SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1690

Length: 2870 nt

UniGene Fasta

>sp_v3.0_unigene1690
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGATGACAGTGGGTGCACATGGATGAGGGCCTGGTCTTCTTACTGAATTTCCGCTGGCATTCTTTTGCAGTCGTGTTGGGCTCAGATATCTATTGGTCTTTTTGTGTATGAAGCTCAAAGGGCATTAGTTGGTGTTTTGATTGGAGATGTAATGGGTTATTGATAAGGGAGAAGCAAGTTGAGGGGAGACAAAGCTGGCAGTAACATTAGTAGAGTCCCAGGTGAAGGGTAGGAGCTTGATGTATTTACAATATGACTAAAGGATTCATAGTTGCTCCTCATATGAAGAAGCACTGGTGGCTCACTAACAAAAAGCTTGCAGAAAAACATTTGAGCAATGCCCGGGCCTTACTTGGAAGTCAAGAACCGACTGAGATCTATTCTGCACTTAATCTGCTCGATAATGCTCTTGATTTATGTCCAAGATGGGAGAAGGCTTTGGAACTTAAAGCAAGGGCCTTTTTGTATCTTAAGGAAATTCAGAGATGTGGCAAATATGCTGCAAGAATATATCCCAAGCCTAAGGTTTAGGGAGATTGTCCCATCTGAAAGCCCACCAGTGTCCAAAGAGATGTCAAGAGATCAAGTGAGGCTTCTTCCGAACTATGAAGAGAGTAGCAGACTCAGGGCCAATGTCTTTCTCAAATGCTTTTCGGTCTACCAATTGAAGAAAAAGCTTTTAGCTGGGTTGTCTAGGCGATGCGAGAGGGAAGAATGGCGATATTTGGTTCTTGGACAAGCATGTTGCCATTTAGGAATGATGGAGGATGCATTGGTTTTGCTCCAGAGTGGAAAAAGGGTTGCTTCTGCCGCCTTTAGAAGAGAAAGCACATCTCGCAATGATGATAGCTTTTGCTCTGAGAATTCTGCTTCAGAATCAGAGATTGTTAGCCATTTGCTTGGAAATATTAAACTTCTACTGAGGAGAAAAGCAGCTGCTGCGGCTGCACTAGATGCTGGTCTCTACTCAGAATCAGTAAGGCATTTTACAAAAATTCTGGATGGAAGAAGAGGCACCCCTCAAGGCTTCATATCAGAATGCTATATGTTGCGAGCAACAGCTTATCAAGCGGCGGGACGAGTGACTGATTCAATAGCTGATTGCAATAGGACACTTGCATTAGATCCTGTTTGCATTGAAGCTTTAACCACACGGGCTGCCCTGTTTGAAACTGCAAGATGCTTCTCTGAGAGCTTGCAAGATCTGGAACATCTAAGATTGCTTTATGAGTCCACTCTTCGCCAGCAGAAGTTTCCAGGACCTGTTTGGAAGCCTCAAAAACTGAATTTTAGGGATATCCATGGAAACCTTCAATTTTTGAAGTCTAAGATTCTTAATATGAAGCAAAGGCTATCGAGTCCTTTTACAATTGATTATTACACTCTTATTGGTTTGAGAAGAGGTTGCACAAGGGCAGATGTCGAACGTGCACATCTTTTACTTTGCCTAAGGCATAGGCCTGATAAAGCTTCTCATTTTGTTGATCGCTGCGAGTTTGTGGATGAAAGAGATATTGACGCTGTTAAAGATCAGGCTCGTCTCTCGGCCTTGATGCTGTATAGATTGTTACAGAAGGCCTACACATATATAATGACTTCTATCATGGAAGAAGAAGCCGAGAAGCAAAATCAGCTAAGGGTCAGTGAATTAAAATGTGAAGAGCCTGATAAGCAGGGTGCTAGAGAACCTGAGCAGTGTCTTCAAGTTAGAAGTGAACCTCATATTGATGTAAAAGTTGATTTCAAGAAATCAGATTGCTGTATAGAGAGTGAAGCAAGTAACATGAGGGCCAAATCTTCGGGTTCCAACAAAAACGTTGTTAATGGTGAGCTTCAACAGATTTTATTGGCAACAAGTTCGGTGACTGATCGGACATTGATGAATACTACTTCTGGGGTAGCTGGGGTAGCTGCTGTTCCCAGGATCAATGATACTTCTGAGTTTAGCATATACACTTCTGTTAAGGAGGATTCAAGCCCGCAGGAGTTGGCAGATACTTCTGTATTTCAAGCAGTCTCGTGTAGAGATTTAGTGGCTGTCGGGACAATGTTATCACATGGATTCCCTTCGGAAAGTTGGATGAATGCACATCAAGGACATGCCATAAGGCCCCTTCCAGTCACTTATGAAGCACTTAGTTGTTAAGCTAATGCGGTAAATCAATATCATATACTATATGGTTGGTTCCGATCCACTTAGAAGTTCTTCAGATGATATGCAGACCAGTGACTAAAGGGGATGCCAAAGACCTAGGAATGTAATTGAAAAACCTTTATCCTGCACAGCAGTTTTTTCAACAGCAATAAACATCTGGCTTTTCGTTTTGGGGAGACAACAGCCTTCACCTGATCCGTAAGCAGCAGACATGGACCAGCAATCAAGGACCAATGGTGGTGATTGTGATCAAATCAGAAAAAATTGCTCCACCAAAGATATTTTGTAGCAGGAAAACCACCTTGAGCACAGCAGGTTGGTTGGAAGTGTTGAGGACATTTGGTGGTTTCAATGGACAATGTCTCTGAGATTTTGTAGCACTGGCTTATAAAGATCAAACTTGTCATTTGACTGTTTGTAGTGGTCAATCTTCTCAGTTGACTGGATGGATTCTCCCATTTCTATAACATTCCAAAGCAATGTCATAGATATTGCATCTTTTGGTGGAAGACTGTGCTTTTTCTTTGTAAATACAATCTTTAATGTCAAAACTGGAACAAATGTTATGCTTTTCTGTGAGTAGATCACGTGTGCTTTTGGTAATATGCAGTGTACTTTTTGTTATAATGTATCCATTTGCTGCCCATTTTATAAAACATTGGTACAGCTGTACTACAAT

Ace file of the UniGene sp_v3.0_unigene1690

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ domain containing protein	-	-	0.0001	29%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	57%

Source	Gene names
Sma3	AT4g02100; At1g02650; At2g47440; At3g62570; At4g02100; GSVIVT00028093001; Os07g0689800; OsI_27419; OsJ_25662; P0597G07.116; POPTRDRAFT_552515; POPTRDRAFT_774720; RCOM_1347440; T10M13.11; T14P4.7; VITISV_036192;

Source	GOs	Term	Type	e value	Identity
Sma3	vacuole	GO:0005773	Cellular Component	0.0	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47440.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr2:19469912-19471660 FORWARD LENGTH=526	51%
RefSeq	Arabidopsis thaliana	NP_182266.1	tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002320311.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: G7KSS0

Fln msg: Overlapping hits, possible frame ERROR between 519 and 506, your sequence is longer than subject: 632 - 574

Fln protein: MTKGFIVAPHMKKHWWLTNKKLAEKHLSNARALLGSQEPTEIYSALNLLDNALDLCPRWEKALELKARAFLYxxxxxxDVANMLQEYIPSLRFREIVPSESPPVSKEMSRDQVRLLPNYEESSRLRANVFLKCFSVYQLKKKLLAGLSRRCEREEWRYLVLGQACCHLGMMEDALVLLQSGKRVASAAFRRESTSRNDDSFCSENSASESEIVSHLLGNIKLLLRRKAAAAAALDAGLYSESVRHFTKILDGRRGTPQGFISECYMLRATAYQAAGRVTDSIADCNRTLALDPVCIEALTTRAALFETARCFSESLQDLEHLRLLYESTLRQQKFPGPVWKPQKLNFRDIHGNLQFLKSKILNMKQRLSSPFTIDYYTLIGLRRGCTRADVERAHLLLCLRHRPDKASHFVDRCEFVDERDIDAVKDQARLSALMLYRLLQKAYTYIMTSIMEEEAEKQNQLRVSELKCEEPDKQGAREPEQCLQVRSEPHIDVKVDFKKSDCCIESEASNMRAKSSGSNKNVVNGELQQILLATSSVTDRTLMNTTSGVAGVAAVPRINDTSEFSIYTSVKEDSSPQELADTSVFQAVSCRDLVAVGTMLSHGFPSESWMNAHQGHAIRPLPVTYEALSC*

Protein Length: 633

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGATGACAGTGGGTGCACATGGATGAGGGCCTGGTCTTCTTACTGAATTTCCGCTGGCATTCTTTTGCAGTCGTGTTGGGCTCAGATATCTATTGGTCTTTTTGTGTATGAAGCTCAAAGGGCATTAGTTGGTGTTTTGATTGGAGATGTAATGGGTTATTGATAAGGGAGAAGCAAGTTGAGGGGAGACAAAGCTGGCAGTAACATTAGTAGAGTCCCAGGTGAAGGGTAGGAGCTTGATGTATTTACAAT_-_ATGACTAAAGGATTCATAGTTGCTCCTCATATGAAGAAGCACTGGTGGCTCACTAACAAAAAGCTTGCAGAAAAACATTTGAGCAATGCCCGGGCCTTACTTGGAAGTCAAGAACCGACTGAGATCTATTCTGCACTTAATCTGCTCGATAATGCTCTTGATTTATGTCCAAGATGGGAGAAGGCTTTGGAACTTAAAGCAAGGGCCTTTTTGTATxxxxxxxxxxxxxxxxxxGATGTGGCAAATATGCTGCAAGAATATATCCCAAGCCTAAGGTTTAGGGAGATTGTCCCATCTGAAAGCCCACCAGTGTCCAAAGAGATGTCAAGAGATCAAGTGAGGCTTCTTCCGAACTATGAAGAGAGTAGCAGACTCAGGGCCAATGTCTTTCTCAAATGCTTTTCGGTCTACCAATTGAAGAAAAAGCTTTTAGCTGGGTTGTCTAGGCGATGCGAGAGGGAAGAATGGCGATATTTGGTTCTTGGACAAGCATGTTGCCATTTAGGAATGATGGAGGATGCATTGGTTTTGCTCCAGAGTGGAAAAAGGGTTGCTTCTGCCGCCTTTAGAAGAGAAAGCACATCTCGCAATGATGATAGCTTTTGCTCTGAGAATTCTGCTTCAGAATCAGAGATTGTTAGCCATTTGCTTGGAAATATTAAACTTCTACTGAGGAGAAAAGCAGCTGCTGCGGCTGCACTAGATGCTGGTCTCTACTCAGAATCAGTAAGGCATTTTACAAAAATTCTGGATGGAAGAAGAGGCACCCCTCAAGGCTTCATATCAGAATGCTATATGTTGCGAGCAACAGCTTATCAAGCGGCGGGACGAGTGACTGATTCAATAGCTGATTGCAATAGGACACTTGCATTAGATCCTGTTTGCATTGAAGCTTTAACCACACGGGCTGCCCTGTTTGAAACTGCAAGATGCTTCTCTGAGAGCTTGCAAGATCTGGAACATCTAAGATTGCTTTATGAGTCCACTCTTCGCCAGCAGAAGTTTCCAGGACCTGTTTGGAAGCCTCAAAAACTGAATTTTAGGGATATCCATGGAAACCTTCAATTTTTGAAGTCTAAGATTCTTAATATGAAGCAAAGGCTATCGAGTCCTTTTACAATTGATTATTACACTCTTATTGGTTTGAGAAGAGGTTGCACAAGGGCAGATGTCGAACGTGCACATCTTTTACTTTGCCTAAGGCATAGGCCTGATAAAGCTTCTCATTTTGTTGATCGCTGCGAGTTTGTGGATGAAAGAGATATTGACGCTGTTAAAGATCAGGCTCGTCTCTCGGCCTTGATGCTGTATAGATTGTTACAGAAGGCCTACACATATATAATGACTTCTATCATGGAAGAAGAAGCCGAGAAGCAAAATCAGCTAAGGGTCAGTGAATTAAAATGTGAAGAGCCTGATAAGCAGGGTGCTAGAGAACCTGAGCAGTGTCTTCAAGTTAGAAGTGAACCTCATATTGATGTAAAAGTTGATTTCAAGAAATCAGATTGCTGTATAGAGAGTGAAGCAAGTAACATGAGGGCCAAATCTTCGGGTTCCAACAAAAACGTTGTTAATGGTGAGCTTCAACAGATTTTATTGGCAACAAGTTCGGTGACTGATCGGACATTGATGAATACTACTTCTGGGGTAGCTGGGGTAGCTGCTGTTCCCAGGATCAATGATACTTCTGAGTTTAGCATATACACTTCTGTTAAGGAGGATTCAAGCCCGCAGGAGTTGGCAGATACTTCTGTATTTCAAGCAGTCTCGTGTAGAGATTTAGTGGCTGTCGGGACAATGTTATCACATGGATTCCCTTCGGAAAGTTGGATGAATGCACATCAAGGACATGCCATAAGGCCCCTTCCAGTCACTTATGAAGCACTTAGTTGTTAA___GCTAATGCGGTAAATCAATATCATATACTATATGGTTGGTTCCGATCCACTTAGAAGTTCTTCAGATGATATGCAGACCAGTGACTAAAGGGGATGCCAAAGACCTAGGAATGTAATTGAAAAACCTTTATCCTGCACAGCAGTTTTTTCAACAGCAATAAACATCTGGCTTTTCGTTTTGGGGAGACAACAGCCTTCACCTGATCCGTAAGCAGCAGACATGGACCAGCAATCAAGGACCAATGGTGGTGATTGTGATCAAATCAGAAAAAATTGCTCCACCAAAGATATTTTGTAGCAGGAAAACCACCTTGAGCACAGCAGGTTGGTTGGAAGTGTTGAGGACATTTGGTGGTTTCAATGGACAATGTCTCTGAGATTTTGTAGCACTGGCTTATAAAGATCAAACTTGTCATTTGACTGTTTGTAGTGGTCAATCTTCTCAGTTGACTGGATGGATTCTCCCATTTCTATAACATTCCAAAGCAATGTCATAGATATTGCATCTTTTGGTGGAAGACTGTGCTTTTTCTTTGTAAATACAATCTTTAATGTCAAAACTGGAACAAATGTTATGCTTTTCTGTGAGTAGATCACGTGTGCTTTTGGTAATATGCAGTGTACTTTTTGTTATAATGTATCCATTTGCTGCCCATTTTATAAAACATTGGTACAGCTGTACTACAAT

Fln Alignment:

Contig1690___KKHWWLTNKKLAEKHLSNARALLGSQEPTEIYSXXXXXXXXXXXCPRWEKALELKARAFLYxxxxxDVANMLQEYIPSLRFREIVPSESPPVSKEMS-----RDQVRLLPNYEESSRLRANVFLKCFSVYQLKKKLLAGLSRRCERE-EWRYLVLGQACCHLGMMEDALVLLQSGKRVASAAFRRESTSRNDDSFC------------------SENSASESEIVSHLLGNIXXXXXXXXXXXXXXDAGLYSESVRHFTKILDGRRGTPQGFISECYMLRATAYQAAGRVTDSIADCNRTLALDPVCIEALTTRAALFETARCFSESLQDLEHLRLLYESTLRQQKFPGPVWKPQKLNFRDIHGNLQFLKSKILNMKQRLSSPFT--IDYYTLIGLRRGCTRADVERAHLLLCLRHRPDKASHFVDRCEFVDERDIDAVKDQARLSALMLYRLLQKAYTYIMTSIMEEE-AEKQNQLRVSELKCEEPDKQGAREPEQCLQVRSEPHIDVKVDFKKSDCCIESEASNMRAKSSGSNKNVVNGELQQILLATSSVTDRTLMNTTSGVAGVAAVPRINDTSEFSIYTSVKEDSSPQELADTSVFQAVSCRDLVAVGTMLSHGFPSESWMNAHQGHAIRPLPVTYEALSC
G7KSS0______________KKHWWLTNRKIVEKYIKDARSLIATQEQSEILSALNLLDAALAISPRLDQALELRARSLLYxxxxxDVADMLQDYIPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLLSS---DSPVRDQSF-KCFSVSDLKKKVMAGLCKSCEKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRIASAAFRRESVCWSDDSFPLLTIPLAGDTPNQQPTTPPRAPLNETESVTHLLSHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRAAPQGFLAECYMHRASAHRSAGRIAESIADCNRTLSLDPTCIQALETRASLFEAIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRLSSGETTSVDYYALIGVRRGCSRSELERAHLLLCLRHKPDKATNFIERCEFADERDIDTVKEKAKMCSLLLYRLVQKGYTSVMSNVLDEEAAEKQRKKNVA----AAAQAQAAA---------------IQVQVKKTN---EAELKNNKAENKSSNVFVEN---DQPLISSCTV-------------------------------------------NPAVFQGVFCRDLAVVGSLLT------------QARFNRTMPVKYEALSC

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1421	20	80			0.995493
1422	80			20	0.995493
1423		80	20		0.995493
1530		14		85	0.993533
1606			14	85	0.993533
1608			14	85	0.993533
1643		42		57	1.0
1733	16		83		0.994512
1854	33			66	1.0
1989	66			33	1.0
2027			75	25	0.996473
2102	80		20		0.995493
2177	25			75	0.996473
2178	75	25			0.996473
2179	25		75		0.996473
2206	80		20		0.995493
2207			20	80	0.995493
2208		80	20		0.995493
2346	70		30		1.0
2347	70		30		1.0
2348	70	20	10		0.999998
2349		80		20	0.999996
2350	80		20		0.999996
2353	20			80	0.999996
2354		20	80		0.999996
2355			80	20	0.999996
2412		77	22		0.999999
2466		37		62	1.0
2469		75		25	1.0
2474	75		25		1.0
2682	77			22	0.999999
2761	75			25	0.996473
2805	33			66	0.997452
2806			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain