SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1587

Length: 327 nt

UniGene Fasta

>sp_v3.0_unigene1587
TGCAGGCCCGTCCTGCAGCAAAAACCAAAAACACCTCTTAAATGGATGATACTTTCCCCGAACTCTTACAATTTAAATACATATTTGCATAGAAGAGGAAGGAAAAGAGCAATTTATATACCTGTCAAAGCTGCTGGTTCTGCTGTTTCCCTTGAAAAGCGTGAAGTTGCAGGCAACGACCCAGAACGACGGCTTATAGAAGGCCTGCTCGGCATTCAGGGCAGGGGACGCTCTGCTTCTCCCCAGCAATTGAAGGAGGTTGAGCAAGCAATAACAGAACTTGAATCAGCGGGTGGTGTCTCGGACCCTACCAGTTCCTCTCTAATC

Ace file of the UniGene sp_v3.0_unigene1587

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative plastid-lipid-associated protein 12 [Arabidopsis thaliana] sp\|Q8LAP6.1\|PAP12_ARATH RecName: Full=Probable plastid-lipid-associated protein 12, chloroplastic; AltName: Full=Fibrillin-12; Flags: Precursor gb\|AAM65225.1\| unknown [Arabidopsis thalian	-	-	5.0e-12	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	Gene names
Sma3	GSVIVT00024719001;

Source	GOs	Term	Type	e value	Identity
Sma3	structural molecule activity	GO:0005198	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002297657.1	predicted protein [Populus trichocarpa]	8.0e-14	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTA6

Fln msg: Distance to subject end: 289 aas, your sequence is shorter than subject: 109 - 418

Fln protein: CRPVLQQKPKTPLKWMILSPNSYNLNTYLHRRGRKRAIYIPVKAAGSAVSLEKREVAGNDPERRLIEGLLGIQGRGRSASPQQLKEVEQAITELESAGGVSDPTSSSLI

Protein Length: 110

Fln nts: TGCAGGCCCGTCCTGCAGCAAAAACCAAAAACACCTCTTAAATGGATGATACTTTCCCCGAACTCTTACAATTTAAATACATATTTGCATAGAAGAGGAAGGAAAAGAGCAATTTATATACCTGTCAAAGCTGCTGGTTCTGCTGTTTCCCTTGAAAAGCGTGAAGTTGCAGGCAACGACCCAGAACGACGGCTTATAGAAGGCCTGCTCGGCATTCAGGGCAGGGGACGCTCTGCTTCTCCCCAGCAATTGAAGGAGGTTGAGCAAGCAATAACAGAACTTGAATCAGCGGGTGGTGTCTCGGACCCTACCAGTTCCTCTCTAATC

Fln Alignment:

Contig1587___CRPVLQQKPKTPLKWMILSPNSYNLNTYLHRRGRKRAIYIPVKAAGSAVSLEKREVAGNDPERRLIEGLLGIQGRGRSASPQQLKEVEQAITELESAGGVSDPTSSSLI
A9NTA6______________CRPVLEQKSKTPLKWRIPSLNSDNSNTYSHKSGRKRAVPIPVIAAGAAVSLEKCDVAGNDAERRLIEGLLGIQGRGRSTSPQQLKEVEQAITALESAGGVSDPTSSSLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain