SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1484

Length: 3200 nt

UniGene Fasta

>sp_v3.0_unigene1484
AAAGTCTTGCGCTATCCCATTACCCTTACAATTCCCCTCTGATATTCTCCACTTCTCCCTCGCCCCGCCCCGTCCTGGATCCATTTGTACTCACTTTGCCCGCCATTTTCCTTATTTTTCTCCCAATATCTGCAGTTGTTTACGTTTTCCAGCTTCCCGTTTATCTTCTCTTCATAACTGCAAATTGCGCATAGATTTTGTCTTGGGATCAAATCCATCAGCTGCCGTTTTCGGCTCTCAAGTCAGGGATTGAGCCCTAGATACATCATCTACAACTTGCTGATCCGTGAGGGGATGTTGTCTCAGGCTAGCTTTTTTCTAGGGCCTGGTATATGCTTTTAGGGATTAGGGTTTGGGCTATTGAGGGTTTGCGCGTATATCCCATATTCAGGGGTCTGCAGGGTTCGAAGCCTAGACGGTATTTGGGATATCTTCGAGGATGGCAGGAGAACGGCAGTATGGTGTTACAGAGCCCATATCAATGGCAGGACCCACTGAGGCTGATCTTCACAGGACTCGGCAGCTGGAAGAGTTTTTGATGAGCGCGGGCCTTTATGAGAGTCCAGAGGACGGTGCCTTAAGGAAGGAGGTTTTGGCCCAAATTGATAAGATTGCAAAAGCATGGGTCAAGAGGATAACTGATGAAAGAGGGTATGGTGAACAGTTGGTGGAAGAAGCAAATGCGAAAATTTATACATTTGGGTCTTATCGTCTATCGGTACATGGTCCAGGATCAGATCTAGACACGCTATGTGTAGGGCCTTGCTATGTGATTAGGGAGGAGGATTTTTTTGGCGTTTTGCATGATATGTTGGCCGAAATGCCGGAGGTCTCTGAACTCCATCCAGTCCCTGATGCACATGTGCCTGTAATGAAGTTTAAGTTCAGAGGGATATCTATTGATTTGATCTATGCTAGCATATCACTTTGGGTTGTTCCTGAAGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGACCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATGTCACGGGTTTTTTGGGTGGTGTGAATTGGGCTTTATTAGTTGCTCGGATTTGTCAACTGTATCCAAATGCAATTCCCAGTATGTTGGTTTCGCGATTCTTTAGAGTCTATACACAATGGCGATGGCCAAATCCTGTGATGCTTTGTTCGATAGAGGAGGGTACCCTGGGATTTCCTGTATGGGATCCACGAAAGAACCCTCGTGATCGGACACATCATATGCCCATTATAACTCCTGCTTATCCGTGCATGAACTCCAGTTATAATGTATCTACGAGTACACTTCGTGTCATGACAGAGCAATTTCAGACTGGAAACAAGATTTGTGAGGATATTGAGATGAACAAGGCAGGCTGGGATGCTCTTTTTGAGTCTTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATCATGTATTTTCTTTGGAGACCAGGAATGGACATCTTTGTATCACATGTACGTCGAAAACAAATTCCACCATATGTCTTTCCTGGAGGGGTATTACCTAGTCGACCTGCAAGAGGTGCGAATCAAACAGTAAAGGCTTCTCCAGGGAGTAGTAGTGGAAATTCTGGCGATGAATCTCCAGAACAGTGCAGCAACAAGTCATCTGTGAAACTGAACAAGAGAAAACATGAAACTGCAGGGAACATTGACAAAGGAGACAAAAAACCTGCTATTAGGTCAAATCGTGTGGTAGCTTGTTTAGGAGCAATGGAAGGTAGTCCATGTCGAGGCAATATAGCTGAAGAAGCAGTTTCTCAGAGGGTAACTGATGGTGATGTACAAAGCCGTCTGAAACAAAAAGTTTCTAAGGTCCTGGGTAGTGCTAGAACCATAGACACAGTTTCTGGCAAAACTTCAACAGAAGGATCATTGGGAAATGTCACTGCAATGAGAGCTGAAAATTTCCAAAATGGGCGGAAGGTGGAGCACTCGGTGTCACTTGGAACGATCTTGGCAGTTCAGGCAGGATCAAAAAACGATGCCGTTGGTAAGTCAGTCAGAAGGGTTACTCTTGCTTCGAGAGCATGATGGTTAAAGGAATCTGCTTTAAACTTTGAAGGCCACTTCCAGTTACCTGGTCATCGGATTTTGATCTCATTGATTCTATTCAATCTTCAGACTGACATCTTATTCAAACATTTGCATTTTCATAGAAAAACCTGTAAGTGATTCCTTTGTTTTTAATTTTTCTTCCTTAAGATAGATAATTACCGTGTCTGAAGAGGGAGTGAGACTGGTCTCGGGGGAATTCTCGATATGATGGCAAAACGGAAGGGATGAAAGAAGTCCTGTGGAGTAAGGTTTATATGAATGATGCAGGTCTGAACAAAACCCTTGGGATACCTTCATTTCTTCATTTGTAAGCATGCCTTTGCATGTAGTCATAGTTGCTGATACTTTGGCATGTCTTAGTGCTCCTTCAGATTTTCCAAATGTACAGTGATCTTTTCTGCTGCAGATGCTGCAGGTAACTCCTCCAGTGTGTTGAGAAAGAATGGTTATTCTGCGGAGAGTTATCATCATTTAGCCACTTCCAAGTGCAGTACATCTGTTGTGCTAAAGACATAGGTTGCTGTTTTTAGGTGTACACTATAGTCTCATTAGGTCGGGGGGCGAGGGGGGTCCGCATTGAAGAGGTTCAACTATTCTAGTATCTATTGAGGATAATTTCGAGATTCTGGTTATAGACGGTTATGTAGTACCTCCCCTGGATGTTATAAACTAATTGGCCGAACTTGATGTAATATACAACTTTTTGCCGAAAGAATTTTAATGTATATATTGGGCATTTATTTCTAGTGCA

Ace file of the UniGene sp_v3.0_unigene1484

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative poly(A) polymerase [Oryza sativa Japonica Group]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Putative polynucleotide adenylyltransferase	-	-	1.803e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	6.788e-18	-

Source	Gene names
Sma3	AT4G32850; At1g17980; At2g25850; At4g32850; CHLREDRAFT_126151; F2H15.20; GSVIVT00013792001; GSVIVT00016654001; GSVIVT00017746001; GSVIVT00030424001; GSVIVT00033174001; GSVIVT00034292001; MICPUCDRAFT_68905; MICPUN_98102; OJ1353_F08.12; OSJNBa0090E14.29; OS

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3		GO:0006350	Biological Process	-
Sma3	RNA polyadenylation	GO:0043631	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF599	IPR006747	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G32850.8	nPAP nuclear poly(a) polymerase chr4:15850134-15854443 FORWARD LENGTH=765	68%
RefSeq	Arabidopsis thaliana	NP_001031778.1	nuclear poly(a) polymerase [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002322074.1	predicted protein, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 662 - 701

Fln protein: MAGERQYGVTEPISMAGPTEADLHRTRQLEEFLMSAGLYESPEDGALRKEVLAQIDKIAKAWVKRITDERGYGEQLVEEANAKIYTFGSYRLSVHGPGSDLDTLCVGPCYVIREEDFFGVLHDMLAEMPEVSELHPVPDAHVPVMKFKFRGISIDLIYASISLWVVPEDFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVDHFRTTLRCMKLWAKRRGLYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEGTLGFPVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFQTGNKICEDIEMNKAGWDALFESYPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSVIMYFLWRPGMDIFVSHVRRKQIPPYVFPGGVLPSRPARGANQTVKASPGSSSGNSGDESPEQCSNKSSVKLNKRKHETAGNIDKGDKKPAIRSNRVVACLGAMEGSPCRGNIAEEAVSQRVTDGDVQSRLKQKVSKVLGSARTIDTVSGKTSTEGSLGNVTAMRAENFQNGRKVEHSVSLGTILAVQAGSKNDAVGKSVRRVTLASRA*

Protein Length: 663

Fln nts: AAAGTCTTGCGCTATCCCATTACCCTTACAATTCCCCTCTGATATTCTCCACTTCTCCCTCGCCCCGCCCCGTCCTGGATCCATTTGTACTCACTTTGCCCGCCATTTTCCTTATTTTTCTCCCAATATCTGCAGTTGTTTACGTTTTCCAGCTTCCCGTTTATCTTCTCTTCATAACTGCAAATTGCGCATAGATTTTGTCTTGGGATCAAATCCATCAGCTGCCGTTTTCGGCTCTCAAGTCAGGGATTGAGCCCTAGATACATCATCTACAACTTGCTGATCCGTGAGGGGATGTTGTCTCAGGCTAGCTTTTTTCTAGGGCCTGGTATATGCTTTTAGGGATTAGGGTTTGGGCTATTGAGGGTTTGCGCGTATATCCCATATTCAGGGGTCTGCAGGGTTCGAAGCCTAGACGGTATTTGGGATATCTTCGAGG_-_ATGGCAGGAGAACGGCAGTATGGTGTTACAGAGCCCATATCAATGGCAGGACCCACTGAGGCTGATCTTCACAGGACTCGGCAGCTGGAAGAGTTTTTGATGAGCGCGGGCCTTTATGAGAGTCCAGAGGACGGTGCCTTAAGGAAGGAGGTTTTGGCCCAAATTGATAAGATTGCAAAAGCATGGGTCAAGAGGATAACTGATGAAAGAGGGTATGGTGAACAGTTGGTGGAAGAAGCAAATGCGAAAATTTATACATTTGGGTCTTATCGTCTATCGGTACATGGTCCAGGATCAGATCTAGACACGCTATGTGTAGGGCCTTGCTATGTGATTAGGGAGGAGGATTTTTTTGGCGTTTTGCATGATATGTTGGCCGAAATGCCGGAGGTCTCTGAACTCCATCCAGTCCCTGATGCACATGTGCCTGTAATGAAGTTTAAGTTCAGAGGGATATCTATTGATTTGATCTATGCTAGCATATCACTTTGGGTTGTTCCTGAAGATTTTGATATCTCTCAGGAGTCAGTACTTTGTGATGTTGATGAACAAAGTGCAAGGAGCCTCAATGGATGCAGAGTTGCAGATCAGATCTTGCGCCTTGTACCCAATGTTGACCATTTTCGTACAACACTCAGATGCATGAAGCTCTGGGCTAAAAGGCGCGGTCTCTACTCAAATGTCACGGGTTTTTTGGGTGGTGTGAATTGGGCTTTATTAGTTGCTCGGATTTGTCAACTGTATCCAAATGCAATTCCCAGTATGTTGGTTTCGCGATTCTTTAGAGTCTATACACAATGGCGATGGCCAAATCCTGTGATGCTTTGTTCGATAGAGGAGGGTACCCTGGGATTTCCTGTATGGGATCCACGAAAGAACCCTCGTGATCGGACACATCATATGCCCATTATAACTCCTGCTTATCCGTGCATGAACTCCAGTTATAATGTATCTACGAGTACACTTCGTGTCATGACAGAGCAATTTCAGACTGGAAACAAGATTTGTGAGGATATTGAGATGAACAAGGCAGGCTGGGATGCTCTTTTTGAGTCTTATCCTTTCTTTGAGTCATACAGAAATTATTTGCAAATAGACATCGTAGCTGCAGATCAAGATGATTTGAGGACGTGGAAAGGATGGGTTGAGTCACGATTAAGGCAACTTACTTTGAAGATTGAACGAGACACATTTGGGATGCTGCAGTGTCATCCTTACCCTTGTGAATATAGCAACACATCTAGTCAAGGATATCATTGTGCATATTTTATGGGTTTACAAAGGAAACAAGGAGTGCCAATACAGGAAGGTCAACAGTTTGACATACGTGGCACTGTAGACGAATTCAGGCACTCAGTGATCATGTATTTTCTTTGGAGACCAGGAATGGACATCTTTGTATCACATGTACGTCGAAAACAAATTCCACCATATGTCTTTCCTGGAGGGGTATTACCTAGTCGACCTGCAAGAGGTGCGAATCAAACAGTAAAGGCTTCTCCAGGGAGTAGTAGTGGAAATTCTGGCGATGAATCTCCAGAACAGTGCAGCAACAAGTCATCTGTGAAACTGAACAAGAGAAAACATGAAACTGCAGGGAACATTGACAAAGGAGACAAAAAACCTGCTATTAGGTCAAATCGTGTGGTAGCTTGTTTAGGAGCAATGGAAGGTAGTCCATGTCGAGGCAATATAGCTGAAGAAGCAGTTTCTCAGAGGGTAACTGATGGTGATGTACAAAGCCGTCTGAAACAAAAAGTTTCTAAGGTCCTGGGTAGTGCTAGAACCATAGACACAGTTTCTGGCAAAACTTCAACAGAAGGATCATTGGGAAATGTCACTGCAATGAGAGCTGAAAATTTCCAAAATGGGCGGAAGGTGGAGCACTCGGTGTCACTTGGAACGATCTTGGCAGTTCAGGCAGGATCAAAAAACGATGCCGTTGGTAAGTCAGTCAGAAGGGTTACTCTTGCTTCGAGAGCATGATGGTTAAAGGAATCTGCTTTAAACTTTGAAGGCCACTTCCAGTTACCTGGTCATCGGATTTTGATCTCATTGATTCTATTCAATCTTCAGACTGACATCTTATTCAAACATTTGCATTTTCATAGAAAAACCTGTAAGTGATTCCTTTGTTTTTAATTTTTCTTCCTTAAGATAGATAATTACCGTGTCTGAAGAGGGAGTGAGACTGGTCTCGGGGGAATTCTCGATATGATGGCAAAACGGAAGGGATGAAAGAAGTCCTGTGGAGTAAGGTTTATATGAATGATGCAGGTCTGAACAAAACCCTTGGGATACCTTCATTTCTTCATTTGTAAGCATGCCTTTGCATGTAGTCATAGTTGCTGATACTTTGGCATGTCTTAGTGCTCCTTCAGATTTTCCAAATGTACAGTGATCTTTTCTGCTGCAGATGCTGCAGGTAACTCCTCCAGTGTGTTGAGAAAGAATGGTTATTCTGCGGAGAGTTATCATCATTTAGCCACTTCCAAGTGCAGTACATCTGTTGTGCTAAAGACATAGGTTGCTGTTTTTAGGTGTACACTATAGTCTCATTAGGTCGGGGGGCGAGGGGGGTCCGCATTGAAGAGGTTCAACTATTCTAGTATCTATTGAGGATAATTTCGAGATTCTGGTTATAGACGGTTATGTAGTACCTCCCCTGGATGTTATAAACTAATTGGCCGAACTTGATGTAATATACAACTTTTTGCCGAAAGAATTTTAATGTATATATTGGGCATTTATTTCTAGTGCA

Fln Alignment:

Contig1484___RQYGVTEPISMAGPTEADLHRTRQLEEFLMSAGLYESPEDGALRKEVLAQIDKIAKAWVKRITDERGYGEQLVEEANAKIYTFGSYRLSVHGPGSDLDTLCVGPCYVIREEDFFGVLHDMLAEMPEVSELHPVPDAHVPVMKFKFRGISIDLIYASISLWVVPEDFDISQESVLCDVDEQSARSLNGCRVADQILRLVPNVDHFRTTLRCMKLWAKRRGLYSNVTGFLGGVNWALLVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEEGTLGFPVWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFQTGNKICEDIEMNKAGWDALFESYPFFESYRNYLQIDIVAADQDDLRTWKGWVESRLRQLTLKIERDTFGMLQCHPYPCEYSNTSSQGYHCAYFMGLQRKQGVPIQEGQQFDIRGTVDEFRHSVIMYFLWRPGMDIFVSHVRRKQIPPYVFPGGVLPSRPARGANQTVK-------ASPGSSSGNSGDESPEQCSNKSSVKLNKRKHETAGNIDKGDKKPAIRSNRV------VACLGAMEGSPCRGNIAEE-----------AVSQRVTDGDVQSRLKQKVSKVLGSARTI---DTVSGKTSTEGSLGNVTAMRAENFQNG-RKVEHSVSLGTILAVQAGSKNDAVGKSVRRVTLASRA
C0PQ25______________RQYGITKPISLSGPSGSDLQRSRELEEFLVSAGLYESEEESALREEVLAQIDQIVKQWVKQLTREKGYTEQMVEESNAKVFTFGSYRLGVHGPGADIDTLCVGPEYADQEEDFFILLHDMLAEMPEVMELNRVPDAHVPVMKFKFRGISIDLLYASVALRIVPDDLDISQESVLYNVDEQTVRSLNGCRVNEQILRLVPNVEHFRTTLRCMKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVFTQWRWPNPVMLRSIKEEELGFPVWDPRKNPRDRTHHMPIITPAYPGMNSSYNVSTSTLRVMTEQFQQGNKMCEDIEMNKANWSALFDPYPFFEAYKNYLQVDIVAADQDDLRLWKGWVESRLRQLTLKIERDTFGMLQCHPYPTEYVDNSKQCPHCAFFMGLQRKQGVLIQEGQQFDIRGTVDEFRQSVGMYMFWKPGMDIYVSHVRRKQIPSYVFPEGVRRVRSGRAANQIGKTSPQGRESSPKCCNGNFGDDIVEECNANSAEKANKRKHDMTTDVGKAEKRAAVSPNDVKSASLSVSDVSNRSGLASQTSSAEEPDHSSSTAGYGAIAKPVEVGEKPSKGCVKNGDQLEQKRSFTQKESVEEIGSGKG-LQNSCILRAGKCQNGSEELESSINVEMILPSHAGVKSETVQKPVLRVSLASTA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
209		25		75	0.996473
287	50		50		1.0
297		25		75	0.996473
2688		15		84	0.999986
2971		92		8	0.999718
3101	25	75			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain