SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1876

Length: 2292 nt

UniGene Fasta

>sp_v3.0_unigene1876
TAATAGTAATAGCCTGAGTCTGGTGGATAATTTGAGGGCCTATTTACAGATTGTGGACGTGTCCTCTATTTTGGGCCTGGACAGAGATATCTCCGATCATGCAATACAGCTTTTCAGGGACTGTTCGTCTGCTATTTACCTCCGGAACCGCAATATTGAGGCCCTCGCTACTGCGGCGCTCGTTCAGGCTATCCGCGAGGCGCAGGAGCCCCGGACGTTGCAGGAGATTTCTGCAGCAGCTAATGTACAGCAGAAGGAAATTGGAAAGTATATTAAAATATTAGGTGATGCTCTAAAGTTAAGTCAGCCCATTAACAGCAATTCGATCTCTGTTCACATGCCACGATTTTGTAGTCTGCTTCAACTGAACAAAGCGACTCAGGATCTGGCAACCCACATTGGAGAAGTAGTAATTGACAAATGCTTCTGTACGCGGAGAAATCCCATTAGCATCTCTGCAGCTGCCATCTATCTGTCTTGTCAACTAGAAGACAAACGGAAAACACAAGCTGAAATTTGCAAAGTGACTGGGCTCACTGAGGTAACTTTGCGTAAAGTCTACAAAGAGTTACTTGAAAATTGGAACGATCTACTGCCAAGCAATTACACACCAGCAGTTCCTCCAGAAAAGGCATTTCCAATGACAGCAGTGGCATTGGGCCGTGCTTCTGCTACAAGAGGTGATGCTAATGGTGGATGTCTTAATGTTACTTCTACCTTGGACTCTTCTGTGACTGTGACTTCGGGTTTTTCCAGTGCCACAGTTCTCCCCGATCTTACCCACGGTGTTGGATCAGGCTCAAGTAATTCAACTTTGCAGTCCTTTGGTCAGGTTTCAGGCTCTCTCACATCAGAATATGCAATTTCATCCAATAACTTCAAGACATCCACCCCATCCTTAGATGGCAAGGGCACTGGTCACTTGTTTGTAGCACCGAGTGTTCCACATGGGGGGAATATGGATTCTGAAAAAAGGTTGGGTAAAAACACAGAAGATTCACATAAGAATTATATTCAAGATATAGAACAGGGAAGAGAACAGGTTGATCCAGCTCTAAATTCCCTTGGTGGTCTAAATTTTATGAGTCAGTTATCTACAGGAATGCCAAACTTTCAACCCTCCTTGTTGCCTTCTGGATCAAGTATTGATCCTAAGGCATTTCGTGAAATAAATCCAACAATTTCGCACTCTAAACTACTTTATGGGATGCCTGAAGACAAAGGGGCTCAATCAGGTAATATAAAAAATGAGGATGCTTTGCAATCGATTGTCAAAGGATATTCATTTTCATTACCTAATTTAGGAGAGGTTTCCATAAGTAATCCTATGCGTAATTCATCCCCAGGACCTGATTTTCACCATGCTGTTGGAAATGGCCCAAAAAATTCAAGTGAAAATGATCGACAGAATGACATTAAGAGTGAGAGGGAGAAGGTATATAGCAAGGAAGATGGCTGTCAAAGGGAAGGCAGTGGAGCTCGAAACCAGGTACTGCTACAATATTTGAGAGGGAGGCCAGTAGTTCCATTCAATACTTTTGGGGCAGGAACTGCTCTTAGCAGTTCGACAGCCTCTCAAAGTTTTCCTTCTAATTTTTTTTCCTTTCTGAACCCAACGGGTTCTGTTGGTATCGTCCCGACCTCAAATGTCACTCAAACTATGGAACATTATGGCAGGGTCTTCCTCAGCCTGTAGAAATGCATGCTGGCACTGAAAAGGGTAGCCTTTCTGCTCATGCAGAAAAAAATTCTCATGGGATAGCACCCACTTCTGGAGTTGGGGAGGCTCTGAGTAGGTTAGCTTCTTCTAACACAGCCCCCGGGATTTCCTTAGGGCAGCCAAAAGGGGTTCAGCCAAGTACATCTCAACCATTGCATTCCATGTGGTCACAACCTTTCCTTCAGTCATCATTTCCAACAATAAATGGAGTAAATAATGTTTATGGCAGTAGCACTGATGGCTTGACTTCTCTTAGAAGAGATGTTCCTGAAGAAAATCTTATATCAGGAACTGAACACCCAAGGCTTTCAGGGGAAGGGACAACCCTTAGTTGGCCTTCCAATGATGGGCAGGGTAATAATAATGGACTGAGTCTATCATTTGGTGCAGACCACCCTACAGGATAAAAGTTATACACTGAAATGTATTTTGACCTAGAAGAAACGATTATAACTGTGCCAAGGTCTTATGTTGTATATTAGAAGATAACCATTTAGATGACTCTTGGGCACAATTGCAGTTTCTTGTACAAAATTTGAGTAACTAAATATAATTCGTGGTTTCATAGATCC

Ace file of the UniGene sp_v3.0_unigene1876

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TFIIB-related protein (Fragment) n=1 Tax=Spinacia oleracea RepID=Q93YB0_SPIOL	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	TFIIB-related protein	-	-	2.662e-13	-

Source	Gene names
Sma3	3.PEPPER.1; 3.POTATO.1; AT4g36650; At4g36650; C7A10.710; GSVIVT00024961001; LOC_Os03g10070; Os03g0196900; OsI_10382; OsJ_09772; POPTRDRAFT_219145; POPTRDRAFT_593954; RCOM_0536190; TF; pBrp;

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	plastid outer membrane	GO:0009527	Cellular Component	-
Sma3	rDNA binding	GO:0000182	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	transcription initiation, DNA-dependent	GO:0006352	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3		IPR006670	-	-
Sma3	Transcription factor TFIIB, cyclin-related	IPR013150	-	-
Sma3	Cyclin-like	IPR013763	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36650.1	ATPBRP, PBRP plant-specific TFIIB-related protein chr4:17283283-17285527 REVERSE LENGTH=503	83%
RefSeq	Arabidopsis thaliana	NP_195383.1	transcription initiation factor TFIIB [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002310216.1	predicted protein, partial [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMH3

Fln msg: your sequence is longer than subject: 565 - 313

Fln protein: NSNSLSLVDNLRAYLQIVDVSSILGLDRDISDHAIQLFRDCSSAIYLRNRNIEALATAALVQAIREAQEPRTLQEISAAANVQQKEIGKYIKILGDALKLSQPINSNSISVHMPRFCSLLQLNKATQDLATHIGEVVIDKCFCTRRNPISISAAAIYLSCQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWNDLLPSNYTPAVPPEKAFPMTAVALGRASATRGDANGGCLNVTSTLDSSVTVTSGFSSATVLPDLTHGVGSGSSNSTLQSFGQVSGSLTSEYAISSNNFKTSTPSLDGKGTGHLFVAPSVPHGGNMDSEKRLGKNTEDSHKNYIQDIEQGREQVDPALNSLGGLNFMSQLSTGMPNFQPSLLPSGSSIDPKAFREINPTISHSKLLYGMPEDKGAQSGNIKNEDALQSIVKGYSFSLPNLGEVSISNPMRNSSPGPDFHHAVGNGPKNSSENDRQNDIKSEREKVYSKEDGCQREGSGARNQVLLQYLRGRPVVPFNTFGAGTALSSSTASQSFPSNFFSFLNPTGSVGIVPTSNVTQTMEHYGRVFLSL*

Protein Length: 566

Fln nts: TAATAGTAATAGCCTGAGTCTGGTGGATAATTTGAGGGCCTATTTACAGATTGTGGACGTGTCCTCTATTTTGGGCCTGGACAGAGATATCTCCGATCATGCAATACAGCTTTTCAGGGACTGTTCGTCTGCTATTTACCTCCGGAACCGCAATATTGAGGCCCTCGCTACTGCGGCGCTCGTTCAGGCTATCCGCGAGGCGCAGGAGCCCCGGACGTTGCAGGAGATTTCTGCAGCAGCTAATGTACAGCAGAAGGAAATTGGAAAGTATATTAAAATATTAGGTGATGCTCTAAAGTTAAGTCAGCCCATTAACAGCAATTCGATCTCTGTTCACATGCCACGATTTTGTAGTCTGCTTCAACTGAACAAAGCGACTCAGGATCTGGCAACCCACATTGGAGAAGTAGTAATTGACAAATGCTTCTGTACGCGGAGAAATCCCATTAGCATCTCTGCAGCTGCCATCTATCTGTCTTGTCAACTAGAAGACAAACGGAAAACACAAGCTGAAATTTGCAAAGTGACTGGGCTCACTGAGGTAACTTTGCGTAAAGTCTACAAAGAGTTACTTGAAAATTGGAACGATCTACTGCCAAGCAATTACACACCAGCAGTTCCTCCAGAAAAGGCATTTCCAATGACAGCAGTGGCATTGGGCCGTGCTTCTGCTACAAGAGGTGATGCTAATGGTGGATGTCTTAATGTTACTTCTACCTTGGACTCTTCTGTGACTGTGACTTCGGGTTTTTCCAGTGCCACAGTTCTCCCCGATCTTACCCACGGTGTTGGATCAGGCTCAAGTAATTCAACTTTGCAGTCCTTTGGTCAGGTTTCAGGCTCTCTCACATCAGAATATGCAATTTCATCCAATAACTTCAAGACATCCACCCCATCCTTAGATGGCAAGGGCACTGGTCACTTGTTTGTAGCACCGAGTGTTCCACATGGGGGGAATATGGATTCTGAAAAAAGGTTGGGTAAAAACACAGAAGATTCACATAAGAATTATATTCAAGATATAGAACAGGGAAGAGAACAGGTTGATCCAGCTCTAAATTCCCTTGGTGGTCTAAATTTTATGAGTCAGTTATCTACAGGAATGCCAAACTTTCAACCCTCCTTGTTGCCTTCTGGATCAAGTATTGATCCTAAGGCATTTCGTGAAATAAATCCAACAATTTCGCACTCTAAACTACTTTATGGGATGCCTGAAGACAAAGGGGCTCAATCAGGTAATATAAAAAATGAGGATGCTTTGCAATCGATTGTCAAAGGATATTCATTTTCATTACCTAATTTAGGAGAGGTTTCCATAAGTAATCCTATGCGTAATTCATCCCCAGGACCTGATTTTCACCATGCTGTTGGAAATGGCCCAAAAAATTCAAGTGAAAATGATCGACAGAATGACATTAAGAGTGAGAGGGAGAAGGTATATAGCAAGGAAGATGGCTGTCAAAGGGAAGGCAGTGGAGCTCGAAACCAGGTACTGCTACAATATTTGAGAGGGAGGCCAGTAGTTCCATTCAATACTTTTGGGGCAGGAACTGCTCTTAGCAGTTCGACAGCCTCTCAAAGTTTTCCTTCTAATTTTTTTTCCTTTCTGAACCCAACGGGTTCTGTTGGTATCGTCCCGACCTCAAATGTCACTCAAACTATGGAACATTATGGCAGGGTCTTCCTCAGCCTGTAG___AAATGCATGCTGGCACTGAAAAGGGTAGCCTTTCTGCTCATGCAGAAAAAAATTCTCATGGGATAGCACCCACTTCTGGAGTTGGGGAGGCTCTGAGTAGGTTAGCTTCTTCTAACACAGCCCCCGGGATTTCCTTAGGGCAGCCAAAAGGGGTTCAGCCAAGTACATCTCAACCATTGCATTCCATGTGGTCACAACCTTTCCTTCAGTCATCATTTCCAACAATAAATGGAGTAAATAATGTTTATGGCAGTAGCACTGATGGCTTGACTTCTCTTAGAAGAGATGTTCCTGAAGAAAATCTTATATCAGGAACTGAACACCCAAGGCTTTCAGGGGAAGGGACAACCCTTAGTTGGCCTTCCAATGATGGGCAGGGTAATAATAATGGACTGAGTCTATCATTTGGTGCAGACCACCCTACAGGATAAAAGTTATACACTGAAATGTATTTTGACCTAGAAGAAACGATTATAACTGTGCCAAGGTCTTATGTTGTATATTAGAAGATAACCATTTAGATGACTCTTGGGCACAATTGCAGTTTCTTGTACAAAATTTGAGTAACTAAATATAATTCGTGGTTTCATAGATCC

Fln Alignment:

Contig1876___LRAYLQIVDVSSILGLDRDISDHAIQLFRDCSSAIYLRNRNIEALATAALVQAIREAQEPRTLQEISAAAN-VQQKEIGK----YIKILGDALKLSQPINSNSISVHMPRFCSLLQLNKATQDLATHIGEVVIDKCFCTRRNPISISAAAIYLSCQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWNDLLP
B8LMH3______________IMAFKTIGTMSDRLGLVATIKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVGRAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEA--VKKSEELDIRRSPISIAAAAIYMISQLSEEKKLLRDISRATGVAEGTIRNSYKDLYPHAARLIP

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1870		80	20	0.995493
2135	33	66		0.997452
2138		66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain