SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1769

Length: 1496 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1769

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAW80858.1\| At5g45290 [Arabidopsis thaliana] gb\|AAW80870.1\| At5g45290 [Arabidopsis thaliana] gb\|AED95227.1\| RING/U-box domain-containing protein [Arabidopsis thaliana]	-	-	9.94922e-44	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Ring finger protein, putative	-	-	8.133e-12	-

Source	Gene names
Sma3	GSVIVT00001211001; GSVIVT00005638001; OJ1562_H01.4; OJ1695_D07.10; Os02g0798600; Os05g0389600; OsI_09301; OsI_19822; OsJ_08736; OsJ_18410; PHYPADRAFT_136470; POPTRDRAFT_578817; POPTRDRAFT_644272; POPTRDRAFT_676687; POPTRDRAFT_762855; POPTRDRAFT_817260; PO

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G45290.2	RING/U-box superfamily protein chr5:18350011-18352092 REVERSE LENGTH=546	56%
RefSeq	Arabidopsis thaliana	NP_199342.2	RING/U-box domain-containing protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002304401.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9N9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 312 - 541

Fln protein: LILG*GGQEV*GHQKPIRSLQGDLGVSLPALNGTEDLIMVT*ETEVTNSKFRVAGHTIFAKVDLDIKVIIQCKQELYNAGTTPTLAQDQFLRTLRSMNDSRRQREERSQMNEGTPHNNSSILEHRSLYLEERRRRARSQVRALQRLSSSFENLAGHERSCIFAGHHRTGRCSCQNVGRTDDSNTRASISRIIMLAEALFEVLDEIHHQSMALSSRSPVSSLGSFPAPDDVVNSMPVRTYNKKENPVNDDDAQCYICLVEYEEGEHMRVLPCHHEFHLLCVDKWLKEVHRVCPLCRGNVCDTSLANHVGGPS*

Protein Length: 313

Fln nts: TCTAATCTTAGGTTAAGGAGGGCAAGAAGTTTAGGGTCATCAGAAGCCTATTCGTTCTTTGCAAGGAGACTTAGGCGTCAGTCTTCCAGCGTTGAACGGAACAGAGGATTTGATAATGGTCACTTGAGAAACAGAAGTGACCAACAGCAAGTTCAGGGTAGCAGGTCACACAATTTTTGCGAAAGTAGACCTAGACATCAAAGTGATCATTCAATGCAAGCAAGAGTTGTACAATGCAGGAACAACACCAACTCTTGCACAAGATCAATTTCTTCGTACTCTTAGATCCATGAATGACAGTCGGAGGCAAAGGGAGGAGAGAAGCCAAATGAACGAAGGTACACCTCATAATAACAGCAGCATACTGGAACATAGAAGCCTCTATCTTGAGGAACGGAGGCGGAGGGCAAGATCTCAGGTCCGAGCTCTGCAACGTTTAAGCAGTAGTTTTGAGAATTTAGCTGGGCATGAGAGGTCGTGTATTTTTGCTGGCCACCATCGTACAGGGCGTTGCTCATGTCAAAACGTTGGAAGGACAGATGACTCAAATACCAGGGCAAGCATCTCAAGGATTATCATGTTGGCAGAAGCTCTGTTTGAGGTTCTGGATGAAATTCATCACCAGTCTATGGCGTTGTCCTCCCGATCCCCAGTTTCCTCGCTTGGATCATTTCCTGCTCCTGATGATGTTGTCAACTCCATGCCAGTCCGGACGTACAACAAAAAAGAAAACCCTGTAAATGACGATGATGCACAGTGCTACATATGTCTTGTGGAGTATGAAGAAGGAGAACATATGAGAGTGTTGCCCTGCCATCACGAATTTCATCTACTTTGTGTTGATAAATGGTTGAAAGAGGTTCACAGAGTTTGCCCACTTTGTCGGGGAAATGTTTGTGACACTAGCCTCGCAAATCATGTGGGGGGGCCATCATAA___GGGTGCTATATATGGTATTTGCATGGAACTCATTTTGAGTTTGATGGACAAAATACCAAGGTGAGGTTGGCATTCTTGAATGAACGCAACCTATTTTGAGAATATATCCTTTCGATGTAAATCTGTGTATTTTATCCCTGGTAAGCACTAGTTTTGTTAGAAAATTCTTTTTTCTACTGAGCTCAATGCAGCTGTAGTTTTTCATCACTTTAAATGAAAGCTTAGTATTGTAGAGTCTATCTGTATATTTCATTTTTAGTCATTTCATATCCATTTTTTTGGAGAAGAGATTAATATTAATTTGTAAGTTTGTAACCATGCTTCACATAATTAGTGCTATTTTTTAATGTAAACTAGTGTCTCAAATATAAAAGTGCAGTAGCAAAGTGAACTGCAAGAGTTATTGTGCCTGACAAGATATGATTTCAACCCAGAATATGTGCTGCAGCCTGCAATCAGTCAGTGAATTGCCTTCCAACTCGAAATTTGGCATTTCTCTGATGTCCAGGGCCATTGTAGTTGGAGTCAATTTTTGTTATAGTGGCAGTTGATCTGGGCA

Fln Alignment:

Contig1769___AGHERSCIFAGHHRTGRCSCQNVGRTDDSNTRASISRIIMLAEALFEVLDEIHHQXXXXXXXXXXXXXXXFPAPDDVVNSMPVRTYN--KKENPVNDDDAQCYICLVEYEEGEHMRVLPCHHEFHLLCVDKWLKEVHRVCPLCRGNVCDTSLAN
D5A9N9______________SGHSRFCA-SGTHADGHCSCEAYVMTEETSTHASISRIVMLAEALFEVLDEIHRQSVALSQSTSLSLVS-LPAPESVVDSFPIRNHKNPEKNENVNDEAAQCYICLAEYEEGDKIRVLPCHHEYHMACVDKWLKEIHRVCPLCRGNVCEQNVAN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
994		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain