SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1584

Length: 2086 nt

UniGene Fasta

>sp_v3.0_unigene1584
GAAAGTTGTGAAAACGAAGCAAGCTTCGGCATTGTGAATAGCAGGAGAGGCACAGGGGAAGTATCAGGCTACATCATTTGAATTGCGAGTGGATCTGTAATAAATGGGTGCTCAGCTATCTAAGGATGAGCTCCTATATACAGAAGTCATGAATGGGAACCAGGAGAAGGTCAAAGCTCTCCGTCGTGCTGGGGCAAGCTTGGAGTGGATGGATAAGGAAGGAAGAACCCCTCTTATTCTTGCTTGTACAAGAGGCGATTTACTGGAAATGGCCATAACATTAATCAGTTTGGGTGCCAATATACATTCATACAAACCTGGGGCTCATGGAGGAACTCCTTTACATCATGCTGCCAAACGTGGCCTTGACAAAACTGTGAAAATGCTTCTTTCTCATGGAGCGAATCCTTTGACAATCAATGATGATTGCCAGACACCTCTTGACATGGCAAGAAGTAAGGACCAAGTCACCGTGGTTCGGATAATTGAGGGATGGATTTCTCTCTTTTCTGGTATGATTCGGGAACTTTCTGGACCTGGCTTCTTGGAAGCATTAGCACCTCAGTGGCTATCAAAAAAAATCTGGGCCGTGGTGTTACCTTCCATATCACACAATCCAAGGAGGCCTCCAAAATTTGAGCTTGCCATTTATCCAACACCAAAGGTTTCTCGACCACGGACAATTATTTCACTATCGAAAGTTGAAATTGAAGAACCCAAGTTTGATTTGCCAGATCCTGTACTGGTACTATTTGACAAGGGTGCAAAGAGTAGATATAAGTTTCTGTCTGAGTTTGAAGGTGACAAACCACAATTGCGTAGATTATATGAAGCCTGCAAAGGGATCCGGATGGCTCAGAATGAAGTGAATGCTCCAGTTGTTTGGGGAGTACCTCCTTTGCAGCCAAACCTACCTGCAACACCACCTGCAAACATGCCTCTCCCGGAGGATGTAGAACTCGCTATGGCAATTGCTGCTTCAATGCAATTTGCATCACAAGAAGGAATTCCTCCTGTATCTGAACAGGCTTCAACAAGTGACTTAAATGGCAGGCCAAATATATCAGGTGGGGTACCTCCTGATAGAACAACGGTGCCATCGATTAATGATAAAACCGGTGGCTGGTCAGGTAAGGTTGGTTCAACTTCTTGCAATGGCTGGGCTGCAGCAGATGAAGCAAAACCGAGCAGCAGCAGCACTGCTGAAACTCTGACAAATGATCCCACAGTTTCTAGCCCATCAGTTTCTGCAAATTCTGTTGCTGTGTCAGCAGCTGCTTGTTCTCCTTCAGCTCCCCCTCTGCCGGCAGAAGAAGTCCTTGGTCCAATTATTTATCCTTCCATTGATTTGTCTCAAATCGAACATGATCTTCCTTCTACTTCAGAGCATGGTACACAGTCCTTAGCAAGTTCAACCAAAGCAGGGGGTGATACTTCTGGCACCTGTGTAATTTGTTGGGATGCTCCACCGGAAGGAGTTTGTATACCTTGTGGCCATCTTGCAGGTTGTATGTCCTGCTTAAATGAGATCAAGGTGAAGAATTGGGGTTGCCCAGTTTGTCGGGCTAGCATTGAACATGTCATCAGAGTATATACTGTATGATTGAGAATCCAAAACTTTGAGATAAAACAAATAAACAAATAACTCAGTAATTATATTTTGAATGGTGCAGGATCTAATGCCAAAAAAAAATGCAGGAATCTCGGATGATATAACCTTCCGTTAGTCTGAATGTATTGTGTACATATTGGTGAATGTTATTTGTTCCTTATTTGATCAAGATGGTCAGAGTACTGCTCTGAGTTCTGAATGTAGTTGGTGACATTACATTATATTTACAGAGTTTTGTATCTTCATCAATTAGAGAGAACCCTACACTGGTCCAGTAACTATTCTCCTTGCCATGAAATAATAGTCATATTTCCTTGCTCAATATATTAACTTTTCCATTTGTATGCATGAGCTAGATCTCATGCAGTTGCTGTAATGATGGCTGAGAATGTACTCTTTTTGAAGGGATTGCATCCTTTTCAGTAACATGAATATCAGATTGTTTTGAGGTAATATTCTGTTAGTGGTTGTCAA

Ace file of the UniGene sp_v3.0_unigene1584

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0666 FOG: Ankyrin repeat	-	-	3.0e-07	31%
FL-Next	sp=Probable E3 ubiquitin-protein ligase XBOS34; Oryza sativa subsp. japonica (Rice).	-	-	0.0	45%
Sma3	Auxin-regulated protein-like protein	-	-	3.527e-08	-

Source	Gene names
Sma3	AT4g14360/dl3220c; At3g23280; At4g14365; GSVIVT00018577001; GSVIVT00020279001; Os07g0446100; OsI_25836; OsJ_24077; P0030H06.109-1; PHYPADRAFT_142779; PHYPADRAFT_182911; PHYPADRAFT_189440; POPTRDRAFT_281218; POPTRDRAFT_559705; POPTRDRAFT_580193; POPTRDRAFT

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Recombination protein RecR, conserved site	IPR015967	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q7XI08

Fln msg:

Fln protein: MGAQLSKDELLYTEVMNGNQEKVKALRRAGASLEWMDKEGRTPLILACTRGDLLEMAITLISLGANIHSYKPGAHGGTPLHHAAKRGLDKTVKMLLSHGANPLTINDDCQTPLDMARSKDQVTVVRIIEGWISLFSGMIRELSGPGFLEALAPQWLSKKIWAVVLPSISHNPRRPPKFELAIYPTPKVSRPRTIISLSKVEIEEPKFDLPDPVLVLFDKGAKSRYKFLSEFEGDKPQLRRLYEACKGIRMAQNEVNAPVVWGVPPLQPNLPATPPANMPLPEDVELAMAIAASMQFASQEGIPPVSEQASTSDLNGRPNISGGVPPDRTTVPSINDKTGGWSGKVGSTSCNGWAAADEAKPSSSSTAETLTNDPTVSSPSVSANSVAVSAAACSPSAPPLPAEEVLGPIIYPSIDLSQIEHDLPSTSEHGTQSLASSTKAGGDTSGTCVICWDAPPEGVCIPCGHLAGCMSCLNEIKVKNWGCPVCRASIEHVIRVYTV*

Protein Length: 501

Fln nts: GAAAGTTGTGAAAACGAAGCAAGCTTCGGCATTGTGAATAGCAGGAGAGGCACAGGGGAAGTATCAGGCTACATCATTTGAATTGCGAGTGGATCTGTAATAA_-_ATGGGTGCTCAGCTATCTAAGGATGAGCTCCTATATACAGAAGTCATGAATGGGAACCAGGAGAAGGTCAAAGCTCTCCGTCGTGCTGGGGCAAGCTTGGAGTGGATGGATAAGGAAGGAAGAACCCCTCTTATTCTTGCTTGTACAAGAGGCGATTTACTGGAAATGGCCATAACATTAATCAGTTTGGGTGCCAATATACATTCATACAAACCTGGGGCTCATGGAGGAACTCCTTTACATCATGCTGCCAAACGTGGCCTTGACAAAACTGTGAAAATGCTTCTTTCTCATGGAGCGAATCCTTTGACAATCAATGATGATTGCCAGACACCTCTTGACATGGCAAGAAGTAAGGACCAAGTCACCGTGGTTCGGATAATTGAGGGATGGATTTCTCTCTTTTCTGGTATGATTCGGGAACTTTCTGGACCTGGCTTCTTGGAAGCATTAGCACCTCAGTGGCTATCAAAAAAAATCTGGGCCGTGGTGTTACCTTCCATATCACACAATCCAAGGAGGCCTCCAAAATTTGAGCTTGCCATTTATCCAACACCAAAGGTTTCTCGACCACGGACAATTATTTCACTATCGAAAGTTGAAATTGAAGAACCCAAGTTTGATTTGCCAGATCCTGTACTGGTACTATTTGACAAGGGTGCAAAGAGTAGATATAAGTTTCTGTCTGAGTTTGAAGGTGACAAACCACAATTGCGTAGATTATATGAAGCCTGCAAAGGGATCCGGATGGCTCAGAATGAAGTGAATGCTCCAGTTGTTTGGGGAGTACCTCCTTTGCAGCCAAACCTACCTGCAACACCACCTGCAAACATGCCTCTCCCGGAGGATGTAGAACTCGCTATGGCAATTGCTGCTTCAATGCAATTTGCATCACAAGAAGGAATTCCTCCTGTATCTGAACAGGCTTCAACAAGTGACTTAAATGGCAGGCCAAATATATCAGGTGGGGTACCTCCTGATAGAACAACGGTGCCATCGATTAATGATAAAACCGGTGGCTGGTCAGGTAAGGTTGGTTCAACTTCTTGCAATGGCTGGGCTGCAGCAGATGAAGCAAAACCGAGCAGCAGCAGCACTGCTGAAACTCTGACAAATGATCCCACAGTTTCTAGCCCATCAGTTTCTGCAAATTCTGTTGCTGTGTCAGCAGCTGCTTGTTCTCCTTCAGCTCCCCCTCTGCCGGCAGAAGAAGTCCTTGGTCCAATTATTTATCCTTCCATTGATTTGTCTCAAATCGAACATGATCTTCCTTCTACTTCAGAGCATGGTACACAGTCCTTAGCAAGTTCAACCAAAGCAGGGGGTGATACTTCTGGCACCTGTGTAATTTGTTGGGATGCTCCACCGGAAGGAGTTTGTATACCTTGTGGCCATCTTGCAGGTTGTATGTCCTGCTTAAATGAGATCAAGGTGAAGAATTGGGGTTGCCCAGTTTGTCGGGCTAGCATTGAACATGTCATCAGAGTATATACTGTATGA___TTGAGAATCCAAAACTTTGAGATAAAACAAATAAACAAATAACTCAGTAATTATATTTTGAATGGTGCAGGATCTAATGCCAAAAAAAAATGCAGGAATCTCGGATGATATAACCTTCCGTTAGTCTGAATGTATTGTGTACATATTGGTGAATGTTATTTGTTCCTTATTTGATCAAGATGGTCAGAGTACTGCTCTGAGTTCTGAATGTAGTTGGTGACATTACATTATATTTACAGAGTTTTGTATCTTCATCAATTAGAGAGAACCCTACACTGGTCCAGTAACTATTCTCCTTGCCATGAAATAATAGTCATATTTCCTTGCTCAATATATTAACTTTTCCATTTGTATGCATGAGCTAGATCTCATGCAGTTGCTGTAATGATGGCTGAGAATGTACTCTTTTTGAAGGGATTGCATCCTTTTCAGTAACATGAATATCAGATTGTTTTGAGGTAATATTCTGTTAGTGGTTGTCAA

Fln Alignment:

Contig1584___MGAQLSKDELLYTEVMNGNQEKVKALRRAGASLEWMDKEGRTPLILACTRGDLLEMAITLISLGANIHSYKPGAHGGTPLHHAAKRGLDKTVKMLLSHGANPLTINDDCQTPLDMARSKDQVTVVRIIEGWISLFSGMIRELSGPGFLEALAPQWLSKKIWAVVLPSISHNPRRPPKFELAIYPTPKVSRPRTIISLSKVEIEEPKFDLPDPVLVLFDKGAKSRYKFLSEFEGDKPQLRRLYEACKGIRMAQNEVNA-PVVWGVXXXXXXXXXXXXXXMPLPEDVELAMAIAASMQFASQEGIP---PVSEQASTSDLNGRP--NISGGVPPDRTTVPSINDKTGGWSGKVGSTSC--NGWAAADEAKPSSSSTAETLTNDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXEEVLGPIIYPSIDLSQIEHDLPSTSEHGT-----------------QSLASSTKAGGDTSGTCVICWDAPPEGVCIPCGHLAGCMSCLNEIKVKNWGCPVCRASIEHVIRVYTV
Q7XI08______________MGLQQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVLIELGANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKGHVNVVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLELTIYPELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGTRTRYKLLPVCEGDKQQLQWFYSACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAMAINASILSAIAEGVPDVQPITTTTATNDWGNPPSNSLNGWGPPD-TSAPS---KTSGQVPVVTSSSSTYNGWDVPGTSSGQSSSKHNKSQNSTFVVPQEALPSLPVPTAPPLAVGTFYD------GPIQYPSIDSTPVDVTMPS-ADGGTAVSSAKPAENEGDAKPAESDANASNSGNTPPGTCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1114	75		25		0.996473
1546	90	10			0.90298
1547		10		90	0.90298
1549			90	10	0.90298
1552		10	90		0.90298
1555		10	90		0.90298
1557		90		10	0.90298
1606	10		90		0.90298
1612		14	85		0.993533
1614	85			14	0.993533
1915	14			85	0.993533
1916	85			14	0.993533
1926		16		83	0.994512
2014		11		88	0.923564
2062			12	87	0.992554
2063	14		85		0.993533
2066	14		85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1187	1199	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain