SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1800

Length: 1028 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1800

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein n=4 Tax=Arabidopsis RepID=F4JWA1_ARATH	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	At2g27950; GSVIVT00018091001; GSVIVT00022134001; LOC_Os03g01720; OJ1136_C04.8; OJ1384D03.3; Os02g0823300; Os03g0107500; Os09g0570500; OsI_09507; OsI_09660; OsI_32468; OsJ_08932; OsJ_09106; OsJ_30420; PHYPADRAFT_170876; POPTRDRAFT_725133; POPTRDRAFT_817474

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G04460.1	RING/U-box superfamily protein chr5:1260009-1263695 FORWARD LENGTH=863	70%
RefSeq	Arabidopsis thaliana	NP_196066.2	RING/U-box domain-containing protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002315343.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
416		33		66	0.997452
424		33	66		0.997452
427		66		33	0.997452
428		66	33		0.997452
429	66		33		0.997452
430	66	33			0.997452
433		33	66		0.997452
434	33			66	0.997452
435		33	66		0.997452
436			66	33	0.997452
437	66	33			0.997452
438	33		66		0.997452
498		25		75	0.996473
503	25			75	0.996473
507	75			25	0.996473
508		75	25		0.996473
510	75	25			0.996473
511	75			25	0.996473
514		25	75		0.996473
515	25		75		0.996473
517	75	25			0.996473
518	25			75	0.996473
790		87		12	0.992554
854	16		83		0.994512
855		16		83	0.994512
859	60			20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain