SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1756

Length: 1404 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1756

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding KH domain-containing protein [Arabidopsis thaliana] gb\|AAK44097.1\|AF370282_1 putative rev interacting protein mis3 [Arabidopsis thaliana] emb\|CAC08342.1\| rev interacting protein mis3-like [Arabidopsis thaliana] gb\|AAN13132.1\| putative rev inte	-	-	0.0	71%
FL-Next	sp=KRR1 small subunit processome component; Vitis vinifera (Grape).	-	-	0.0	76%

Source	Gene names
Sma3	At5g08420; B1142C05.33; CHLREDRAFT_100228; F8L15_150; GSVIVT00000935001; GSVIVT00007719001; LOC_Os10g31520; MICPUCDRAFT_5117; MICPUN_83398; OSTLU_32864; Os01g0713700; Os01g0713800; Os10g0452800; OsI_03494; OsI_33853; OsJ_03235; OsJ_31745; Ot07g04570; PHAT

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	K Homology domain	IPR004087	-	0.0	-
Sma3		IPR018111	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08420.1	RNA-binding KH domain-containing protein chr5:2713555-2716064 FORWARD LENGTH=391	71%
RefSeq	Arabidopsis thaliana	NP_196459.1	RNA-binding KH domain-containing protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002310107.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6H683

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 254 - 386

Fln protein: MEENGREQMQEERKGRYKGKHDKPKPWDNPDIDHWKVEKFNPSWNETGLLEVSSFSTLFPQYREKYLQDAWPTVTRALTEHGISCQLNLVEGSMSVSTTRKTKDPYIIIKARDLIKLLSRSVPVTQAIKILDDEMHCDIIKIGDITRNKERFVKRRQRLLGPNGSTLKAIELLTGCYVLVQGNTVAAMGSFKGLKQVRRIAEDCIRNIHPIYHIKELMIKRELAKDPELAEENWDRFLPKFKKRNVKQKKLKKK

Protein Length: 255

Fln nts: CCACTGCTTAAGCAGTGGTATCAACGCAGAGTGAGCCGAGAGCACACCACCATTAAGAGGAACTGTTTTTTGAAATCAGACATCAACCCAATTATTAGGTGGGCTTTGTTCACTGGAGGCGAGAGAAGCAGCGGCAGGTCCAAAGCCAGCAGTTTACCTCGCAGTTGAACATACAAATCCATAGACTGTTGAAGCACTCATCGAATATCCAGTGGAAAAGTCAGGACTAGAACCTGTTGTTTACCCATCAGCAGGGGCAAGAACAGCGGAAGCAAGGGTCAAGGTAGAAGTTGAAGGGCCACTACCCCGTACAAATCCTGTTCCAGGGCCATATCCCATTGGAGATCGAGAGCCTATAGACCCAGAGAAAGAGTCAGTTATAAACCCATAGCCTTGCCCTGTAGCTTCCCTTCGCGTGGTTCCAAATCCATGACCCGTTTGTATAGTTATATAGTGGAATAACCATCTTTCAGAACCATCAGTTGACTCAGTTTCTCGAGATCGAGTAGCTATAGTTCGCCCAGCATCTTTGTTAGTTTAAGAAGCAGTCCCACCACTCTTTCAGTATAAGTTAAGGTTTACCTTGAATCAGCAACAAAGCGAGCAGAGCCTGTTTTATATTCCCTAGTTCCGGAGCAACA_-_ATGGAGGAAAATGGGAGAGAGCAGATGCAGGAGGAGAGGAAGGGCCGTTACAAAGGCAAACATGACAAGCCAAAGCCATGGGACAATCCCGACATCGATCACTGGAAAGTTGAGAAATTCAACCCCTCTTGGAACGAAACTGGATTGCTCGAAGTCAGCTCTTTCTCCACTCTCTTTCCACAGTACAGAGAAAAATACTTGCAAGATGCATGGCCTACCGTGACACGCGCTCTGACGGAACATGGTATATCTTGTCAGCTGAATCTTGTTGAGGGATCAATGTCTGTTTCGACAACTCGCAAGACTAAGGATCCTTACATAATTATCAAGGCTCGTGACCTTATCAAACTTTTGTCAAGGAGTGTGCCAGTAACACAAGCAATTAAGATCCTAGATGATGAGATGCATTGTGATATAATTAAAATTGGAGACATCACCCGGAATAAGGAAAGATTTGTCAAACGTCGGCAGCGCTTATTGGGTCCTAATGGTTCAACACTCAAGGCAATTGAGCTATTGACTGGTTGCTATGTTCTTGTTCAGGGTAATACTGTTGCAGCCATGGGCTCATTTAAAGGTTTGAAACAAGTACGCAGAATTGCAGAGGATTGTATTCGTAATATACATCCGATTTATCATATCAAGGAACTCATGATAAAGCGGGAACTTGCAAAAGATCCAGAACTTGCAGAGGAAAATTGGGATAGGTTTTTGCCTAAGTTTAAGAAGAGAAATGTAAAGCAAAAGAAGCTGAAGAAAAAAG

Fln Alignment:

Contig1756___EENGREQMQEERKGRYKGKHDKPKPWDNPDIDHWKVEKFNPSWNETGLLEVSSFSTLFPQYREKYLQDAWPTVTRALTEHGISCQLNLVEGSMSVSTTRKTKDPYIIIKARDLIKLLSRSVPVTQAIKILDDEMHCDIIKIGDITRNKERFVKRRQRLLGPNGSTLKAIELLTGCYVLVQGNTVAAMGSFKGLKQVRRIAEDCIRN-IHPIYHIKELMIKRELAKDPELAEENWDRFLP
F6H683______________ESNGEVEVERKEKTKHKGKHDKPKPWDDPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLP

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
340	71		28		1.0
387		71	28		1.0
392	85		14		0.993533
399		85		14	0.993533
609			28	71	1.0
636			28	71	1.0
690	16		83		0.994512
814		12		87	0.992554
963		11		88	0.923564
993		11		88	0.923564
1382	90	10			0.90298
1384			90	10	0.90298
1385		90		10	0.90298
1390	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain