SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1868

Length: 2576 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene1868
ATGGGGATTGGGAACAAAAGGAGCGCATTGGTTGTTTTCATGATGACCTACCGAGTTTCCTCCACTAGGCGGGAGCGCGAGTCCTCCATCAGAATGCCCTGAAGTTCCATCGAAACCGATTTAATTCCGGATTTGAGACGTCCAGCAAATGCATTTAAAATCTCCGTTTAATTAAGCTCTCCGTCAAACCCTTTCTCGTTCCTTCAAAACCCTCGCCAAGATCTTCCAAAACCCTCGTCAAGATCATAAGCATTTCGTAGATCCTCCAAAACCCTCGTCAAGATCTTAAGCATTTCGTAGCAAAGAGCTTATCAGTTGCGTTTTTCTGACAAATCCATTCCGATTTTCTAAGTGTAACTCCATTTTCTCGGCGAAAACAATCGTTTGTCCGTTTCCTTGTCGAAAACAATTGTTTTGCTGCGACTCTGGACAAAAAGAGAGCCATTTTGGACAAACCAGAAGGACGGAGGGGGTTTTCTCTAGTTTTCTCGTGCAGCAATGGGGGATTACGGCGATGCCTTTATGCGCAACAAAGATGCGGCGGTTCAAGCGCGGACGAAGGCCCAAAATCGAGCCACAGTTCTGCAGTTAAAATTGATAGGGCAAAGTCACCCAACAGGTCTTACTAGCAATCTACTGAAGCTTTTTGAACCACGGCCTCCGCTTGAATATAAGCCACCACCGGAGAAGAGAAAAATGCCATCATACACTGGGATGGCACAGTTTGTCCAAAATTTTGCAGAGCCAGGAGATACTGAGTATGCTCCTCCTGTTCCACATGTTGAAACTCCGACTCAAAGGAGGGCAAGAATACATAGGCTTCGATTGGAGAAAGGTGCTGAACAGGCAGCAAAGGAGCTTGAGAAATATGACCCTAGCAAAGATCCAAATGTGTCAGGAGACCCCTACAAGACACTGTTCGTTGCAAGACTGAGTTATGAGACAACGGAGCATAAGATCAAGAGAGAATTTGAGGTCTATGGGCCTATCAAGCGGGTAGGTATTTTAGAGCAATGCCCAAAGGGGCCTAGACTTGTTGCTCTTGGGTAAGAATTCTTGCTGGATCATGTTTCTGTGTCAGGTTTTGCACTATACATGATGCTTCTGCTCAGTTGTATTTTATAGCTATTGTACTGTTTTTCATCACTCATTCCTAGACTCTGCTCATCATGCTTAGAATTGGAGCCTATGAAAGTTTGTATTTATTTGCGACTTGGGTACGTTGCATTTAAGGTTTTTCTTACAGGAAATTTTCATTCAAGATAAATGTTGATCAAAGTTAACTTTCCACATTAGTCTGCTTGTATTCTTCTAGAATTCCATTTTAAGCATTTAGTTTGCTTTAAGCATATCATCCTTGGTAAGGGGGAAAGCTCCATGTATCTTTTGGTAAGTCAGCCACCTGCATGCTTGTTTTCTGCCAACACAATTGCCATGATGGTGGTGCATTCCCAGTTGAACTTGCGTGGCGAAGCTGTACACCTCAAAGGTTCGTTTGGTCAATGACAATGTTACAAACAAGCCAAGAGGTTATGCATTTGTGGAGTATATGCACACACGTGATATGAAGACTGCCTACAAGCAGGCAGATGGCCGCAAGATAGACAATAAGAGAGTGCTTGTGGATGTTGAGCGTGGAAGAACTGTCCCAAATTGGCGACCTCGAAGGTTGGGTGGTGGCTTGGGATCTACTAGGGTTGGTGGTGAAGAAGTCAATCAAAAGTACTCTGGACGAGAACCTCAGCTACTTTCAGCTGGACCACCACGGATAGAGGAGCCAAAGATAAGAGAAGAGCGGCATGATGATCGTGAAAGGGACAATGATCGTGACCGCGATCGTGACAGGAAGGAGAGGGAACGAGAACTTGAACGATCACATGAGAGGTCACGAGAGAGATCACATGAGCGTAGCCGAGGTAGGGATCGAGATCGAGACTATGATCACGATCGGGATCGTGATGTCACTAGAGAACATGATAGATATCATAGAGAAAGGGACAGAGACAGAGGTGAAAGGGACAGGGACAGAGGTGCGCGGTCGTGATCGTGATCGCCATCGGGAACGTGATCGGCCTCGTGAAAGAGAAAGAGAGAGAGATCGTATAGAACGTTCTCATTCACATGATTATGAACGGGAGAGGTGAACAACTTCATAAAGGTTTTTAACAGTAGGTAAAAAGGGTGAGAACATATTATTCTTTTACAGCATTTTATATTTGCTACAAACAATGAAAATACAACAAGACTTCATTTTAAAGCATTAATGGAACCTATAGTGGCTCTGATAGAGGTGTGTTCAGAAGTTATATAACAGTGAATTTGCAGGCTGGGGTATAGATATTTTGGGAGTAGTTCAAAGCTGATGCCAAATGATTATTGCTGATGTTGATCTATTGGTGCAGTGCTGTGTTCTATTAATGATCTCTCTTTATGCAAGTGTTTTGAATGTTAGGATTATTATGGAGCTGTCGATTCCCCTTTTAAAATCGTTCAAACATTCAATTCTTCCACTATTTTCTTATAATGTGGTTCTGGTAATTTCTTCAACAATTGATGTGTCTTATCCATTTGGAGGC

Ace file of the UniGene sp_v3.0_unigene1868 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	80%
Sma3	U1 snRNP	-	-	3.506e-09	-

Source	Gene names
Sma3	At3g50670; At5g53440; GSVIVT00024956001; LOC_Os10g02630; MICPUCDRAFT_56455; OSJNBa0092N12.2; Os10g0115600; OsI_32563; OsJ_30528; PHATRDRAFT_9806; PHYPADRAFT_122893; PHYPADRAFT_151189; POPTRDRAFT_219158; RCOM_0522060; RCOM_0536950; RCOM_1177140; RNU1; T3A5

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G50670.1	U1-70K, U1SNRNP U1 small nuclear ribonucleoprotein-70K chr3:18826476-18829492 REVERSE LENGTH=427	75%
RefSeq	Arabidopsis thaliana	NP_850676.1	U1 small nuclear ribonucleoprotein-70K [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002310221.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GWX4

Fln msg: Separated hits, possible frame ERROR between 1008 and 1487, your sequence is longer than subject: 516 - 356

Fln protein: MGDYGDAFMRNKDAAVQARTKAQNRATVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEYKPPPEKRKMPSYTGMAQFVQNFAEPGDTEYAPPVPHVETPTQRRARIHRLRLEKGAEQAAKELEKYDPSKDPNVSGDPYKTLFVARLSYETTEHKIKREFEVYGPIKRVGIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVRLVNDNVTNKPRGYAFVEYMHTRDMKTAYKQADGRKIDNKRVLVDVERGRTVPNWRPRRLGGGLGSTRVGGEEVNQKYSGREPQLLSAGPPRIEEPKIREERHDDRERDNDRDRDRDRKERERELERSHERSRERSHERSRGRDRDRDYDHDRDRDVTREHDRYHRERDRDRGERDRDRGARS*

Protein Length: 517

Fln nts: ATGGGGATTGGGAACAAAAGGAGCGCATTGGTTGTTTTCATGATGACCTACCGAGTTTCCTCCACTAGGCGGGAGCGCGAGTCCTCCATCAGAATGCCCTGAAGTTCCATCGAAACCGATTTAATTCCGGATTTGAGACGTCCAGCAAATGCATTTAAAATCTCCGTTTAATTAAGCTCTCCGTCAAACCCTTTCTCGTTCCTTCAAAACCCTCGCCAAGATCTTCCAAAACCCTCGTCAAGATCATAAGCATTTCGTAGATCCTCCAAAACCCTCGTCAAGATCTTAAGCATTTCGTAGCAAAGAGCTTATCAGTTGCGTTTTTCTGACAAATCCATTCCGATTTTCTAAGTGTAACTCCATTTTCTCGGCGAAAACAATCGTTTGTCCGTTTCCTTGTCGAAAACAATTGTTTTGCTGCGACTCTGGACAAAAAGAGAGCCATTTTGGACAAACCAGAAGGACGGAGGGGGTTTTCTCTAGTTTTCTCGTGCAGCA_-_ATGGGGGATTACGGCGATGCCTTTATGCGCAACAAAGATGCGGCGGTTCAAGCGCGGACGAAGGCCCAAAATCGAGCCACAGTTCTGCAGTTAAAATTGATAGGGCAAAGTCACCCAACAGGTCTTACTAGCAATCTACTGAAGCTTTTTGAACCACGGCCTCCGCTTGAATATAAGCCACCACCGGAGAAGAGAAAAATGCCATCATACACTGGGATGGCACAGTTTGTCCAAAATTTTGCAGAGCCAGGAGATACTGAGTATGCTCCTCCTGTTCCACATGTTGAAACTCCGACTCAAAGGAGGGCAAGAATACATAGGCTTCGATTGGAGAAAGGTGCTGAACAGGCAGCAAAGGAGCTTGAGAAATATGACCCTAGCAAAGATCCAAATGTGTCAGGAGACCCCTACAAGACACTGTTCGTTGCAAGACTGAGTTATGAGACAACGGAGCATAAGATCAAGAGAGAATTTGAGGTCTATGGGCCTATCAAGCGGGTAGGTATTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGGTTCGTTTGGTCAATGACAATGTTACAAACAAGCCAAGAGGTTATGCATTTGTGGAGTATATGCACACACGTGATATGAAGACTGCCTACAAGCAGGCAGATGGCCGCAAGATAGACAATAAGAGAGTGCTTGTGGATGTTGAGCGTGGAAGAACTGTCCCAAATTGGCGACCTCGAAGGTTGGGTGGTGGCTTGGGATCTACTAGGGTTGGTGGTGAAGAAGTCAATCAAAAGTACTCTGGACGAGAACCTCAGCTACTTTCAGCTGGACCACCACGGATAGAGGAGCCAAAGATAAGAGAAGAGCGGCATGATGATCGTGAAAGGGACAATGATCGTGACCGCGATCGTGACAGGAAGGAGAGGGAACGAGAACTTGAACGATCACATGAGAGGTCACGAGAGAGATCACATGAGCGTAGCCGAGGTAGGGATCGAGATCGAGACTATGATCACGATCGGGATCGTGATGTCACTAGAGAACATGATAGATATCATAGAGAAAGGGACAGAGACAGAGGTGAAAGGGACAGGGACAGAGGTGCGCGGTCGTGA___TCGTGATCGCCATCGGGAACGTGATCGGCCTCGTGAAAGAGAAAGAGAGAGAGATCGTATAGAACGTTCTCATTCACATGATTATGAACGGGAGAGGTGAACAACTTCATAAAGGTTTTTAACAGTAGGTAAAAAGGGTGAGAACATATTATTCTTTTACAGCATTTTATATTTGCTACAAACAATGAAAATACAACAAGACTTCATTTTAAAGCATTAATGGAACCTATAGTGGCTCTGATAGAGGTGTGTTCAGAAGTTATATAACAGTGAATTTGCAGGCTGGGGTATAGATATTTTGGGAGTAGTTCAAAGCTGATGCCAAATGATTATTGCTGATGTTGATCTATTGGTGCAGTGCTGTGTTCTATTAATGATCTCTCTTTATGCAAGTGTTTTGAATGTTAGGATTATTATGGAGCTGTCGATTCCCCTTTTAAAATCGTTCAAACATTCAATTCTTCCACTATTTTCTTATAATGTGGTTCTGGTAATTTCTTCAACAATTGATGTGTCTTATCCATTTGGAGGC

Fln Alignment:

Contig1868___MGDYGDAFMRNKDAAVQARTKAQNRATVLQLKLIGQSHPTGLTSNLLKLFXXXXXXXXXXXXXXXKMPSYTGMAQFVQNFAEPGDTEYAPPVPHVETPTQRRARIHRLRLEKGAEQAAKELEKYDPSKDPNVSGDPYKTLFVARLSYETTEHKIKREFEVYGPIKRVGILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVRLVNDNVTNKPRGYAFVEYMHTRDMKTAYKQADGRKIDNKRVLVDVERGRTVPNWXXXXXXXXXXXXXXXGEEVNQKYSGREPQ
F6GWX4______________MGDYNDALMRNNNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPYTGMAQFASNFAEPGEPEYSPPVQKAETPAQRRARIHKLRLEKGAEKATEEFQKYDPNNDPNISGDPYKTLFVARLNYETTESRIKREFEAYGPIKRVRLIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVRLITDKETSKPRGYAFIEYMHTRDMKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNPKYSGREQQ

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1473			90	10	0.90298
1474	90			10	0.90298
1485	77		22		0.999999
1555	75	25			1.0
1664			90	10	0.90298
1692		11		88	0.923564
1702		88		11	0.923564
2124	20		80		0.995493
2125		20		80	0.995493
2138	10		90		0.90298
2140	10			90	0.90298
2141		90		10	0.90298
2202	16		83		0.994512
2203		16		83	0.994512
2204	16			83	0.994512
2284	11		88		0.923564
2285	88			11	0.923564
2286	88			11	0.923564
2316	12		87		0.992554
2356	85			14	0.993533
2379		16	83		0.994512
2380	80	20			0.995493
2381	80	20			0.995493
2383	20		80		0.995493
2384	75			25	0.996473
2419		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain