SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1512

Length: 2871 nt

UniGene Fasta

>sp_v3.0_unigene1512
CATGCTGTCAAATTATTCAAGTGAGAATGCTGGGTTGAGTTCTCTTACAAAGTTGAAAGAACAAGAGAGAGTTGAGAGCACCACTAAAAAGTTGGTTTTTTCACAGCAGGATGATTTTATTAGTAAAAATGGGAGAAGTTCCAGTGCCAAGTTGGAGGAAGAAAAGGGCACAACAGAAGAGAATGCAAAAACTGCATCTGAGAGATCGGGTTTCCTGGCAATCTCCAATAGTAATTCTCAGAAGGTTTTCAAAGAATCCTCTCATATATCTGGAAGCAGCAATGTCTTGAGGTCAGGGATAGAACTGGATGAAAAGATCTCTAATGTGGATTATGAGAAAGGCAACAAAACTTCCCAGAGATTGTTGAAAACTTCATCGTCTAAACCTGTATATGGTGAAACCTCTGCTTTAGTAGCAGAGAAAAATAAATCCACTACAAGCTCTGGAAAAGCTGATAATTCATCTGAGAATATGTTGCAAACTTCATCTTATACATTGGTTCGCAATGGCGTGCTCAGTTCAGCTACAGAAGTGGAGAAAATAAGATCCACTAGTGACCATAAAACAAGCAGTAAAATTTCCCAGTTTTCCGGTGATCTCCGTTCTAAATCTTCAAGTAATGAGATCTTAGGAATGACCACAGAACTGGAAAAGAAGAAATACACCACAGACACGAACACACAGGCAATGTTTGGGAAATCGGCATCTGGAAAACTTTCTGATGAATCAGAATGTAGCTTGGAAATGTTTTCAGCTGAAGGAACTGAGAACCATGGATTGAATGAAAAAAATTTCAGAGGAATCTCCCCCTCAAGCACACAATTCTCAGCTATTATCTGGGAATTTTGCTGCCGAAGGTCCCTCAGAGGAAGTCTGGGCTATTGCAGGGTGCTCTTCACGAGAAGAATCCAAGGAACTACATTCTTCACAAGAAGAATCCAAGGAACTACATTCTTCAGGTAATGAAAAAGAAGAAAGGGGTTCTGAAACATTGACTTCTGAAGAGCCTTCAGACAATTTGCAAAAAAACATTGCTGGATTGGAGGAAGGTAACTCTACTGCTTCCAAATCAGATGGAAAGATTATTGTTGGAAGACATTCTAGGGGGCTGTGGAGCTCTATAGCAGAACTTTGCAGTAAGGGTTGGAGTTCGCATGTGGACCCAGAAAACTCTACTATGAAATCAGGTTCAGGAAGACCATCTACTGAATCTCCAGATAGTGAGGAATGGTTTTCTGTTCCAGAGTTGGAGGATGAGGAGTACACCTCAAAGGAAAAAAAAGGCAAGGATAGAAAGAAAATATCAGCCAAGAGACAGGTAGATGCTGTTATTTCGAGTACAGGACCAAGTAAAACTGTAGATTTGAAAGAAACTGAGAGCCCCCAAGAAAAAAAGGCAGAAGAAAGTTCTTTGGATTATTCACAGTTAACAAGGAGACGTATCTCAAGTGCAGGAAATGGACATGAAAGGCAGATAAGGGGGAAGGGAGGGCGATTGGTTGCTATTGCAGATACAAAGAAAACAGAGGGAACCAAACAGGTAGAGGTGCAGAAGGCTGCTATACAATGGGTTTCAGAAGGATCACTAGAAGATGAATTAGCAGTTTCTATTGGACGCGTTCCAAGTGGGTCACATGAAGAACATGATTGTTTGGAGAGGGGAAAGGGAGAAATATCTCTGGTAAACAAGGATGAAATAGAGGAACATGACGACATCCAGGAATTGGTTCAAAGTTCAGAAATTGAAGAAAAGGAAAAAATGCCTAGCAAACTTAAGCTAACCAATCAAGTTCCCAAGGAAACTTTCATTTTATGGGAAGAAGCACTTACATTGCAAAGTGAGCAGAGACAAGAAGATGAAAAGTTTATGAGAGAGGCTCTCTCTGAGGCCAGAATGGCTGCAGATGTCTGGGAAGTACCTGTGGGTGCTGTTTTGGTTCAGAATGGAAGAATCATTGCGCGAGCCCATAATTTAGTGGAGGAGAACAGAGATGCAACTGCACATGCAGAAATGCTTTGCATTCGTTATGCTTCGAATCAACTTAAGACATGGCGCCTTGCGGAGTCAACCCTATACGTGACACTGGAGCCATGTGCAATGTGTGCTGGAGCTATTCTTCAGGCTAGGATTGGAACTGTGGTCTGGGGAGCACCTAACAAGCTTCTGGGAGCTGATGGTAGTTGGATAAGTCTCTTTCCTAGAGCAGGTGAGGAAAGGTTGCATGGCACAGATGGGGGGCCGCCTTCAACTGCTCCAGTTCATCCATTCCATCCAAATATTAGAGTTCGTCGAGGGGTGCTTGCCAGTGAGTGTTCCAATGTCATGCAGCAATTCTTTAAATTGAGAAGGAAAAGCGAGAAAAAAACTGAATCCCATTCTTGTTTTTCTCTTACAAATTGTCAATCTAAGTTGTTCGCTAAACTTCATGATATGTTCAGCATATTTTGTCTATGAGGTTCTTCCCCTCAACTATATACTGTTGCTTAGTCTCTGGCTCGATTCTGTCAAGGTCAACTGATTGAATTGTCTTGAAATTGACCAATCAGTTATGTTTTGCTTGTAGTTGATAAGCATATCTTATACCATTTACCGGGTCCATGGATCTTTTATTTCCTGGTAAGTGGCAATGTAACACTTTGTACTTGTGAGCCAGAATGGATATGCATTCTGTAAATACTTATGTCGAAATAACTCTTTAAAGAGCATGTGGAGACAGCCACAAAGTACGTTCAGAAAGACATTTATGTGAAGCCCAACATGCAGTGAGAAAACAGCATCCCAAATAATTCCAGAGTCCACAGAGTAATTACAAGATATGCACATTACATGTGAAATGCTAATCTAGAGCAAACTAAGAAAATTTACGAAC

Ace file of the UniGene sp_v3.0_unigene1512

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative deaminase [Arabidopsis thaliana] gb\|AAR23701.1\| At1g68720 [Arabidopsis thaliana]	-	-	0.0	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Cytidine/deoxycytidylate deaminase family protein	-	-	1.201e-08	-

Source	Gene names
Sma3	CHLREDRAFT_74200; GSVIVT00030244001; MICPUCDRAFT_26164; MICPUN_96347; OSTLU_37349; Ot04g01260; PHYPADRAFT_70762; POPTRDRAFT_566701; POPTRDRAFT_765974; RCOM_1464010;

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	CMP/dCMP deaminase, zinc-binding	IPR002125	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	APOBEC/CMP deaminase, zinc-binding	IPR016192	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2F6

Fln msg: your sequence is longer than subject: 558 - 186

Fln protein: MKKISEESPPQAHNSQLLSGNFAAEGPSEEVWAIAGCSSREESKELHSSQEESKELHSSGNEKEERGSETLTSEEPSDNLQKNIAGLEEGNSTASKSDGKIIVGRHSRGLWSSIAELCSKGWSSHVDPENSTMKSGSGRPSTESPDSEEWFSVPELEDEEYTSKEKKGKDRKKISAKRQVDAVISSTGPSKTVDLKETESPQEKKAEESSLDYSQLTRRRISSAGNGHERQIRGKGGRLVAIADTKKTEGTKQVEVQKAAIQWVSEGSLEDELAVSIGRVPSGSHEEHDCLERGKGEISLVNKDEIEEHDDIQELVQSSEIEEKEKMPSKLKLTNQVPKETFILWEEALTLQSEQRQEDEKFMREALSEARMAADVWEVPVGAVLVQNGRIIARAHNLVEENRDATAHAEMLCIRYASNQLKTWRLAESTLYVTLEPCAMCAGAILQARIGTVVWGAPNKLLGADGSWISLFPRAGEERLHGTDGGPPSTAPVHPFHPNIRVRRGVLASECSNVMQQFFKLRRKSEKKTESHSCFSLTNCQSKLFAKLHDMFSIFCL*

Protein Length: 559

Fln nts: CATGCTGTCAAATTATTCAAGTGAGAATGCTGGGTTGAGTTCTCTTACAAAGTTGAAAGAACAAGAGAGAGTTGAGAGCACCACTAAAAAGTTGGTTTTTTCACAGCAGGATGATTTTATTAGTAAAAATGGGAGAAGTTCCAGTGCCAAGTTGGAGGAAGAAAAGGGCACAACAGAAGAGAATGCAAAAACTGCATCTGAGAGATCGGGTTTCCTGGCAATCTCCAATAGTAATTCTCAGAAGGTTTTCAAAGAATCCTCTCATATATCTGGAAGCAGCAATGTCTTGAGGTCAGGGATAGAACTGGATGAAAAGATCTCTAATGTGGATTATGAGAAAGGCAACAAAACTTCCCAGAGATTGTTGAAAACTTCATCGTCTAAACCTGTATATGGTGAAACCTCTGCTTTAGTAGCAGAGAAAAATAAATCCACTACAAGCTCTGGAAAAGCTGATAATTCATCTGAGAATATGTTGCAAACTTCATCTTATACATTGGTTCGCAATGGCGTGCTCAGTTCAGCTACAGAAGTGGAGAAAATAAGATCCACTAGTGACCATAAAACAAGCAGTAAAATTTCCCAGTTTTCCGGTGATCTCCGTTCTAAATCTTCAAGTAATGAGATCTTAGGAATGACCACAGAACTGGAAAAGAAGAAATACACCACAGACACGAACACACAGGCAATGTTTGGGAAATCGGCATCTGGAAAACTTTCTGATGAATCAGAATGTAGCTTGGAAATGTTTTCAGCTGAAGGAACTGAGAACCATGGATTGA_-_ATGAAAAAAATTTCAGAGGAATCTCCCCCTCAAGCACACAATTCTCAGCTATTATCTGGGAATTTTGCTGCCGAAGGTCCCTCAGAGGAAGTCTGGGCTATTGCAGGGTGCTCTTCACGAGAAGAATCCAAGGAACTACATTCTTCACAAGAAGAATCCAAGGAACTACATTCTTCAGGTAATGAAAAAGAAGAAAGGGGTTCTGAAACATTGACTTCTGAAGAGCCTTCAGACAATTTGCAAAAAAACATTGCTGGATTGGAGGAAGGTAACTCTACTGCTTCCAAATCAGATGGAAAGATTATTGTTGGAAGACATTCTAGGGGGCTGTGGAGCTCTATAGCAGAACTTTGCAGTAAGGGTTGGAGTTCGCATGTGGACCCAGAAAACTCTACTATGAAATCAGGTTCAGGAAGACCATCTACTGAATCTCCAGATAGTGAGGAATGGTTTTCTGTTCCAGAGTTGGAGGATGAGGAGTACACCTCAAAGGAAAAAAAAGGCAAGGATAGAAAGAAAATATCAGCCAAGAGACAGGTAGATGCTGTTATTTCGAGTACAGGACCAAGTAAAACTGTAGATTTGAAAGAAACTGAGAGCCCCCAAGAAAAAAAGGCAGAAGAAAGTTCTTTGGATTATTCACAGTTAACAAGGAGACGTATCTCAAGTGCAGGAAATGGACATGAAAGGCAGATAAGGGGGAAGGGAGGGCGATTGGTTGCTATTGCAGATACAAAGAAAACAGAGGGAACCAAACAGGTAGAGGTGCAGAAGGCTGCTATACAATGGGTTTCAGAAGGATCACTAGAAGATGAATTAGCAGTTTCTATTGGACGCGTTCCAAGTGGGTCACATGAAGAACATGATTGTTTGGAGAGGGGAAAGGGAGAAATATCTCTGGTAAACAAGGATGAAATAGAGGAACATGACGACATCCAGGAATTGGTTCAAAGTTCAGAAATTGAAGAAAAGGAAAAAATGCCTAGCAAACTTAAGCTAACCAATCAAGTTCCCAAGGAAACTTTCATTTTATGGGAAGAAGCACTTACATTGCAAAGTGAGCAGAGACAAGAAGATGAAAAGTTTATGAGAGAGGCTCTCTCTGAGGCCAGAATGGCTGCAGATGTCTGGGAAGTACCTGTGGGTGCTGTTTTGGTTCAGAATGGAAGAATCATTGCGCGAGCCCATAATTTAGTGGAGGAGAACAGAGATGCAACTGCACATGCAGAAATGCTTTGCATTCGTTATGCTTCGAATCAACTTAAGACATGGCGCCTTGCGGAGTCAACCCTATACGTGACACTGGAGCCATGTGCAATGTGTGCTGGAGCTATTCTTCAGGCTAGGATTGGAACTGTGGTCTGGGGAGCACCTAACAAGCTTCTGGGAGCTGATGGTAGTTGGATAAGTCTCTTTCCTAGAGCAGGTGAGGAAAGGTTGCATGGCACAGATGGGGGGCCGCCTTCAACTGCTCCAGTTCATCCATTCCATCCAAATATTAGAGTTCGTCGAGGGGTGCTTGCCAGTGAGTGTTCCAATGTCATGCAGCAATTCTTTAAATTGAGAAGGAAAAGCGAGAAAAAAACTGAATCCCATTCTTGTTTTTCTCTTACAAATTGTCAATCTAAGTTGTTCGCTAAACTTCATGATATGTTCAGCATATTTTGTCTATGA___GGTTCTTCCCCTCAACTATATACTGTTGCTTAGTCTCTGGCTCGATTCTGTCAAGGTCAACTGATTGAATTGTCTTGAAATTGACCAATCAGTTATGTTTTGCTTGTAGTTGATAAGCATATCTTATACCATTTACCGGGTCCATGGATCTTTTATTTCCTGGTAAGTGGCAATGTAACACTTTGTACTTGTGAGCCAGAATGGATATGCATTCTGTAAATACTTATGTCGAAATAACTCTTTAAAGAGCATGTGGAGACAGCCACAAAGTACGTTCAGAAAGACATTTATGTGAAGCCCAACATGCAGTGAGAAAACAGCATCCCAAATAATTCCAGAGTCCACAGAGTAATTACAAGATATGCACATTACATGTGAAATGCTAATCTAGAGCAAACTAAGAAAATTTACGAAC

Fln Alignment:

Contig1512___QSEQRQEDEKFMREALSEARMAADVWEV-PVGAVLVQNGRIIARAHNLVEENRDATAHAEMLCIRYASNQLKTWRLAESTLYVTLEPCAMCAGAILQARIGTVVWGA
A9P2F6______________QEAVQDRDLKFLSKAVEEAYSGVNCGHGGPFGAIVVRNDEVIASCHNMVLKNMDPTAHAEVTAIREACNKLGRIELSDCEIFASCEPCPMCFGAIHLSRIKRLLYGA

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
697	33		66		0.997452
698		33	66		0.997452
699	66			33	0.997452
701	66			33	0.997452
703		66	33		0.997452
730		75	25		0.996473
731	75		25		0.996473
739			80	20	0.995493
740		80	20		0.995493
741			20	80	0.995493
742			20	80	0.995493
942		85	14		0.993533
943	85		14		0.993533
944	85		14		0.993533
1039		80	20		0.995493
1055		40		60	1.0
1197			88	11	0.923564
1200	87		12		0.992554
1274	83		16		0.994512
1639		87		12	0.992554
1640	87			12	0.992554
1641			12	87	0.992554
1643	87		12		0.992554
1692		50		50	1.0
1740		33		66	0.997452
2071			12	87	0.992554
2072		87	12		0.992554
2143		10	90		0.90298
2213	37		62		1.0
2216	62		37		1.0
2619	10			90	0.90298
2622			10	90	0.90298
2691	63		36		1.0
2728	11	88			0.923564
2729	11	88			0.923564
2735	11		88		0.923564
2736	11			88	0.923564
2738	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain