SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1594

Length: 1585 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1594

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc transporter, putative n=1 Tax=Asparagus officinalis RepID=Q2XNV5_ASPOF	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Putative zinc transporter	-	-	8.968e-17	-

Source	Gene names
Sma3	12.t00028; 12.t00049; At1g55910; At5g59520; F14J16.16; GSVIVT00024285001; GSVIVT00033348001; GSVIVT00033350001; GSVIVT00033352001; GSVIVT00033353001; LOC_Os03g29850; MtrDRAFT_AC157503g1v2; Os01g0972200; Os03g0411800; Os03g29850; OsI_05391; OsI_05394; OsI_

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transposase activity	GO:0004803	Molecular Function	-
Sma3	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	transposition, DNA-mediated	GO:0006313	Biological Process	-
Sma3	zinc ion transport	GO:0006829	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Transposase, IS4-like	IPR002559	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55910.1	ZIP11 zinc transporter 11 precursor chr1:20906161-20907225 FORWARD LENGTH=326	56%
RefSeq	Arabidopsis thaliana	NP_564703.1	zinc transporter 11 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002300374.1	ZIP transporter [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZA5

Fln msg: your sequence is shorter than subject: 336 - 358

Fln protein: MAALRPFSKSKRIFLAVLLVMSCLFPSHTLAHGDDADHGDQKPNLRAKGLIIVKIWCLVIVFLGTFAGGISPYFCKWNESLLILGTQFAGGVFMGTALMHFLSDSNETFEKLTDKEYPFAFMLSTAGYLMTMSADCLIMWVNQTRKTSGDVEKVGNPKEEGAPSVSRYRLAESLLLISALCFHSVFEGIAIGVAESEGDAWRALWTVCLHKIFAAIAMGIALLRMMPQRPFLSCVAYAFAFGISSPIGVAIGIVIDATTEGPVADWIYAISMGIATGVFVYVAINHLLRPASCTNINRNPDPSSSPNTPSPASFYNLLAVVLGAGVIAVVMIWDT*

Protein Length: 337

Fln nts: GATGGAAGGTAGGTAGTACAAGCCTGCCTTCATATTCATGGATAGGGGCACACATACTCTTTATCTCTGTCACCAGTTTTGGAGTTAGGCACACATACTCTTTATCTCTATCACCAGTTTTGGAGTTATTGGCACTGCC_-_ATGGCTGCTCTCAGGCCTTTCTCTAAGTCCAAAAGGATTTTCCTTGCGGTGTTGCTAGTGATGAGCTGCTTATTTCCTTCTCACACACTGGCTCATGGCGATGATGCTGATCATGGTGATCAGAAGCCCAACTTGAGAGCCAAAGGTTTGATTATTGTGAAAATTTGGTGTCTGGTAATTGTCTTTTTGGGGACTTTTGCAGGGGGAATTTCTCCCTATTTCTGCAAATGGAATGAGAGTCTTCTGATATTGGGGACTCAGTTTGCAGGAGGGGTGTTCATGGGCACTGCTCTCATGCATTTCCTGAGCGATTCCAACGAGACATTCGAGAAATTGACTGACAAGGAGTACCCATTTGCATTCATGCTGTCCACCGCCGGATACCTTATGACAATGTCAGCAGACTGCCTGATCATGTGGGTTAATCAGACTCGGAAAACCAGCGGGGATGTGGAGAAAGTCGGGAATCCGAAAGAGGAAGGAGCACCGTCTGTATCTAGGTACCGTCTGGCAGAGAGCTTGTTGTTGATATCGGCGCTCTGCTTCCACTCGGTGTTCGAGGGCATAGCGATCGGCGTTGCAGAGAGCGAGGGCGACGCGTGGAGAGCCCTGTGGACGGTGTGCCTGCACAAGATTTTCGCTGCGATTGCCATGGGAATAGCTCTGCTAAGGATGATGCCGCAGCGCCCTTTCCTTTCTTGCGTGGCCTACGCTTTTGCGTTCGGGATCTCGAGCCCAATTGGGGTTGCTATCGGGATTGTCATAGACGCCACCACGGAGGGGCCCGTTGCCGACTGGATATACGCCATCTCCATGGGTATCGCCACCGGTGTATTCGTCTATGTGGCCATCAACCACCTGCTCAGACCTGCAAGCTGCACAAATATCAATCGTAACCCTGACCCTAGCTCTAGCCCTAACACCCCTTCCCCTGCCTCCTTTTACAACTTGCTGGCTGTGGTGTTGGGAGCGGGAGTGATTGCCGTGGTCATGATTTGGGATACCTAG___CCCTCCCAATCCCACTGCCATTTCAATTCATATCCAGGACCCCAGGCCCTTTTGGACTAAGGACATTACAGGCCTTCCTCCTTCACTATATTATTCTTCCATGAACGAATTGAGCCAAGGTTTGGGATTTCCACCCAACTTGTAATCAGGGTTTTCAAATCCGGGATTTGTGCAGCTAGAGTCAGTGGGTCCAAATCGATCTCGGCCTTTAAAGCCCTTCCATGGTTGATTGATGGACAGTTCTTGGTATTGCAAAGCCAGAGTCAACTTATAATACATTCGGTGATGTTTGTACTGCTTTACTTGTAAAGACCTCAGTGCAAATTACAGTGGTAAATCGAAGTTAGTTGCTGTATTCATGGAATAAAATTTGCGATATCCATAGTCGCACTCTTGTTTTGTCCAGGGTTATAAGTGGTCATTGAATAAAATTAATGT

Fln Alignment:

Contig1594___SKRIFLAVLLVMSCLFPSHTLAHG--DDADHGDQKPNLRAKGLIIVKIWCLVIVFLGTFAGGISPYFCKWNESLLILGTQFAGGVFMGTALMHFLSDSNETFEKLTDKEYPFAFMLSTAGYLMTMSADCLIMWVNQ------------TRKTSGDVEKVGNPKEEGAPS------------------------VSRYRLAESLLLISALCFHSVFEGIAIGVAESEGDAWRALWTVCLHKIFAAIAMGIALLRMMPQRPFLSCVAYAFAFGISSPIGVAIGIVIDATTEGPVADWIYAISMGIATGVFVYVAINHLL
A9NZA5______________ARTITSPVIVIINCSLIPLVIAHGGSDSGSSSDGPLNLRAKGLILVKIWCLIIVFVGTFAGGISPYFYRWNESFLLLGTQFAAGVFLGTAWMHFLSDSAETFADLTDKTYPFAFMLCTAGYLVTMLGDLIVAWVYQKQDGPNIAAIPLQRKADIRSTESGAPTQTGEASLNCQTLQTPPHSNGESSMVKAASLVKKTSMGDSLLLILALCFHSVFEGIAIGVAATKADAWRALWTVCLHKIFAAIAMGIALLRIIPNRPFLSCAAYAFAFAISSPVGVAIGILIDATTQGHVADWIYAISMGFACGVFVYVAINHLL

SNPs (tot: 4)

Position	A %	C %	T %	Probability
803		50	50	1.0
828		85	14	0.993533
1304	75	25		0.996473
1534		50	50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain