTCTCATTGCATTCAAAACTGCCATATTGGAAGACCCACAAGGCTTCCTGGACAACTGGAATGCCTCTGATGAGACCCCCTGTGCTTGGAATGGGATCCTTTGTACGCAGATTGGGCATGATAAAGAGCTCCGTGTTGTGGGGATTATTATTCCAAAGAGGCAGCTTGTGGGTATTATCCCATCTGTGCTAGGAGCGCTTGTTTACCTTCGCCGTGTCAATATGAGACACAACAGGCTCAATGGAAGCCTGCCTCGCGAGCTCTTCAATGCAGGAGGTCTTCAGAGTTTAATTTTTAATGGGAATTCCCTTAAAGGTCCATTGCCCGAAGAAATTGGAAAGCTCAGGTACCTTCAGAACCTTGATTTATCTTTTAATTCATTTGTGGGCATCATTCCCCCGGCAATCAACAATTGCACTAGATTGAGGAGGCTGGTTTTGAACAATAACAATTTTTCGGGGCTGCTTCCTCGAGGAATGGGAAACAGTCTCCCCATTCTCCAACAGTTGGACTTATCATACAATCTCCTCAATGGATCCATTCCTCCTGATCTTGGTAATCTAACCCATCTTCAAAGCACTCTGCAGCTCTCCAACAACTTCTTTACAGGCTCAATCCCTGCAAGTTTTGGCAATCTGCCTGAAAAGGTAAGCATAGATCTTACTTACAACAAGCTCACTGGAGCTATTCCTCAGAATGGAGCCTTAGCTAATCAGGGCCCAACAGCGTTTCTGGGAAACCCTGGTCTCTGTGGTTCACCCCTGCAAAAATCATGCCCAACTCCTCCGACTTCTTCCAGCATTCCCAATCTGCCCAATTTAGGTCCTTCACATACAGGCCCATCGGTGGAGATGGTTACGAAAAACAAAGGTCTAAGTAGAGGAGCAATTGTAGCCATTGCCATTGGAGATGTGGCAGGTATTATTTTGATAAGTTTGATCTTTCTATATTGTTACTGGAGAGCCCTCGGATGTCAAGACAAAGATTCTGCAAACGAGGAGTCAACGAGTGGAGGGAGAGGAAGAGGTTGGCTTTGCCTTAGAAGGAAGGATGACTCTGAAGTCTATTCCGAGAATATGGAACAGGCAGATCTTGTAGCTTTGGATGGGCAGGTAAGTTATGATCTTGACGAGCTTCTGAGGGCCTCTGCTTTTGTCCTGGGAAAGAGTGGTGTTGGCATCGTATACAAAGTGGTGTTAGAAGACGGGCTCACATTGGCTGTTAGGAGGCTTGGGGAAGGAGGTTCTCAGAGATTCAAAGAGTTTCAAGCAGAAGTGGAAGCTATAGGTCGAATTCGGCACTGCAACATAGTTACTCTTAGAGCCTATTACTGGTCTGTAGATGAGAAACTGCTGATCTATGACTACATCCCTAATGGCAGTTTAGCTGCTGCATTGCATGGGAAAGCAGCAACTTCTTCACCTTTATTGTGGGCTGCTCGCCTGAAAATTGCAAAAAGTGTTGCTAAAGGTTTGGCCCATATACATGAGTGCAGTCCGAAGAAATACATTCATGGAGATCTAAAGCCCACCAATATTCTCTTGGGCTTAAACATGGAACCTTATATATCAGATTTTGGTCTGGGTCGCCTTGCAAGCATTGCAGGAGCTCTCTCAACTAAACAGAATGTGATGATTGGGACAACACATCCAGAGAGCAAGCTTGGATTAGAAGCACAATCTGCCCCTGTTCATTCCATGGGCTTTACATCTCAAGGAATACTAATGAGTCCGGGCTCTTCCTACCAGGCCCCAGAAGTTTCGAAAACTTTAAAGCCCACACAGAAGTGGGATGTTTATTCCTTTGGAGTTATTCTTTTGGAACTGCTTTCTGGCAAATCTCCTCTAATTCAGGTTGGTTCTGAAGAGATGGACTTGGTAAGGTGGATACAAGTTTCTATAGAAGAGAAGAGGCCTCTTCCGGATGTTCTTGATCCTGTCCTAGTGGAAGAATTGCATAAAGAAGAAGAAATCCTTGGTGTCTTGAAGATTGCACTGGGTTGTGTCCAAGGATTTCCTGAGAGGCGGCCTTCAATGAAGCATGTTGCAGAGTTGCTGGAGAAAGTCAGTGGCCCCCTTTAA___TATATGGCTGATTCAATCTTTTTCACATCTATTTCAATTTCTTCTGTTGACCAGAATGCAAGTCAGAAAGTACACATTCCAAGACGGCTAGAATTTGACCTCTAAATGGATTTAGTCCACTGTTTGTATGTATACTAACCAGTAAAATTCTCAAGTGGTGGCAAATTTGCCCAGGGAGGGGCCAAGATTCTTTTTCTCTGTGATCACTCCACACACAGACTGGCAGGCCTCCGTGGTGATTTGTGAGTTGTATTTGTGAGTCTATTTCTTGTATGTAGCATGGCGAGTTCAATATTTTGGAATAATTGATCGCGTAGAGTATCTTGGACCCAACTTGAAACTCAAAGAAAACTTTATATATTCAATATGTTTTGGGGTTTCA

Fln Alignment:

Contig1985___FLLWVVILHLSFRNVLGINRDGVALIAFKTAILEDPQGFLDNWNASDETPCAWNGILCTQIGHDKELRVVGIIIPKRQLVGIIPSVLGALVYLRRVNMRHNRLNGSLPRELFNAGGLQSLIFNGNSLKGPLPEEIGKLRYLQNLDLSFNSFVGIIPPAIXXXXXXXXXXXXXXXFSGLLPRGMGNSLPILQQLDLSYNLLNGSIPPDLGNLTHLQSTLQLSNNFFTGSIPASFGNLPEKVSIDLTYNKLTGAIPQNGALANQGPTAFLGNPGLCGSPLQKSCXXXXXXXXXXXXXXXGPSHTGPSVEMVTKNKGLSRXXXXXXXXXXXXXXXXXSLIFLYCYWRALGCQDKDS------ANEESTSXXXXXXXXXXXXKDDSEVYSENMEQADLVALDGQVSYDLDELLRASAFVLGKSGVGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQAEVEAIGRIRHCNIVTLRAYYWSVDEKLLIYDYIPNGSLAAALHGKAATSS--PLLWAARLKIAKSVAKGLAHIHECSPKKYIHGDLKPTNILLGLNMEPYISDFGLGRLASIAGALSTKQNVMIGTTHPESKLGLEAQSAPVHSMGFTSQGILMSPGSSYQAPE-VSKTLKPTQKWDVYSFGVILLELLSGKSPLIQVGSEEMDLVRWIQVSIEEKRPLPDVLDPVLVEELHKEEEILGVLKIALGCVQGFPERRPSMKHVAELLEKV
Q9C9N5______________FLILCFILTHFFAIATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNY-----DMRVVSIRLPNKRLSGSLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSLKSLMTLDLSENSFNGSISLSLIPCKKLKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSFNRLTGTIPEDVGSLENLKGTLDLSHNFFSGMIPTSLGNLPELLYVDLSYNNLSGPIPKFNVLLNAGPNAFQGNPFLCGLPIKISCSTRNTQVVPSQLYTRRANHHSRLCIILTATGGT------------VAGIIFLASLFIYYLRKASARANKDQNNRTCHINEKLKKTTKPEFLCFKTGNSESETLDENKNQQVFMPMDPEIEFDLDQLLKASAFLLGKSRIGLVYKVVLENGLMLAVRRLEDKGWLRLKEFLADVEAMAKIKHPNVLNLKACCWSPEEKLLIYDYIPNGDLGSAIQGRPGSVSCKQLTWTVRLKILRGIAKGLTYIHEFSPKRYVHGHINTSNILLGPNLEPKVSGFGLGRIVDTSSDIRSDQISPMETSSP-----------------------ILSRESYYQAPEAASKMTKPSQKWDVYSFGLVILEMVTGKSPV----SSEMDLVMWVESASERNKPAWYVLDPVLARDRDLEDSMVQVIKIGLACVQKNPDKRPHMRSVLESFEKL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
3088	11		88		0.923564
3089		88		11	0.923564
3090	88			11	0.923564
3091		88	11		0.923564
3092			11	88	0.923564
3166		10	90		0.90298
3167	20		80		0.999996
3169	11	77		11	0.968132
3170		88		11	0.923564
3171	11	77		11	0.968132
3243	12		87		0.992554
3244	87			12	0.992554
3245	87		12		0.992554
3246	87			12	0.992554
3300		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain