SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1531

Length: 1548 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1531

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Facilitates chromatin transcription complex subunit SPT16	-	-	7.448e-13	-

Source	Gene names
Sma3	AT4g10670; At4g10670; At4g10710; CHLREDRAFT_133193; GSVIVT00022540001; GSVIVT00022541001; GTC102; GTC1501; GTC3501; GTC901; GTC903; GTC904; LOC_Os12g26030; MICPUCDRAFT_24033; MICPUN_55454; OSTLU_47051; Os04g0321600; Os12g0446500; OsI_15358; OsI_38208; OsJ

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	nuclear euchromatin	GO:0005719	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	FACT complex	GO:0035101	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	cellular process	GO:0009987	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Domain of unknown function DUF1747	IPR013719	-	-
Sma3	FACT complex subunit Spt16p/Cdc68p	IPR013953	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G10710.1	SPT16 global transcription factor C chr4:6602226-6605450 REVERSE LENGTH=1074	50%
RefSeq	Arabidopsis thaliana	NP_192809.1	FACT complex subunit SPT16 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002330007.1	global transcription factor group [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABN5

Fln msg:

Fln protein: MQLSKTKPIRLSDLLIRPSFGGRGRKMTGALEGQWLGFRYSTMKQEERVDIAYKNIKHAFFQPADKEMITLVHFHLHNCVMVGNNKTKDVQFYAKVRGVIATSGNGKRSVYDPDEVEVEQQETDSKNKLNAEFSTFVLRMSELWKHSHLKDLQLMFDTPSRTLGFQGVPFKAYTFIFPTGNCLIELLNSPFLVITLSEIEIVNLERACLGENSFDMAIVFKDFRREVFLICNIPFIALDGIKLWLNSLSIKYYESIANLDWQPILKTIMVDREQFIKDGGWEFLNLEVSDSDSDYSKEFDASQPSEIEEESETEEEDSDNASVVESEDEDEDRDLEEEEGKTSYELEANERNIGREHADGADSEERRLCCEVKSAAKSRLPETRCSQGMPEKRLKVR*

Protein Length: 399

Fln nts: AGATGGTGGCAGCTCTTGTATTCATGTTATTTTTAATATACCTGGGGCCGGGTTCAATTTGAATGATATCTATCTTAAAGGAATCTCTTTTCGTTCAAAAGATACAAGGCATGTTAACCAAGTGGTGCAGTTGGTTAAAGCTCTAAGGGGCCATGTTTCATCAAGAGAATCTATAAAATCTGAAAGAGTTATACCGGTATCTCAAGAAAAG_-_ATGCAGCTTTCAAAAACAAAGCCTATCAGATTATCAGATTTATTGATTCGACCTTCATTTGGTGGTAGAGGAAGAAAGATGACTGGAGCATTAGAAGGTCAGTGGCTTGGTTTTCGTTACTCAACCATGAAGCAGGAAGAGAGAGTAGATATTGCATATAAGAATATTAAGCATGCATTCTTTCAGCCAGCAGACAAGGAAATGATTACCTTGGTACATTTCCACCTTCACAACTGCGTTATGGTAGGAAACAATAAGACAAAAGATGTACAGTTTTATGCTAAGGTGAGGGGTGTTATTGCTACATCAGGTAATGGAAAGAGATCAGTGTATGATCCGGATGAAGTTGAAGTAGAACAGCAAGAGACGGATAGTAAAAATAAATTAAATGCAGAATTCAGTACATTTGTCCTGAGAATGTCAGAACTATGGAAACATTCCCACTTAAAAGATCTTCAATTAATGTTTGATACACCTTCGAGGACGCTTGGATTCCAAGGAGTTCCTTTCAAGGCCTATACTTTTATATTTCCTACAGGCAATTGTTTGATAGAGTTGCTAAACTCACCTTTTTTGGTAATCACTTTAAGTGAGATTGAAATTGTGAATCTGGAGAGAGCATGCCTTGGTGAAAACTCTTTTGATATGGCAATTGTTTTCAAAGACTTCAGGCGGGAAGTTTTTCTTATTTGTAATATTCCTTTCATAGCACTTGATGGTATCAAGTTATGGCTCAATTCTTTGAGCATAAAGTATTATGAAAGCATAGCAAACCTGGACTGGCAACCAATATTAAAGACTATTATGGTTGACCGAGAACAGTTTATAAAAGATGGTGGTTGGGAATTTTTGAACCTTGAAGTTAGTGACTCAGACTCAGATTATTCAAAGGAGTTTGATGCATCTCAACCCTCAGAAATAGAGGAGGAATCAGAGACAGAAGAGGAAGACTCGGATAATGCATCTGTGGTAGAGTCCGAGGATGAAGATGAGGACAGAGATTTGGAAGAGGAAGAAGGGAAAACATCGTATGAACTAGAGGCAAATGAGAGAAACATAGGCAGGGAACATGCAGATGGTGCAGACAGTGAAGAGAGGAGGCTATGCTGTGAAGTAAAATCTGCTGCAAAGTCTCGACTTCCTGAGACCAGATGCTCACAGGGAATGCCTGAAAAGAGATTGAAAGTTAGATAA___GATTTTGGTGAGCATTTTGTGGAATCTTAGAAGAACTTTCCTTCTCTGTCATGTTCTTCTAATATATTCTTTATAGATTCAAACATTACTTCAAACATGGTTAAACTTTAAAAGAAGTGCATTTTTGCTTCTTGATTTAAAAA

Fln Alignment:

Contig1531___MTGALEGQWLGFRYSTMKQEERVDIAYKNIKHAFFQPADKEMITLVHFHLHNCVMVGNNKTKDVQFYAKVRGVIATSGNGKRSVYDPDEVEVEQQETDSKNKLNAEFSTFVLRMSELWKHSHLKDLQLMFDTPSRTLGFQGVPFKAYTFIFPTGNCLIELLNSPFLVITLSEIEIVNLERACLGENSFDMAIVFKDFRREVFLICNIPFIALDGIKLWLNSLSIKYYESIANLDWQPILKTIMVDREQFIKDGGWEFLNLEVSDSDSDYSKEFDA--SQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTSYELEANERNIGREHADGADSEERRLCCEVKSAAKSRLPETRCSQGMPEKRLKVR
D5ABN5______________MTGTLESHYNGFRYSTMRAEERVDVMYQNIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFFVEVMDVVQTLGGARRSMYDPDEIEEEQQERDRKNKINAEFQAFVKRVSELWEQSHLKDLELEFDIPFRELGFHGVPHKASAFIVPTVNCLVELIEIPFLVITISEIEIVNLERVGLGQKAFDMAIVFKDFKREILRIDAIPSASLDGIKEWLNSMDIKYYESRMNLNWRPILKTITDDPEKFIEDGGWEFLNMEASDSDSEGSEESDQGYEPSDVEEESESDEEDSENESLVESDEDEEEEEDSEEEEGKTWDELEAEARNADKEKGDESDSEEERRRRKAKVAGKSRVPDVRDSRG-PAKRPKVR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
834		50		50	1.0
966	80			20	0.995493
968			20	80	0.995493
969	80		20		0.995493
994		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain