SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1544

Length: 3990 nt

UniGene Fasta

>sp_v3.0_unigene1544
CGCTATAGGGACATTTGCCGACATTTGCCTCAGTCCAGTCCAGTCCAGTAGCCTCCCGCTACACATTTTCTCCTCGTCATCTATCGCGGTTACATACACAGAGAGACAGAGGGGATAGCCAGGGCAAAGACAAACCCTTGGAAATATCGATACCATGGAGGGCAAACGGCGTTTTGGGGGTCCACCCTCTGCTTCCAACCCTCCTTCTAAGAGGTTCCAGCCCGAGGAGGAGGAGGAAGAATTGGACGAGGATGTGTTTTTGGAAGAAACCCTTTTGAGAGACGAGGAGCTCCTGCAGGACAGCGGCGTGGAGGGCCTCGCTTCTCGCCTCTCTAAGTGGAAGAGACCGCATTTGCCTTCCACCTATTCTACTTCTGCCTCTCAAAGCATAGAGTTCCAGCAGTTGGATATTGATTACATTATAGGTGAAAGTCACCGGGAGATTTTGCCTCATTCAACTGGACAAGCAGCAATTTTGCGGATATTTGGTGTGACACAAGAAGGTTATAGTGTATGCTGTCTTGTACATGGTTTTCAACCATACTTTTACATCAGTTGCCTTGATGGGATGAGTCCAGATGACATAACAAGATTCCAACAAGTCTTGGAGGGTAGGATGCGAGAAGCAAATAGAAATAGCAAGGTTACAAAGTTCATCACTAAGATTGAAATGGTTCAGAAAAGAAGTATCATGTACTATCAGGAACAGAAATTTCGAACTTTCCTTAAAATTGTTGTTGCTCTTCCTACAATGGTTGCTAGCTGTAGAGGTATTCTAGAAAGGGGCATCACAATTGATGGATTGGGTTCAAGATGCTTCACTACCTATGAAAGCAATGTTCTGTTTGCACTTCGTTTTATGATTGATTGTGATATTGTTGGTGGCAACTGGATTGAACTTCCTCCTTGGTCATACCAAAGATCTCCTAGGAATATGTCTTATTGCCAAATAGAAGTTGATGTTCTATACTCTAAATTAGTTAGTCATTCCCCAGTTGGGAAGTACTCAAGAATGGCTCCCTTTAGAATTCTTAGTTTTGATATTGAATGTGCTGGTCGAAAAGGGCATTTTCCAGAGCCCAATCATGATCCTGTTATCCAGATTGCCAATTTAGTTACATTGCAAGGAGAAGATCGCCCATTTGTACGAAATGTAATGACCTTAAAGTCATGTTCTCCAATTGTTGGTGTTGACGTAATGTCATTTGATAATGAAAGAGAGGTGTTGCTTGCATGGAGGGATTTTATTCGCGAAGTTGATCCCGATCTGATCATTGGTTATAATATATGCAAGTTCGACTTGCCATATCTCATAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCCTGGGCCGTATTAGAAATAGTCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGCAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGATTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCTGTTTCAGCACACTTTCTTGGTGAGCAGAAAGAAGATGTACATCATTCTATCATTTCTGATTTGCACAATGGGAATCCAGAGACAAGGAGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACCGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAGAATCTTCTTGTGCCAAATATTAAAGGCCAAGGCTCTGGACAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGTTTCTATGAAAAACCAATTGCAACTCTGGACTTTGCGTCCTTGTATCCTTCAATCATGATGGCATATAATCTTTGTTATTGCAGCTTGGTGAGGTCAGAGGACATTGCAAAATTTAATCTCCAGCCAGAGTGTGTAAATAAAACACCATCGGGCGAGACTTTTGTGAAGCCAACTTTACAGAAGGGTATATTACCAGAGATCCTAGAAGAGTTACTGGCCGCCAGGAAAAGAGCCAAGGCAGACCTAAAGGAGGCTAAAGATCCTTTTGAAAAGGCTGTCTTGGATGGCCGACAATTGGCTTTGAAGATCAGTGCGAATTCAGTTTATGGGTTTACTGGTGCCACTGTTGGGCAATTGCCCTGTTTGGAGATTTCGTCGAGTGTGACGAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACAATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAAATATAGAAGAGGCCATGACGCTAGGGAGGGAAGCCTCAGATTATATTAGTGGTACATTTACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGTTGTTGTGGACAAAGCCAGATGCTTATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGCCTGCTGGTGAAGAACTTGGTTACAGAGTGCCTTCACAAAATACTCATTGATCGTGACATACCTGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACTTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTATGCAGTCAAGGCAGCACATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCATATGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCTGAGGATCCAATTTACGTACTGGAGAATAACATCCCTATTGATCCACAATATTATCTGGAGAATCAACTGAGCAAGCCTCTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAACTTCTTCATGGTAGTCACACACGAGCAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGCAAAGAAGATCAGACACTTTGTTCACATTGCAAAGGAAGAGAAGCAGAATTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGGTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGCACAAGTCGTGACTGCCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAGTTTTGAGGATGCTGCCCGTGTAGCTTGTAATTTTTTTGTATTATCAAATATTTTTGTTTTCCTGAATTTTCTCTGGTGTATGTTTCTCTGATTTAATGGACCAGGAAATTTATTTGGTCCCTGAATCAGGATGAGCATGGTTTATACATTGTACAGTAATTGTCAAGTCCTTGTTATTTAATGTTAACCAGTTCGATATATCTTTTCTCCTTGCAAATGAGATGGAGAAAACGTCAAAATGGATACATACTTCCCAAGGCACACCCTATAAATGCAATGTGCATGCATATCCCAAATTTTAGGAGAGCACACACTATAAAACATAGATCTGCAGGCTTACATATGTATATCCAGACATGCATATAGTTGAATGGATGGATGGATGGATAGGTAGATAGAGATGGATACACAGATAGATTGGCAGGAGCAAATCCGAGCCAAAGAAGGACGCAAAAGGATAGGCACTACGTACAAAGAAATCATCATATTTCTCCCTCTTTCAACAATTTAGGCTAATTTGAAAACTTTACTGGTCATTGCATGATTGCACCTGTCAAATGAATAGTCCGATGATGATTTGACAATTATACCACAAC

Ace file of the UniGene sp_v3.0_unigene1544

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=D7U4B5_VITVI	-	-	0.0	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	99%

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Purine metabolism	00230	%
Sma3	Pyrimidine metabolism	00240	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	Os11g0186400; LOC_Os11g08330;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3		IPR017966	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G63960.2	" DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases chr5:25599597-25606672 FORWARD LENGTH=1112"	78%
RefSeq	Arabidopsis thaliana	NP_201201.2	DNA polymerase delta subunit 1 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002307042.1	predicted protein, partial [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEH5

Fln msg: your sequence is longer than subject: 1082 - 228

Fln protein: MEGKRRFGGPPSASNPPSKRFQPEEEEEELDEDVFLEETLLRDEELLQDSGVEGLASRLSKWKRPHLPSTYSTSASQSIEFQQLDIDYIIGESHREILPHSTGQAAILRIFGVTQEGYSVCCLVHGFQPYFYISCLDGMSPDDITRFQQVLEGRMREANRNSKVTKFITKIEMVQKRSIMYYQEQKFRTFLKIVVALPTMVASCRGILERGITIDGLGSRCFTTYESNVLFALRFMIDCDIVGGNWIELPPWSYQRSPRNMSYCQIEVDVLYSKLVSHSPVGKYSRMAPFRILSFDIECAGRKGHFPEPNHDPVIQIANLVTLQGEDRPFVRNVMTLKSCSPIVGVDVMSFDNEREVLLAWRDFIREVDPDLIIGYNICKFDLPYLIERAETLKITEFPFLGRIRNSRVRVRDTSFSSRQYGTRESKEATIEGRVQFDLFQVMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLHNGNPETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPLSFLLSRGQSIKVLSQILRKSRQKNLLVPNIKGQGSGQETFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCYCSLVRSEDIAKFNLQPECVNKTPSGETFVKPTLQKGILPEILEELLAARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKRLVEERFTIVGGYQYNAEVVYGDTDSVMIQFGVPNIEEAMTLGREASDYISGTFTKPIKLEFEKIYYPYLLISKKRYAGLLWTKPDAYDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQLSKPLLRIFEPILKNASKELLHGSHTRAVSISTPSNSGIMKFAKKQLSCIGCKTPISKEDQTLCSHCKGREAELYQKTVANVRELEMLFGKLWTQCQRCQGSLHQDVLCTSRDCPIFYRRKKAQKDLTEAEVQLERWQF*

Protein Length: 1083

Fln nts: CGCTATAGGGACATTTGCCGACATTTGCCTCAGTCCAGTCCAGTCCAGTAGCCTCCCGCTACACATTTTCTCCTCGTCATCTATCGCGGTTACATACACAGAGAGACAGAGGGGATAGCCAGGGCAAAGACAAACCCTTGGAAATATCGATACC_-_ATGGAGGGCAAACGGCGTTTTGGGGGTCCACCCTCTGCTTCCAACCCTCCTTCTAAGAGGTTCCAGCCCGAGGAGGAGGAGGAAGAATTGGACGAGGATGTGTTTTTGGAAGAAACCCTTTTGAGAGACGAGGAGCTCCTGCAGGACAGCGGCGTGGAGGGCCTCGCTTCTCGCCTCTCTAAGTGGAAGAGACCGCATTTGCCTTCCACCTATTCTACTTCTGCCTCTCAAAGCATAGAGTTCCAGCAGTTGGATATTGATTACATTATAGGTGAAAGTCACCGGGAGATTTTGCCTCATTCAACTGGACAAGCAGCAATTTTGCGGATATTTGGTGTGACACAAGAAGGTTATAGTGTATGCTGTCTTGTACATGGTTTTCAACCATACTTTTACATCAGTTGCCTTGATGGGATGAGTCCAGATGACATAACAAGATTCCAACAAGTCTTGGAGGGTAGGATGCGAGAAGCAAATAGAAATAGCAAGGTTACAAAGTTCATCACTAAGATTGAAATGGTTCAGAAAAGAAGTATCATGTACTATCAGGAACAGAAATTTCGAACTTTCCTTAAAATTGTTGTTGCTCTTCCTACAATGGTTGCTAGCTGTAGAGGTATTCTAGAAAGGGGCATCACAATTGATGGATTGGGTTCAAGATGCTTCACTACCTATGAAAGCAATGTTCTGTTTGCACTTCGTTTTATGATTGATTGTGATATTGTTGGTGGCAACTGGATTGAACTTCCTCCTTGGTCATACCAAAGATCTCCTAGGAATATGTCTTATTGCCAAATAGAAGTTGATGTTCTATACTCTAAATTAGTTAGTCATTCCCCAGTTGGGAAGTACTCAAGAATGGCTCCCTTTAGAATTCTTAGTTTTGATATTGAATGTGCTGGTCGAAAAGGGCATTTTCCAGAGCCCAATCATGATCCTGTTATCCAGATTGCCAATTTAGTTACATTGCAAGGAGAAGATCGCCCATTTGTACGAAATGTAATGACCTTAAAGTCATGTTCTCCAATTGTTGGTGTTGACGTAATGTCATTTGATAATGAAAGAGAGGTGTTGCTTGCATGGAGGGATTTTATTCGCGAAGTTGATCCCGATCTGATCATTGGTTATAATATATGCAAGTTCGACTTGCCATATCTCATAGAGAGGGCAGAGACATTGAAAATAACAGAGTTCCCTTTCCTGGGCCGTATTAGAAATAGTCGTGTTCGTGTGAGGGACACCTCTTTCTCATCAAGGCAATATGGTACACGAGAGAGCAAGGAAGCAACGATTGAAGGCAGAGTTCAGTTCGATTTATTTCAGGTGATGCAGAGAGATTACAAGCTCAGTTCGTATTCATTAAATTCTGTTTCAGCACACTTTCTTGGTGAGCAGAAAGAAGATGTACATCATTCTATCATTTCTGATTTGCACAATGGGAATCCAGAGACAAGGAGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACCGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAGAATCTTCTTGTGCCAAATATTAAAGGCCAAGGCTCTGGACAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGTTTCTATGAAAAACCAATTGCAACTCTGGACTTTGCGTCCTTGTATCCTTCAATCATGATGGCATATAATCTTTGTTATTGCAGCTTGGTGAGGTCAGAGGACATTGCAAAATTTAATCTCCAGCCAGAGTGTGTAAATAAAACACCATCGGGCGAGACTTTTGTGAAGCCAACTTTACAGAAGGGTATATTACCAGAGATCCTAGAAGAGTTACTGGCCGCCAGGAAAAGAGCCAAGGCAGACCTAAAGGAGGCTAAAGATCCTTTTGAAAAGGCTGTCTTGGATGGCCGACAATTGGCTTTGAAGATCAGTGCGAATTCAGTTTATGGGTTTACTGGTGCCACTGTTGGGCAATTGCCCTGTTTGGAGATTTCGTCGAGTGTGACGAGCTATGGCCGTCAAATGATAGAGCATACAAAGAGGCTAGTTGAAGAAAGGTTCACAATAGTTGGTGGTTACCAATACAATGCTGAGGTTGTATATGGAGATACAGATTCAGTTATGATACAGTTTGGTGTACCAAATATAGAAGAGGCCATGACGCTAGGGAGGGAAGCCTCAGATTATATTAGTGGTACATTTACAAAGCCTATTAAACTAGAATTTGAAAAAATATACTACCCATACTTGTTGATCAGCAAGAAAAGATATGCTGGGTTGTTGTGGACAAAGCCAGATGCTTATGACAAAATGGATACTAAAGGCATTGAAACAGTGCGAAGGGACAATTGCCTGCTGGTGAAGAACTTGGTTACAGAGTGCCTTCACAAAATACTCATTGATCGTGACATACCTGGTGCAGTGCAGTATGTCAAGAACACTATTTCTGACTTGTTAATGAACAGAATGGATTTGTCACTTTTGGTGATAACTAAGGGTCTGACAAAGACTGGAGATGACTATGCAGTCAAGGCAGCACATGTGGAACTAGCTGAGCGCATGCGGAAGAGGGATGCTGCAACTGCTCCAACTGTGGGTGATCGTGTTCCATATGTCATCATAAAGGCTGCAAAAGGTGCCAAGGCATATGAGAAATCTGAGGATCCAATTTACGTACTGGAGAATAACATCCCTATTGATCCACAATATTATCTGGAGAATCAACTGAGCAAGCCTCTGTTGAGAATATTTGAGCCCATTTTGAAGAATGCAAGCAAGGAACTTCTTCATGGTAGTCACACACGAGCAGTTTCCATATCAACTCCTTCAAATAGTGGAATTATGAAATTTGCCAAGAAACAACTCAGTTGTATTGGTTGTAAAACACCTATCAGCAAAGAAGATCAGACACTTTGTTCACATTGCAAAGGAAGAGAAGCAGAATTGTATCAGAAAACAGTTGCAAATGTGAGGGAATTAGAAATGCTCTTTGGTAAACTATGGACACAATGTCAGCGGTGCCAAGGCTCTCTGCACCAAGATGTTCTTTGCACAAGTCGTGACTGCCCAATATTTTATCGTAGGAAGAAAGCTCAGAAAGACCTAACTGAAGCAGAGGTGCAACTAGAGCGCTGGCAGTTTTGA___GGATGCTGCCCGTGTAGCTTGTAATTTTTTTGTATTATCAAATATTTTTGTTTTCCTGAATTTTCTCTGGTGTATGTTTCTCTGATTTAATGGACCAGGAAATTTATTTGGTCCCTGAATCAGGATGAGCATGGTTTATACATTGTACAGTAATTGTCAAGTCCTTGTTATTTAATGTTAACCAGTTCGATATATCTTTTCTCCTTGCAAATGAGATGGAGAAAACGTCAAAATGGATACATACTTCCCAAGGCACACCCTATAAATGCAATGTGCATGCATATCCCAAATTTTAGGAGAGCACACACTATAAAACATAGATCTGCAGGCTTACATATGTATATCCAGACATGCATATAGTTGAATGGATGGATGGATGGATAGGTAGATAGAGATGGATACACAGATAGATTGGCAGGAGCAAATCCGAGCCAAAGAAGGACGCAAAAGGATAGGCACTACGTACAAAGAAATCATCATATTTCTCCCTCTTTCAACAATTTAGGCTAATTTGAAAACTTTACTGGTCATTGCATGATTGCACCTGTCAAATGAATAGTCCGATGATGATTTGACAATTATACCACAAC

Fln Alignment:

Contig1544___MNRMDLSLLVITKGLTKTGDDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQLSKPLLRIFEPILKNASKELLHGSHTRAVSISTPSNSGIMKFAKKQLSCIGCKTPISKEDQTLCSHCKGREAELYQKTVANVRELEMLFGKLWTQCQRCQGSLHQDVLCTSRDCPIFYRRKKAQKDLTEAEVQLERWQF
D5AEH5______________MNRMDLSLLVITKGLTKTGDDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQLSKPLLRIFEPILKNASKELLHGSHTRAVSISTPSNSGIMKFAKKQLSCIGCKTPISKEDQTLCSHCKGREAELYQKTVANVRELEMLFGKLWTQCQRCQASLHQDVLCTSRDCPIFYRRKKAQKDLTEAEVQLERWQF

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
359	16			83	0.994512
360		83	16		0.994512
361		83	16		0.994512
435	83		16		0.994512
643		25	75		0.996473
644	25		75		0.996473
985		12		87	0.992554
1140	10	90			0.90298
1250		88		11	0.923564
1252		88	11		0.923564
1254	90		10		0.90298
1438	88		11		0.923564
1742	16		83		0.994512
1756			75	25	1.0
1903			88	11	0.923564
1927	85			14	0.993533
2239		20		80	0.995493
2601	20		80		0.995493
2697	16	83			0.994512
2698	83			16	0.994512
2699		83	16		0.994512
3166		11	88		1.0
3167	88			11	1.0
3280		93		6	0.999264
3281		93	6		0.999264
3317		92	7		0.999602
3318	7		92		0.999664
3431			10	90	0.90298

SSRs (tot: 3)

Start position	End position	Sequence	Length
31	49	CAGTC CAGTC CAGTC CAGT	19
224	237	GAG GAG GAG GAG GA	14
3765	3782	ATGG ATGG ATGG ATGG AT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain