SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1654

Length: 1729 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1654 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acetylornithine deacetylase, putative n=1 Tax=Ricinus communis RepID=B9S1F8_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M20	IPR002933	-	0.0	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17830.2	-	73%
RefSeq	Arabidopsis thaliana	NP_193517.3	acetylornithine deacetylase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002326718.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUW9

Fln msg:

Fln protein: MAAIGEMDTESFVSLLRKIIGESKYVQNNPPDLVPEEDRVGRHVLEALQPYGVENGGPLIIQHVSYLKGRGNIIVEYPGTVDGKIVSFVGCHMDVVTANPEEWDFDPFSLSVEGDKLCGRGTTDCLGHVALITELMQRLGEVKPKLKSSVVAVFIANEENSSVLDIGVDGLVKQGLLNKLKDGPLYWIDTADKQPCIGTGGVITWKLHATGKLFHSGLPHKAINALELCMEALEEIQKRFYNDFPAHPKEELYQFATPSTMKPTQWSYPGGGLNQIPGECTISGDVRLTPFYSCADVVKKLKGYVDDINANIEKLKTRGPVSKYVLPEENLRGRLSIEFDEMMTSGVACNLDSPGFHVLCKATKDVVGYVKPYSITGSLPLIRELQDEGFDVQTTGYGIMATYHAKNEYCLLSDFQQGFRVFASIIAQLEG*

Protein Length: 433

Fln nts: ATGGGATCACTGTTGCTAATCGAACGATATCATTAGAGAATTTTCATCAGAGAACTAAACTCAAGTTCAATTTTAGGCTTGAAACA_-_ATGGCAGCCATCGGAGAAATGGACACCGAATCCTTCGTTTCTCTGCTCCGAAAGATCATCGGAGAGAGCAAATATGTTCAAAATAATCCGCCCGATCTTGTTCCAGAGGAAGACAGAGTAGGCAGACATGTATTGGAAGCTCTCCAGCCTTACGGCGTCGAAAATGGCGGTCCTTTGATCATTCAGCATGTAAGCTATCTGAAGGGACGAGGGAACATAATTGTCGAGTATCCCGGTACAGTGGACGGGAAAATCGTTTCCTTTGTTGGCTGCCACATGGATGTCGTCACTGCTAATCCCGAGGAATGGGACTTTGATCCTTTCTCCTTGAGCGTTGAAGGTGATAAATTGTGTGGGCGGGGCACAACTGATTGTTTGGGTCATGTAGCCCTCATTACAGAGCTCATGCAGCGACTGGGAGAAGTTAAACCAAAGTTGAAGTCTAGTGTGGTGGCTGTTTTCATTGCCAACGAAGAAAATTCATCAGTACTAGATATTGGTGTGGATGGTCTTGTAAAACAAGGCTTGCTCAACAAGCTCAAGGATGGACCATTGTACTGGATAGATACAGCAGACAAACAACCTTGCATAGGCACAGGGGGAGTGATTACATGGAAACTTCATGCAACAGGAAAACTTTTTCACAGCGGTCTTCCACACAAGGCAATCAATGCATTGGAATTGTGCATGGAGGCACTTGAGGAGATCCAAAAGCGGTTTTACAATGATTTTCCTGCACATCCCAAGGAAGAACTCTATCAATTTGCCACACCCTCAACAATGAAACCAACACAGTGGAGTTACCCTGGAGGTGGTCTCAATCAGATTCCAGGAGAATGCACCATATCAGGAGATGTCAGGCTAACGCCATTTTACAGTTGTGCTGATGTTGTAAAGAAATTAAAGGGGTATGTGGATGACATAAATGCAAATATCGAGAAGTTGAAAACTAGAGGTCCAGTTTCCAAATATGTACTTCCTGAAGAAAACCTCAGGGGCAGACTTTCAATTGAGTTTGATGAGATGATGACATCAGGAGTTGCATGCAATCTTGACTCACCTGGATTTCATGTTTTATGCAAGGCCACTAAAGATGTCGTCGGATATGTGAAACCATACTCTATTACAGGCTCTCTACCTCTAATCCGTGAATTGCAGGATGAAGGTTTTGATGTGCAAACAACAGGCTATGGGATCATGGCTACATACCATGCAAAAAACGAGTATTGTCTGTTGTCTGATTTTCAACAAGGATTCAGGGTTTTTGCAAGCATCATTGCACAACTTGAAGGATGA___AGATGTAACATTATGTACTCTATTATCTGTTATTTAATAAAACATTAGGTAGCATGGTGCTCAAATCTTATATGTTTCTGGCCTCACCATAACGGGAGATATCATTGCCTTGAATACAAGGACATAGTTTTACACATGCTGAATTGTGTAAAGAAACTCCACAATCTAATTTAAAATATTCTTTGGCCACATTACGTGCCTTTCAAAGAGGTTTCCTTTAATACGCAACATTATTTTGTTTTGTAAATATAGTACAAACAAGCTCTAGACAGAGATTTGAAGTTCAATAAGCAAGTGCATGGATTGAGTTTATAGTCCTGTTATTACCAAGGTACAAGTTTTGCGTC

Fln Alignment:

Contig1654___MAAIGEMDTESFVSLLRKIIGESKYVQNNPPDLVPEEDRVGRHVLEALQPYGVENGGPLIIQHVSYLKGRGNIIVEYPGTVDGKIVSFVGCHMDVVTANPEEWDFDPFSLSVEGDKLCGRGTTDCLGHVALITELMQRLGEVKPKLKSSVVAVFIANEENSSVLDIGVDGLVKQGLLNKLKDGPLYWIDTADKQPCIGTGGVITWKLHATGKLFHSGLPHKAINALELCMEALEEIQKRFYNDFPAHPKEELYQFATPSTMKPTQWSYPGGGLNQIPGECTISGDVRLTPFYSCADVVKKLKGYVDDINANIEKLKTRGPVSKYVLPEENLRGRLSIEFDEMMTSGVACNLDSPGFHVLCKATKDVVGYVKPYSITGSLPLIRELQDEGFDVQTTGYGIMATYHAKNEYCLLSDFQQGFRVFASIIAQLEG
A9NUW9______________MAAIGEMDTEAFVSLLRKLIGESKYVQNNPPDLVPEEDRVGRHVLEALEPYGVEKGGPLIIQHVSYLKGRGNIIVEYPGTVEGKILSFVGCHMDVVTANPEEWDFDPFSLSIEGDKLCGRGTTDCLGHVALISELMRRLGELKPKLKSSVVAVFIANEENSSVLDVGVDALVKQGLLNKLRDGPLFWIDTADKQPCIGTGGVITWKLHATGKLFHSGLPHKAINALELCMEALEEIQKRFYNDFPAHPKEELYQFATPSTMKPTQWSYPGGGLNQIPGECTISGDVRLTPFYSCADVVKKLKEYVDNINANIEKLKTRGPVSKYVLPEENLRGRLSIEFDEMMTSGVACNLDSPGFHVLCKATKDVVGYVKPYSITGSLPLIRELQDEGFDVQTTGYGIMATYHAKNEYCLLSDFQQGFKVFASIIAQLEG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1191		90		10	0.90298
1596	4		65	30	1.0
1620		19		80	1.0
1676	23	7	69		1.0
1707		12		87	0.992554
1708		14		85	0.993533
1710		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain