SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1902

Length: 2178 nt

UniGene Fasta

>sp_v3.0_unigene1902
AGATGCCGTTTTTATCAAAGTGTCTTTTGCTCCTTCCGAGACATGGAAGGCCTGCGCACAATGGGTCCCGTTCCCGTATTGTCGTTCTTTATTATTCGCCTTTCTAAAGCTCATGAAATGGTACAGACCAGCAGATTCCTACATCTAAACTGGTAAAGAGTCCACCTGCATTTTTTTAGTGGTTAGTTTCGAGACGCGGTTCTTTTCATGTCTCGTTTAATCGCAGTTGCTGTTGGGTACCGTGTTTCTAATAATGTTAACCCTTCTTTTATTACTGGTATGCATTACATAAAAATACCGGTGTGCATTACATTAAAATACTGAAAACTCAACTGAATACACTCGATTCGCGAGGATATCAATCAGTAGGACACATATCGGACCTGAAAGAATCAAATATTTGCTTGTCAAAGTCCAAAACCCTATTGTGTATTCTTTACCTTTTCGCTCTCTAATTGGGTTTCTCAGGTTTTGCAATTATGCTTTTACTTTCTAATTGGGTCCTCTGAATTTGTAAGGATGTCAACCAATAGAACCAAGAGCGGATGTAAGATTTCCCAATAATTGTTTTGATGATCTCAGAGCTCCTGCTCTGCCTTATTTTATTACTTCAAAACTGGGATTTTAGGATTTGCAAGGATATCAAGCAGGAGAACCCAGATTAAAAATGAAATGACCACATTTGGACTCCCAACTTCTGGGAGTATAACGAATGGGTTTTGCAGTTTTGACGGGCTAAAAACTATTGATTCCTCGCGAGTGTTAATAATTTTCAAGAAAAGTTGCATGTGAAATAACTTGGATGACTTAGATGGAGTAGATGCCTCTCAAGTTCCCAAACGTAGCCTCATTGCAAGGCAGAAACATATGCAAGATAATTTATTGTCAAGATCTCGCAGTTATTGGGCATGCCTAATTTTTTTCTAATGCTGTAAGTTTGAGGCCGTTTTGATGGAAACGGGAGCAGAGAGATCCCCCGGAATAATACTAGTGAGAGTAGAATGGGGGGACACTCTATGGGATCTCTCCAGGAGATTGGGTTTGGACCACTGGCATGGAATTCAACTTGCAAACGGGCTGAAGGATGACCTTATATTTGCCGGGGAAGTGCTCAAAGTGCCTCTCCCCAGCACTGTTTCGATGACAGCGTGCAGGTGGAGAAGGCGACACTATTGGCCTTGGGTGGTGCAGTCTGGAGACACTGCATGGGACATCTCAGAGAGGTTCAGGATCAGTTTGGAGGATCTTGAGAGGGCCAATTCTTGCTTGCTTGATCTACTTTATCCTGGGGATATCATGCAGGTGCCCGAAAAGGATTCAACGCTGAAAGAAGTAATGGCTAGGTCAAAAGTTTCAGGGGATTCGACGATCAAGCCCAATTTTTTCGATGTATTTCCGCCTCCGAAAGATATTGACGAGTATAGGAAAAAACATAGGATCCTGCTGAATGCTTTAAGGGATGTGGAATCAAGCTTTATTATGCCTGCTCCTACTGGAGATGGTGGCCTAAGCATTGGCCCCTTACAAATAAGCCATGACTATCATACAGATGCCTCTTGGTTGACAGCTCATGGGGTGAACTATGAATCCTGTAATGATGTGGATTACTCAGAAAGGACAGTTATCAAATATTGGCTTCGCTATTGTCCCTGGGCACTTGAATTTAGCGATTTCGAAACATTAGCAAGGACTCATAATGGAGGTCCCCAATTTTGGCAATTTCTATCAACAACCCGCTACTGGAAAAGAGTACGAAGGTCAATGAAGAGATTTGGACACCGGCAAGGATTTCCTGCATTTACAGCAGGCATTGGAAATCAGCAGACCATCCACCTTTTTAGTGTTAACATTCCTTTTCCTATTCCATTGCTTGATAGCAAAGTCACAACTTCAGTTATAGTGACTTGAAGATCAAATTGCTTCATTTGTTGCTGGAGTCTCATGTCTGATATATGAAGCATAAAGCACCACATTGGTCTCCATTTTTTTTCTCTCTTTTCAGTTGATTTAGATTGATGAAATGACATCTGCATTTTTAAACTGTCTGGCTTGTGACCTTGTGACCTAGGCTTTTTTAAAAGATGCTGTGGAAATTAGATATCTAATAACTAATCAGTAAATATTCACTTATATATTGCATATTTGTAAAATTTTCATCCCATAAATCAAGTGTTTTGT

Ace file of the UniGene sp_v3.0_unigene1902

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9STB5_PHYPA	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	0.0	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNJ4

Fln msg:

Fln protein: METGAERSPGIILVRVEWGDTLWDLSRRLGLDHWHGIQLANGLKDDLIFAGEVLKVPLPSTVSMTACRWRRRHYWPWVVQSGDTAWDISERFRISLEDLERANSCLLDLLYPGDIMQVPEKDSTLKEVMARSKVSGDSTIKPNFFDVFPPPKDIDEYRKKHRILLNALRDVESSFIMPAPTGDGGLSIGPLQISHDYHTDASWLTAHGVNYESCNDVDYSERTVIKYWLRYCPWALEFSDFETLARTHNGGPQFWQFLSTTRYWKRVRRSMKRFGHRQGFPAFTAGIGNQQTIHLFSVNIPFPIPLLDSKVTTSVIVT*

Protein Length: 320

Fln nts: AGATGCCGTTTTTATCAAAGTGTCTTTTGCTCCTTCCGAGACATGGAAGGCCTGCGCACAATGGGTCCCGTTCCCGTATTGTCGTTCTTTATTATTCGCCTTTCTAAAGCTCATGAAATGGTACAGACCAGCAGATTCCTACATCTAAACTGGTAAAGAGTCCACCTGCATTTTTTTAGTGGTTAGTTTCGAGACGCGGTTCTTTTCATGTCTCGTTTAATCGCAGTTGCTGTTGGGTACCGTGTTTCTAATAATGTTAACCCTTCTTTTATTACTGGTATGCATTACATAAAAATACCGGTGTGCATTACATTAAAATACTGAAAACTCAACTGAATACACTCGATTCGCGAGGATATCAATCAGTAGGACACATATCGGACCTGAAAGAATCAAATATTTGCTTGTCAAAGTCCAAAACCCTATTGTGTATTCTTTACCTTTTCGCTCTCTAATTGGGTTTCTCAGGTTTTGCAATTATGCTTTTACTTTCTAATTGGGTCCTCTGAATTTGTAAGGATGTCAACCAATAGAACCAAGAGCGGATGTAAGATTTCCCAATAATTGTTTTGATGATCTCAGAGCTCCTGCTCTGCCTTATTTTATTACTTCAAAACTGGGATTTTAGGATTTGCAAGGATATCAAGCAGGAGAACCCAGATTAAAAATGAAATGACCACATTTGGACTCCCAACTTCTGGGAGTATAACGAATGGGTTTTGCAGTTTTGACGGGCTAAAAACTATTGATTCCTCGCGAGTGTTAATAATTTTCAAGAAAAGTTGCATGTGAAATAACTTGGATGACTTAGATGGAGTAGATGCCTCTCAAGTTCCCAAACGTAGCCTCATTGCAAGGCAGAAACATATGCAAGATAATTTATTGTCAAGATCTCGCAGTTATTGGGCATGCCTAATTTTTTTCTAATGCTGTAAGTTTGAGGCCGTTTTG_-_ATGGAAACGGGAGCAGAGAGATCCCCCGGAATAATACTAGTGAGAGTAGAATGGGGGGACACTCTATGGGATCTCTCCAGGAGATTGGGTTTGGACCACTGGCATGGAATTCAACTTGCAAACGGGCTGAAGGATGACCTTATATTTGCCGGGGAAGTGCTCAAAGTGCCTCTCCCCAGCACTGTTTCGATGACAGCGTGCAGGTGGAGAAGGCGACACTATTGGCCTTGGGTGGTGCAGTCTGGAGACACTGCATGGGACATCTCAGAGAGGTTCAGGATCAGTTTGGAGGATCTTGAGAGGGCCAATTCTTGCTTGCTTGATCTACTTTATCCTGGGGATATCATGCAGGTGCCCGAAAAGGATTCAACGCTGAAAGAAGTAATGGCTAGGTCAAAAGTTTCAGGGGATTCGACGATCAAGCCCAATTTTTTCGATGTATTTCCGCCTCCGAAAGATATTGACGAGTATAGGAAAAAACATAGGATCCTGCTGAATGCTTTAAGGGATGTGGAATCAAGCTTTATTATGCCTGCTCCTACTGGAGATGGTGGCCTAAGCATTGGCCCCTTACAAATAAGCCATGACTATCATACAGATGCCTCTTGGTTGACAGCTCATGGGGTGAACTATGAATCCTGTAATGATGTGGATTACTCAGAAAGGACAGTTATCAAATATTGGCTTCGCTATTGTCCCTGGGCACTTGAATTTAGCGATTTCGAAACATTAGCAAGGACTCATAATGGAGGTCCCCAATTTTGGCAATTTCTATCAACAACCCGCTACTGGAAAAGAGTACGAAGGTCAATGAAGAGATTTGGACACCGGCAAGGATTTCCTGCATTTACAGCAGGCATTGGAAATCAGCAGACCATCCACCTTTTTAGTGTTAACATTCCTTTTCCTATTCCATTGCTTGATAGCAAAGTCACAACTTCAGTTATAGTGACTTGA___AGATCAAATTGCTTCATTTGTTGCTGGAGTCTCATGTCTGATATATGAAGCATAAAGCACCACATTGGTCTCCATTTTTTTTCTCTCTTTTCAGTTGATTTAGATTGATGAAATGACATCTGCATTTTTAAACTGTCTGGCTTGTGACCTTGTGACCTAGGCTTTTTTAAAAGATGCTGTGGAAATTAGATATCTAATAACTAATCAGTAAATATTCACTTATATATTGCATATTTGTAAAATTTTCATCCCATAAATCAAGTGTTTTGT

Fln Alignment:

Contig1902___METGAERSPGIILVRVEWGDTLWDLSRRLGLDHWHGIQLANGLKDDLIFAGEVLKVPLPSTVSMTACRWRRRHYWPWVVQSGDTAWDISERFRISLEDLERANSCLLDLLYPGDIMQVPEKDSTLKEVMARSKVSGDSTIKPNFFDVFPPPKDIDEYRKKHRILLNALRDVESSFIMPAPTGDGGLSIGPLQISHDYHTDASWLTAHGVNYESCNDVDYSERTVIKYWLRYCPWALEFSDFETLARTHNGGPQFWQFLSTTRYWKRVRRSMKRFGHRQGFPAFTAGIGNQQTIHLFSVNIPFPIPLLDSKVTTSVIV
A9NNJ4______________METGAERPPGIILVRVEWGDTLWDLSRRLGLDHWHGIQVANGLKDDLIFAGEVLKVPLPSTVSMTGCRWRRQHSWPWVVQSGDTAWDISERYRISLEDLERANCCLLDLLYPGDIMQVPEKDSTLKEVMARSKVSGDSRNKPNFFDVFPAPKDMDEYRKKHRILLNALRDVESSFMMPAPTGDGGLSIGPLQISRDYHTDAWWLTTQGVNYESCNDVDYSERTVIKYWLRYCPWALEFSDFETLARIHNGGPQFWQFLSTTHYWQRVRRSMKRFGHQQGFPAYTAGIGKQQPIHLFSANIPFPIPLLDSKFTTSVIL

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
351	12		87		0.992554
380		87		12	0.992554
409		12		87	0.992554
447		87	12		0.992554
453		87	12		0.992554
511	80	20			0.995493
697			33	66	0.997452
789		33		66	0.997452
828		66		33	0.997452
904		33		66	1.0
977		66		33	0.997452
1220	50		50		1.0
1335	16		83		0.994512
1497	12		87		0.992554
1498		12	87		0.992554
1504		12	87		0.992554
1591		42	57		1.0
1593		12		87	0.992554
1596	87	12			0.992554
1597	87		12		0.992554
1601		12		87	0.992554
1602		12	87		0.992554
1604			87	12	0.992554
1606	87		12		0.992554
1607		12		87	0.992554
1610		87	12		0.992554
1614		12	87		0.992554
1615	87			12	0.992554
1616	87	12			0.992554
1661		60		40	1.0
1717		10	90		0.90298
1718			90	10	0.90298
1748	76	7		15	0.999983
1872		75		25	1.0
1912			73	26	1.0
1972	83			16	0.994512
1974	83		16		0.994512
1975		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain