SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1734

Length: 2120 nt

UniGene Fasta

>sp_v3.0_unigene1734
ATCCAATTTTTTTTGAAGAGGAAAGTTCAGAAAAATTACATATAGAGGGGACATGTTTTAAGTTCAGACCAAGTAAAGGAAGAAGATATGGCAGGCCCGAGTAGCAACGTAGGTGCAGTCCAGGCCACCAACGACGACGCCTCCGCCAGCAAACTATCATGTGCCAAAAAGGGCTATATAAATGACAACTATGTTCAGTTTTTTGTTAGAAGACCAGTGAAAAGATCCCCAATTATTAATCGTGGTTACTATGCACGATGGGCTGCTTTACGGAAGTTACTCCTTCAGTTTCTTGAAGATGGCGCACAAACTATTGAGGGCACCCCTTTGAAAAAGCAAGTAATTTCTCTTGGAGCTGGCTTTGACACAACTTTCTTCCAACTTCAGGAAGAAGGGAAAGCCCCAACACTCTATGTTGAGCTAGATTTTAAAGAGGTAACTAGTAAAAAGGCAGCAATTATTGAGTCCCAAGAACAGATGAGGAACAAGCTTGGGAAGGCACCACGTATTTCACGAGAAAGAGGGGAAGTGCACAGTGAGCAGTACAAACTTCTTCCTTTGGATTTGCGTGATATTAAGGATCTGGATGCAGTTATTAACCTAGCTCAGTTGGATCTGAGCATGCCAACCTTTATCATTGCAGAATGTGTTCTTATCTATTTGGAGCCGTATGCAAGCCATGCATTAGTAAAATGGGCAGCAGAGAAGTTCTCCACTTCAGTGTTTGTCATATATGAACAGATTCATCCAGAGGATGCATTTGGACAACAGATGATCAAAAACTTAGAGAGTCGGGGCTCTCCTCTTCTTGGTCTAAATGACACACCATCTTTGGAGGCCAAGGAAAAACTTTTCACAGATTCTGGCTGGCAGAAGGCAACTGCTATTGACATGAATACCATATACAATAAATACCTGAATTTACCAGAAAGGCGCAGGATTGAGCGGCTAGAAATGTTTGACGAGTTTGAGGAATGGCATATGATGCAGGAGCATTACTGTATTGCTTATGGGATCATAGATCCAAAGGGCTTGTTCAAAAATTTTGGCTTTTCCAACACGTAGTCTACTGGATAAGCAACTTAATTATCTTTACGGTGCAAATCTTCTACAGAGTATGGTAAATACAGTTTAGCTGTGGAAACGGAGAGGGTTTAATTCAAATTCACTTGTGTGATAGGTAATAACATGCTGAAATTTTAGAACTTTTGTCAAGGACGTTTTACTGGGATCAATTCTAACTCGAAAGAAACTCTAGTTCTATCTTCTGAATGTTGCGTAGTTGTTCAGAACTTGACATTTTTCCTAGAAATTTGTATTTACGCAGAGGAAAGTAAACGATTTTCTGAATTGACATTGATTTTAAAATAAAAGTTGCTGGGTTTCGGTGCTACTTTTTGATGACTCAACTGTAACTGCACTAAGAAGATTGGAATGATTGTAAATGACTAATTCTGAAGTGTGAAATGGCAGGCCTTGTGATCCCTATAAGATAATCCCGTATGGTTTGCTTGCTGAAGCAAACTATTGCCAATTAAGAAAATTCTTGAGTAACCGATGATATATATGATATACATGCTAGACAAACTTCTAAATGAAGGCAAGTGGTTCAGTATTTTTGGCATCTCGTGCAACTTTAGCCAGAGTTGGAATTGGTAACTTCAGAAAATAAAATTTTGTCAAGTATTTATGACAAGCTTGTGGATGATGCAATGCAAAGAGTTAGTAGGCATCATGTGCTTTTAACCATGACAGTAGCATTCTTGTTCGACTGCAGTTGGACCTTTAGGAGTAATCATTTGCTGCAAGATTAGTGAGTAGTTCTAACTTATATATATTTGAAATCAAATTGCTTAACTAATGGATTTACGGTCATGTTTTAATTGTTGAAATGGGATCTCACTGATATTATTTAGCCGTCCTACTTATATGATGTATAATCCTGTGACTTTATAATACATGCCATCATGGATTCTTCTAGTAATGCCGATGATAATCTCCATGAGATCCTAGAATGAATGGGGTTATTATAGTTGGGATCCATATAGTAGAACTTTTCTAAAATGATACAAGGTCATTTTTTTCAGTGCTTTGTTCTTCCTAGTATCATGGTGTGGAAA

Ace file of the UniGene sp_v3.0_unigene1734

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine carboxyl methyl transferase [Brachypodium sylvaticum]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	57h21.14; At1g02100; CHLREDRAFT_145893; GSVIVT00019089001; GSVIVT00019090001; MICPUN_79928; OSJNBa0041F13.37; Os06g0140100; OsI_21566; OsJ_20064; PHYPADRAFT_115642; POPTRDRAFT_286543; RCOM_1608280; T7I23.16; VITISV_024939;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine carboxyl methyltransferase	IPR007213	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Leucine carboxyl methyltransferase, LCTM1 1	IPR016651	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02100.3	-	63%
RefSeq	Arabidopsis thaliana	NP_973741.1	Leucine carboxyl methyltransferase [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002327049.1	predicted protein, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9K3

Fln msg:

Fln protein: MAGPSSNVGAVQATNDDASASKLSCAKKGYINDNYVQFFVRRPVKRSPIINRGYYARWAALRKLLLQFLEDGAQTIEGTPLKKQVISLGAGFDTTFFQLQEEGKAPTLYVELDFKEVTSKKAAIIESQEQMRNKLGKAPRISRERGEVHSEQYKLLPLDLRDIKDLDAVINLAQLDLSMPTFIIAECVLIYLEPYASHALVKWAAEKFSTSVFVIYEQIHPEDAFGQQMIKNLESRGSPLLGLNDTPSLEAKEKLFTDSGWQKATAIDMNTIYNKYLNLPERRRIERLEMFDEFEEWHMMQEHYCIAYGIIDPKGLFKNFGFSNT*

Protein Length: 327

Fln nts: ATCCAATTTTTTTTGAAGAGGAAAGTTCAGAAAAATTACATATAGAGGGGACATGTTTTAAGTTCAGACCAAGTAAAGGAAGAAGAT_-_ATGGCAGGCCCGAGTAGCAACGTAGGTGCAGTCCAGGCCACCAACGACGACGCCTCCGCCAGCAAACTATCATGTGCCAAAAAGGGCTATATAAATGACAACTATGTTCAGTTTTTTGTTAGAAGACCAGTGAAAAGATCCCCAATTATTAATCGTGGTTACTATGCACGATGGGCTGCTTTACGGAAGTTACTCCTTCAGTTTCTTGAAGATGGCGCACAAACTATTGAGGGCACCCCTTTGAAAAAGCAAGTAATTTCTCTTGGAGCTGGCTTTGACACAACTTTCTTCCAACTTCAGGAAGAAGGGAAAGCCCCAACACTCTATGTTGAGCTAGATTTTAAAGAGGTAACTAGTAAAAAGGCAGCAATTATTGAGTCCCAAGAACAGATGAGGAACAAGCTTGGGAAGGCACCACGTATTTCACGAGAAAGAGGGGAAGTGCACAGTGAGCAGTACAAACTTCTTCCTTTGGATTTGCGTGATATTAAGGATCTGGATGCAGTTATTAACCTAGCTCAGTTGGATCTGAGCATGCCAACCTTTATCATTGCAGAATGTGTTCTTATCTATTTGGAGCCGTATGCAAGCCATGCATTAGTAAAATGGGCAGCAGAGAAGTTCTCCACTTCAGTGTTTGTCATATATGAACAGATTCATCCAGAGGATGCATTTGGACAACAGATGATCAAAAACTTAGAGAGTCGGGGCTCTCCTCTTCTTGGTCTAAATGACACACCATCTTTGGAGGCCAAGGAAAAACTTTTCACAGATTCTGGCTGGCAGAAGGCAACTGCTATTGACATGAATACCATATACAATAAATACCTGAATTTACCAGAAAGGCGCAGGATTGAGCGGCTAGAAATGTTTGACGAGTTTGAGGAATGGCATATGATGCAGGAGCATTACTGTATTGCTTATGGGATCATAGATCCAAAGGGCTTGTTCAAAAATTTTGGCTTTTCCAACACGTAG___TCTACTGGATAAGCAACTTAATTATCTTTACGGTGCAAATCTTCTACAGAGTATGGTAAATACAGTTTAGCTGTGGAAACGGAGAGGGTTTAATTCAAATTCACTTGTGTGATAGGTAATAACATGCTGAAATTTTAGAACTTTTGTCAAGGACGTTTTACTGGGATCAATTCTAACTCGAAAGAAACTCTAGTTCTATCTTCTGAATGTTGCGTAGTTGTTCAGAACTTGACATTTTTCCTAGAAATTTGTATTTACGCAGAGGAAAGTAAACGATTTTCTGAATTGACATTGATTTTAAAATAAAAGTTGCTGGGTTTCGGTGCTACTTTTTGATGACTCAACTGTAACTGCACTAAGAAGATTGGAATGATTGTAAATGACTAATTCTGAAGTGTGAAATGGCAGGCCTTGTGATCCCTATAAGATAATCCCGTATGGTTTGCTTGCTGAAGCAAACTATTGCCAATTAAGAAAATTCTTGAGTAACCGATGATATATATGATATACATGCTAGACAAACTTCTAAATGAAGGCAAGTGGTTCAGTATTTTTGGCATCTCGTGCAACTTTAGCCAGAGTTGGAATTGGTAACTTCAGAAAATAAAATTTTGTCAAGTATTTATGACAAGCTTGTGGATGATGCAATGCAAAGAGTTAGTAGGCATCATGTGCTTTTAACCATGACAGTAGCATTCTTGTTCGACTGCAGTTGGACCTTTAGGAGTAATCATTTGCTGCAAGATTAGTGAGTAGTTCTAACTTATATATATTTGAAATCAAATTGCTTAACTAATGGATTTACGGTCATGTTTTAATTGTTGAAATGGGATCTCACTGATATTATTTAGCCGTCCTACTTATATGATGTATAATCCTGTGACTTTATAATACATGCCATCATGGATTCTTCTAGTAATGCCGATGATAATCTCCATGAGATCCTAGAATGAATGGGGTTATTATAGTTGGGATCCATATAGTAGAACTTTTCTAAAATGATACAAGGTCATTTTTTTCAGTGCTTTGTTCTTCCTAGTATCATGGTGTGGAAA

Fln Alignment:

Contig1734___MAGPSSNVGAVQATNDDASASKLSCAKKGYINDNYVQFFVRRPVKRSPIINRGYYARWAALRKLLLQFLEDGAQTIEGTPLKKQVISLGAGFDTTFFQLQEEGKAPTLYVELDFKEVTSKKAAIIESQEQMRNKLGKAPRISRERGEVHSEQYKLLPLDLRDIKDLDAVINLAQLDLSMPTFIIAECVLIYLEPYASHALVKWAAEKFSTSVFVIYEQIHPEDAFGQQMIKNLESRGSPLLGLNDTPSLEAKEKLFTDSGWQKATAIDMNTIYNKYLNLPERRRIERLEMFDEFEEWHMMQEHYCIAYGIIDPKGLFKNFGFSNT
D5A9K3______________MAGHSSNVGAVQATNDDASASKLSCAKKGYIKDNYVQFFVRRPVKRSPIINRGYYARWAALRKLLLQFLEDGAQTVEDTPLKKQVLSLGAGFDTTFFQLQEEGKAPTLYVELDFKEVTSKKAAIIESLEQLRNKLGNAPCISREKGEVHSEQYKLLPVDLRDIKNLDAVFDLAQLDPSLPTFIIAECVLIYLEPYASHGLVKWAAEKFSISVFVIYEQIHPEDAFGQQMIKNLESRGCPLLGLNDTPSLEAKEKLFTDLGWQKATAFDMNTIYNKYLNLQERRRIERLEMFDEFEEWHMMQEHYCIAYGIIDPKGLFQNFGFSNT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
95			83	16	0.999991
252	85		14		0.993533
418		14		85	0.993533
419	12		87		0.992554
421			87	12	0.992554
422		87	12		0.992554
444	11		88		0.923564
878	10		90		0.90298
886		11		88	0.923564
1280	18		81		1.0
1323	50		50		1.0
1335	10		90		0.90298
1336		10		90	0.90298
1338	88			11	0.923564
1339	88			11	0.923564
1917	33			66	0.997452
1970		66		33	0.997452
1989	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain