SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1657

Length: 1841 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1657

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] ref\|NP_001078437.1\| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] gb\|AEE84821.1\| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	AT4G23895; At4g23895; GSVIVT00006750001; OSJNBb0086G17.4; Os05g0595500; OsI_21240; OsJ_19781; PHYPADRAFT_158980; PHYPADRAFT_47272; POPTRDRAFT_646756; POPTRDRAFT_847596; RCOM_1692100;

Source	InterPros	Term	Type	Identity
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23895.1	Pleckstrin homology (PH) domain-containing protein chr4:12422883-12424146 FORWARD LENGTH=247	53%
RefSeq	Arabidopsis thaliana	NP_001078437.1	Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002299473.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA32

Fln msg:

Fln protein: MDDGHSSANKRPTSSHSEVNATDPLQSGYLSLPIDNESQNSDTDNERADVHNSDTYQTCKVGSWSTEQVRNWFQQNVPFERNRMEEYLQIFQNENVDGPSLTTLKRSHRACFGMTDFEWLLFKEARKRLLDGYERTEGISEPFGTSPTITDIENILLTSSRLSCSSRSQAALWAKNNKSTSLWNLFSIPKIPWGSDIAKDDQIKILAAEVESLRGEIASADERETTLHAQLGHLDELLRSTQLAGYLYTRTRWIALPGEPPIDDTDVDDWVQRFVVLQGSCVFSYLRSTDISPQDSILLEEIVEAGPMSTHAQEAGDECWFSFHMTSCHGLRFECSSPYKFQVDAWLTAIKS*

Protein Length: 354

Fln nts: CTTAACGTGTGACTCAGATTGGAATGGTTTTGGCAATTGCCTGAATCCACTTCCACTTTTCACACATTATCGAAACGCATCCATGGCATGTGCCATCCAATGAAATCGGATAATCTTCCCCGGCACGGTTCTCGGAGAATCTGTCTATCAGGAAGCAACACGTTCTGCCCTGCAAACCCTCGAGGCAGAAGTGCATTATAGATTGATTTGGGCCAAATTTATTCGGGCAATGGTGTGTCTCTATCTTAATAAAATCGAGGAGGATAAAGGTGTTGTACGGGTGTAATAAATCTATATCCA_-_ATGGATGATGGTCACAGTTCGGCCAACAAGCGGCCAACAAGCTCACACAGTGAGGTCAACGCAACAGATCCTTTACAAAGTGGATATTTAAGTTTGCCAATTGATAATGAATCACAGAATTCTGACACTGATAATGAAAGGGCTGATGTACACAATTCAGATACATATCAGACATGTAAAGTTGGATCTTGGTCTACTGAACAAGTCAGGAATTGGTTTCAGCAAAATGTTCCTTTTGAAAGGAATCGCATGGAAGAATATTTGCAAATATTCCAAAACGAAAATGTGGATGGTCCGTCCCTTACTACATTAAAAAGAAGCCATCGTGCTTGCTTTGGAATGACCGACTTTGAATGGCTTCTGTTTAAGGAGGCAAGAAAGAGACTATTGGATGGCTATGAAAGAACTGAGGGAATTTCAGAACCCTTTGGGACTTCACCCACAATCACTGACATTGAAAACATCCTGTTGACATCATCAAGGCTATCATGCTCTTCAAGGTCTCAGGCTGCACTGTGGGCAAAAAATAATAAATCGACATCTCTTTGGAATTTGTTTAGCATTCCCAAAATTCCTTGGGGATCAGATATTGCCAAAGATGATCAGATTAAAATACTTGCAGCAGAAGTGGAATCTCTCCGAGGAGAAATTGCTAGTGCTGATGAGCGAGAAACAACTCTTCATGCCCAGTTGGGACATCTTGATGAACTTTTGAGATCCACTCAACTTGCAGGTTACTTGTACACTCGAACAAGATGGATAGCTCTGCCAGGAGAACCTCCAATAGATGATACAGATGTTGACGACTGGGTACAAAGATTTGTTGTTCTTCAAGGATCGTGTGTTTTTTCCTATCTCCGTTCAACAGATATAAGCCCACAGGATTCAATTCTTTTGGAAGAAATTGTTGAGGCTGGACCTATGTCGACTCATGCACAAGAAGCTGGTGATGAATGTTGGTTTTCCTTTCACATGACATCTTGTCATGGCCTTCGTTTTGAATGTTCTAGCCCCTACAAGTTTCAGGTTGATGCTTGGTTGACAGCTATCAAGAGCTGA___CTACAAAGCTTCTTCTCTGCACAAATCATCAAACCTGTAGGGGTTTGGCTGTGCAAAATTCCATGTTCTATATTGTATAATATGATGTAAAATTGTAAATTAAAAACGTAGAATATAAAAAACTCATCAAGCTGGCAGGTGTATGGAGTCTTCTTTTGATCATAGATGCTCAGAAAACTGTATTTGAGTGCTTCTTTATTGGTGGAGTCTGATAGAGAATGTAACTGAAAAACTTTCTCGGAAAACCACGTTGCTGTTGATTGTTCATATTGTATTCAACAAGATCATTTGAAGGAGTATATGGTACCTGCAGGATAAACGAAAGATGGCAGCCTTTCATGTAAAATTATTGAATGTCATCAAATAATGAAAGTATATGAATCAATAGCTTCATCCTGGAAGTGATTTCAGGCATTACATTTATTACAATTTAAGTAATGATTATTCTTTTGGCTGTTTATGGAAAATATCATTTTGATAAT

Fln Alignment:

Contig1657___MDDGHSSANKRPTSSHSEVNATDPLQSGYLSLPIDNESQNSDTDNERADVHNSDTYQTCKVGSWSTEQVRNWFQQNVPFERNRMEEYLQIFQNENVDGPSLTTLKRSHRACFGMTDFEWLLFKEARKRLLDGYERTEGISEPFGTSPTITDIENIXXXXXXXXXXXXXQAALWAKNNKSTSLWNLFSIPKIPWGSDIAKDDQIKILAAEVESLRGEIASADERETTLHAQLGHLDELLRSTQLAGYLYTRTRWIALPGEPPIDDTDVDDWVQRFVVLQGSCVFSYLRSTDISPQDSILLEEIVEAGPMSTHAQEAGDECWFSFHMTSCHGLRFECSSPYKFQVDAWLTAI
D5AA32______________MDDSHSSAYKRPTSTHSKVNAEDPLQSGYLSLPIDNESHNSDTDNERTDVHNSDTDQTSIVGSWSTEQVRNWFQQNVPFERNRMEEYLQIFQNENVDGPSFTTLKRSHCACFGMTDFEWLLFKEARKRLFDGNERTEGISEHFGTSPTITDIENILLTSSGLSCSPRSHAGLWARNNKPTSLWNLFSIPKIPWGSDIAKDDQIKILAAEVESLRGEIASADERETNLHAQLGHLDELLRSTQLAGYLYTRTRWIALPGEPPIDDTDVDDWVQRFVVLQGSCIFFYLRSTDISPQDSILLEEIVEAGPMPTHTQEAGDQCWFSFHMTSCHGLRFECSSPYKFQVDSWLTAI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
924	87		12		0.992554
941	62		37		1.0
1068			33	66	0.997452
1152		66		33	0.997452
1287	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain