SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1824

Length: 1406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1824 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	0.0	41%
FL-Next	tr=Putative TIR-NBS-LRR protein; Pinus monticola (Western white pine) (Strobus monticola).	-	-	0.0	41%

Source	Gene names
Sma3	RGA;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	apoptotic process	GO:0006915	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-
Sma3	NB-ARC	IPR002182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E9NZS6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 568 aas, your sequence is shorter than subject: 339 - 1490

Fln protein: GKNDHRTCQEGLEIARNILSRLRISYDSLVEEEQEIFLDIACFSIGNDRDTWIGIWDESGWKGLVGFQNLMDKYLVEVNTENKIVLHSWLTWLGRDLVRDLVRDKVPRRFWRATIEDLREQLSSGITQVRGIRMYRGDAIGDSMVGGLEPFGMISNLHFLEAEGSVVESILTKVRSPKLMWLRWINCPHSSLPPWLPMHDLRVLEVAGKELKILWKCESQAPMHLRELIVDAPLSKFPKSLEQLKHLKMIEAKDAYLATLPEEFCYLPFLKYLKLKDYQILPDPHGNFSNIQLTDGRNQESISDSMDNLKNLNFTDLERCTSLEMLLTAIVWRHFQSP*

Protein Length: 340

Fln nts: TGGAAAAAATGATCATCGTACATGTCAAGAAGGACTGGAAATTGCAAGAAACATACTGTCGCGTCTTCGCATTTCTTATGACTCCCTCGTTGAAGAAGAGCAGGAAATTTTCCTAGATATTGCGTGTTTTTCTATAGGAAATGACAGGGATACGTGGATAGGAATATGGGATGAATCCGGGTGGAAAGGTTTGGTGGGATTTCAAAATCTAATGGATAAGTATCTTGTTGAAGTGAACACTGAAAATAAGATAGTATTGCACAGTTGGTTAACATGGTTAGGAAGAGATTTGGTAAGAGATTTGGTAAGAGATAAAGTGCCGCGGCGTTTTTGGAGGGCAACCATAGAGGATCTGCGGGAGCAATTGTCATCTGGGATAACGCAAGTCCGCGGAATTAGAATGTATCGCGGAGATGCTATCGGAGATTCTATGGTCGGCGGCCTTGAGCCGTTCGGAATGATCAGTAACTTGCATTTCCTTGAAGCTGAAGGCAGTGTTGTAGAAAGCATATTGACAAAGGTGCGGTCCCCGAAACTCATGTGGCTCCGCTGGATTAATTGTCCCCACTCTTCCCTGCCTCCCTGGCTTCCGATGCACGATTTAAGAGTTTTAGAAGTGGCCGGGAAGGAATTGAAAATATTGTGGAAATGTGAATCTCAGGCGCCTATGCACTTGCGAGAATTGATCGTTGATGCTCCACTTTCGAAGTTTCCAAAGTCATTAGAGCAGCTGAAGCACCTTAAAATGATTGAAGCGAAGGATGCGTATCTGGCAACGCTACCAGAAGAATTTTGTTACCTGCCTTTTTTAAAATATTTAAAGCTAAAAGACTACCAGATTCTTCCAGATCCGCACGGGAATTTCAGCAATATCCAACTGACCGACGGAAGAAATCAGGAGAGCATTTCAGATTCCATGGACAATTTAAAGAATCTCAATTTCACCGATCTGGAGCGTTGCACAAGTTTGGAGATGCTTCTCACAGCTATAGTTTGGAGACACTTCCAAAGTCCTTAGGGAAGTTAATAAAGTTCCAACGCATCCATCTGAGGCGGCAGCGGTACAAAAATTTGAACATGTTTCCAAATCTCCAAAGCATGCTTTACATTTGAAGACGCTCCCAGCTTCTTTTGGGAGCTTTATAAATCTGCAACAACAGAGGGCATAATAGTAATGTAAATTTACAGGAGCTACTAGATCGTCAAACTCTGAGGGCATCAAAACCTCAGGTAATCATTTTACCCAAACTCAAGGGGGTCAAGTGGGAGAGATTCTCTATATATTTTATTCCAATAATGTAAATGTAGAGGGCCTGTTAGGTCCTCAAACTCTGATTATAAGGTCATCAGGTTTCTTTGATGTATCCTCTTCTTCTATTGGCAGCAATGTATGATTGACACCATCT

Fln Alignment:

Contig1824___RNILSRLRISYDSLVEEEQEIFLDIACFSIGNDRDTWIGIWDESGWKGLVGFQNLMDKYLVEVNTENK---------IVLHSWLTWLGRDLVRDLVRDKVPRRFWRAT--IEDLREQLSSGITQVRGIRM---------------YRGDAIGDSMVGGLEPFGMISNLHFLEAEGSV--VESILTKVRSPKLMWLRWINCPHSSLPPWLPMHDLRVLEVAGKELKILWKCESQAPMHLRELIVDAPLSKFPKSLEQLKHLKMIEAKDAY-----LATLPEEFCYLPFLKY--LKLKDYQILPDPHGNFS---NIQLTDGRNQESISDSMDNLKNLNFTDLERCTSLEM
E9NZS6______________KDIQKSLQVSYDALEEEEQQIFLDIACFFIGKNRDTAIRVWDASGWDGLLVFQSLLSKCLVEMDIDETESPSHNIYVIRMHDHLRDMGRDLANS---SGFPCRLWRGTKHIEDLL-QLSSKATKVRGIRMSHREQYYKRGYGKVAYSDDESGSSDEDPSFSRYKMKKLQLLDIDVAEDRLKCLLETVDSPKLLWFRWAHCRCSSLPPYIPMENLSVLELESHTLETLWQEDVQAPLKLRELLIHAPLSKIPKSIGQLKHLERMEVVPSWFNKSSIVDIPKEFCDLRSLKHLVLRLSNLSSLPDSFGNLSGLEHIDLSRCSQLERLPDSFGNLIKLKYLDLNNCSNLTL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
749	83	16			0.994512
750	16		83		0.994512
755		83		16	0.994512
756	83			16	0.994512
757		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain