SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1443

Length: 3458 nt

UniGene Fasta

>sp_v3.0_unigene1443
AGCTCATTAATTTTCTGCGATTTTTTAAAATCATACGTCGTGGCTTCAAATACTGTAAATTTTGATTTCTATAACGTCCAAGTGGACAAATGCAAGGATTTCTGGTTTTTACAGAATTCAGGTTCATTCTTTTTTCATAGATAAATGGCCGCAATACTGCCTGGAGACCCGACAGTTTCGCGATGTCGACATTCTGCCATTTCACCTGTATTAAAATCAGGAGCTTTTCGCCCCAAACTAGGAGTTTCCTATTGCCGAGCCAGCGTCTTGGTGTCGAGCAGAATTTCGGGCGGTTTTCTGACAAATTTTGGCCCTAAAGACGCTCTGGTGCAGCGGAGCATCAGAGAATCTAGGTTTTACGGCGGAGTTTTCAGGTTCCGGCAGCTGCAAATCACTGCAAGTGGCTCCTGCGAGCAAGACAAGAATTCCAAAACCACTTCTAACGAAAACGGCGACGAGAACAGGTCGAGGAATGCGAATGCCACTTCCGGCAATTCGAATGGCGGTATTGAAGAAGCTGCTAGTAAGAATTCGTCGTCCCCTGCATCGCGCCCACCGCAGGAAAACCAAAGCCGGGGTTGGTGGAAAAATCGGAAGTGGAATTGGAGAGAAACCCTTGTAAACCACGGCCGGGAATTTGGCACTCTGTTCTTGCAATTGGTAGTGGTTTTGTTATTGATGCGTTTTTTGCGGCCTGGTATTCCGATGCCTGGTACGGAATCTAGGGTTTCTACGAGCTACGTCAGTGTTCCTTTCAGCGAGTTCTTGAGCAGAATTAACAGTAACGAAGTTCAGAAAGTGGAGGTAGATGGAGTGCATTTTACGTTCCGTCTGAAACCAGAAGATATTAACCCTCCGGAAAATACAGTGGTTTTGGATCGCACTGCTAAGCGGGTATTGTATACCACAACGCGGCCGACCGATATGAAAACGCCTTATGAAAAGATGTTGGAAAACCAGGTGGAATTTGGCGCTCCTGATAAGCGGTCGGGTGGTTTTCTTAACTCTGCAATGGTTGCACTTCTCTATATTGGTCTAGTTGCTGGACTTCTCAACCGATTTCCGTTGAAATTTTCTCAGCGTTCACCTGGTCGTATGAGAAACAATAAAGGTCGAGGCTCTGGCAGCCCAAGAACCGGTGAAAACGGGGATATTATAACATTCGCCGATGTTGCAGGCGTGGATGAAGCTAAGGAAGAGCTTGAAGAAATTGTTGAATTTTTGCGGAATCCGGATAAATATACTCGACTTGGTGCTCGTCCTCCTCGAGGAATTCTCCTGGTAGGACTCCCTGGAACAGGAAAGACTCTTTTAGCAAAGGCTGTAGCTGGTGAAGCTGATGTTCCGTTTATAAGTTGTTCAGCTAGTGAGTTTGTGGAGCTGTATGTTGGAATGGGTGCATCTCGCGTGCGTGATCTCTTTGCGAGAGCCAAGAAGGATGCACCATCGATTATTTTCATTGACGAGATTGATGCTGTGGCCAAAAGTCGTGATGGTCGAGTCCGTGTTGTCAGCAATGACGAGCGTGAGCAAACCTTAAATCAATTGCTCACTGAGATGGATGGTTTTGAGAGCAACTCAGCAGTGATTGTGCTTGGAGCAACAAATAGAGCAGATGTTTTGGACCCTGCACTTCGCCGGCCTGGTCGATTTGATCGAATTGTTATGGTGGAGCCTCCTGATAGGCATGGGAGGGAAGCTATTTTAAAGGTTCATATTTCGAGAAAGAAACTACCCTTGGCTACAGATGTGGATATGAATGCTATTTCCTCTGCTACCACTGGCTTCACTGGGGCAGATCTAGGAAATCTCGTGAATGAAGCTGCGTTATTGGCTGGGCGAGCTAATAAACTGGAGGTATCAAAGGCAGATTTTATACAAGCTGTGGAGCGCGCCATTGCTGGTATAGAAAAAAACGTTCGACATTGCAACTCAGTGAGAAAGCAGTTGTGGCTCGACATGAAGCAGGCCATGCTGTTGTAGGTACAGCTGTTGCCAACCTTCTTCCTGGACAGCCTCGAGTAGAGAAACTGAGTATATTGCCTAGATCAGGAGGGGCTCTAGGATTTACTTACACACCACCTGGAAATGAAGATCGTCACTTGCTATTCGTTGATGAGTTACGTGGTCGCTTAGTGACTCTTCTAGGGGGACGTGCTGCAGAGGAAGTGGTATACTCAGGTCGTGTTTCCACTGGTGCACTTGATGATATAAAGCGTGCAACGGATATGGCATACAAAGCTGTCGCTGAATATGGTCTTAACAAGTCCATAGGCCCAATTTCATTGGCGACTTTGTCGGGTGGTGGTCTTGATGAGTCTGGAGGAGCAATGCCATGGGCCAAGGATCAGGGACATATGGTAGACCTTGTTCAAAGAGAGGTGAAAATTTTGCTACAATCGGCTTTGACAATGGCACTCCTTGTCATACGCTCTAATCCCACTGTACTTGAGGGCCTTGGTGCACAATTAGAAGCAAATGAGAAACTTGACGGTGAGGTGTTACGAGAATGGTTGAAGCTGGTTGTTGCTCCAACAGAGTTAGCTACATTTATCAAGGGTGAATATATGCCTCTGGAGAAGGATGAGCCTGTGTTTATCAAGAGGGCTGAGTAGATTATTCCGGAACAGAGTAAATAGTAATTGTCAGATGTATTAGTATGATACAAGGGACCAGGACAAGAAATACCTATTAAAAGGGCTCTATGGCAGCCTACCACCTCACTTGTATCTATTCCTATCATTCTGTATCATTAATGAAATGGTTCTGTTAAAAGTTCGGAACTACCTGCAATTAGACATTCTCTGTTGCATTGAAAAGTATTGAAGGAGATGACTTGTACACCAGGGAAGTTCCTCGTACAAGACTTTGTGGAACACTGGGAGCAATATTGGTGGGGAGTTTAAGGTCCTCATGCTTATGGAAAGCGGTGTTCTTTCTAATATTTTATCCTCTTTCTGTCCTTATCTACGATGAAGAATATGAGCTGATATTTGGCATTAAGTTTTCCAACTCGTAGATCTGAGTAAAATGGTACAAAATGTAAAGACATTTCAATCTTGCTGATCCATTTCTTGAAATTCTCTTGTATGCCTTTGGAATACTGTAAATGTCCTCTGACACCATGATGTGGGTCAAATATTTTGAGTTAGCAGGGTGTAAATTTGGGAAAAATTGTACATTGCTATCAGGTGTATTTATTGGTCAACTGTAATCAGAATAGTAATCTGATAAAATTTCTATATCTTCATCCCTGTTTTAGTCAGGGTAATTATTTACTGTTCACCATATTAGTTCCCAAGTGTTGAGAAATTTCTCTTCTGAAATCTGTAAGATTTGGGCCTTGTTAGATTGTAGACCATGGCAGGAATTTACATTTTTGGTTAAATTATGGTATTTCAAACATTAAGACAATGTCTGATCATATTGAAGAAGAATTATAGAGTGAACATTTTTTG

Ace file of the UniGene sp_v3.0_unigene1443

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell division protein ftsH, putative n=1 Tax=Ricinus communis RepID=B9SHY4_RICCO	-	-	0.0	67%
FL-Next	sp=ATP-dependent zinc metalloprotease FTSH 7, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	66%
Sma3	Cell division protein ftsH, putative	-	-	1.876e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	-
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	2.632e-22	-

Source	Gene names
Sma3	AAA; AT2G30950; AT4g23940; AT5G42270; At1g06430; At1g07510; At1g50250; At2g26140; At2g29080; At2g30950; At3g02450; At3g02450/F16B3.8; At3g16290; At3g47060; At3g56690; At4g23940; At5g15250; At5g42270; At5g53170; At5g58870; B1040D09.10-1; B1040D09.11; B1151

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	photosystem II repair	GO:0010206	Biological Process	-
Sma3	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-
Sma3	regulation of apoptotic process	GO:0042981	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Caspase Recruitment	IPR001315	-	-
Sma3		IPR001984	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Polysaccharide lyase 8, N-terminal alpha-helical	IPR012970	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR017909	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47060.1	ftsh7 FTSH protease 7 chr3:17332999-17336613 FORWARD LENGTH=802	72%
RefSeq	Arabidopsis thaliana	NP_566889.1	cell division protease ftsH-7 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002314122.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6H6R9

Fln msg: Overlapping hits, possible frame ERROR between 1914 and 1911,

Fln protein: MAAILPGDPTVSRCRHSAISPVLKSGAFRPKLGVSYCRASVLVSSRISGGFLTNFGPKDALVQRSIRESRFYGGVFRFRQLQITASGSCEQDKNSKTTSNENGDENRSRNANATSGNSNGGIEEAASKNSSSPASRPPQENQSRGWWKNRKWNWRETLVNHGREFGTLFLQLVVVLLLMRFLRPGIPMPGTESRVSTSYVSVPFSEFLSRINSNEVQKVEVDGVHFTFRLKPEDINPPENTVVLDRTAKRVLYTTTRPTDMKTPYEKMLENQVEFGAPDKRSGGFLNSAMVALLYIGLVAGLLNRFPLKFSQRSPGRMRNNKGRGSGSPRTGENGDIITFADVAGVDEAKEELEEIVEFLRNPDKYTRLGARPPRGILLVGLPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKKDAPSIIFIDEIDAVAKSRDGRVRVVSNDEREQTLNQLLTEMDGFESNSAVIVLGATNRADVLDPALRRPGRFDRIVMVEPPDRHGREAILKVHISRKKLPLATDVDMNAISSATTGFTGADLGNLVNEAALLAGRANKLEVSKADFIQAVERAIAGIxxxRSTLQLSEKAVVARHEAGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPGNEDRHLLFVDELRGRLVTLLGGRAAEEVVYSGRVSTGALDDIKRATDMAYKAVAEYGLNKSIGPISLATLSGGGLDESGGAMPWAKDQGHMVDLVQREVKILLQSALTMALLVIRSNPTVLEGLGAQLEANEKLDGEVLREWLKLVVAPTELATFIKGEYMPLEKDEPVFIKRAE*

Protein Length: 825

Fln nts: AGCTCATTAATTTTCTGCGATTTTTTAAAATCATACGTCGTGGCTTCAAATACTGTAAATTTTGATTTCTATAACGTCCAAGTGGACAAATGCAAGGATTTCTGGTTTTTACAGAATTCAGGTTCATTCTTTTTTCATAGATAA_-_ATGGCCGCAATACTGCCTGGAGACCCGACAGTTTCGCGATGTCGACATTCTGCCATTTCACCTGTATTAAAATCAGGAGCTTTTCGCCCCAAACTAGGAGTTTCCTATTGCCGAGCCAGCGTCTTGGTGTCGAGCAGAATTTCGGGCGGTTTTCTGACAAATTTTGGCCCTAAAGACGCTCTGGTGCAGCGGAGCATCAGAGAATCTAGGTTTTACGGCGGAGTTTTCAGGTTCCGGCAGCTGCAAATCACTGCAAGTGGCTCCTGCGAGCAAGACAAGAATTCCAAAACCACTTCTAACGAAAACGGCGACGAGAACAGGTCGAGGAATGCGAATGCCACTTCCGGCAATTCGAATGGCGGTATTGAAGAAGCTGCTAGTAAGAATTCGTCGTCCCCTGCATCGCGCCCACCGCAGGAAAACCAAAGCCGGGGTTGGTGGAAAAATCGGAAGTGGAATTGGAGAGAAACCCTTGTAAACCACGGCCGGGAATTTGGCACTCTGTTCTTGCAATTGGTAGTGGTTTTGTTATTGATGCGTTTTTTGCGGCCTGGTATTCCGATGCCTGGTACGGAATCTAGGGTTTCTACGAGCTACGTCAGTGTTCCTTTCAGCGAGTTCTTGAGCAGAATTAACAGTAACGAAGTTCAGAAAGTGGAGGTAGATGGAGTGCATTTTACGTTCCGTCTGAAACCAGAAGATATTAACCCTCCGGAAAATACAGTGGTTTTGGATCGCACTGCTAAGCGGGTATTGTATACCACAACGCGGCCGACCGATATGAAAACGCCTTATGAAAAGATGTTGGAAAACCAGGTGGAATTTGGCGCTCCTGATAAGCGGTCGGGTGGTTTTCTTAACTCTGCAATGGTTGCACTTCTCTATATTGGTCTAGTTGCTGGACTTCTCAACCGATTTCCGTTGAAATTTTCTCAGCGTTCACCTGGTCGTATGAGAAACAATAAAGGTCGAGGCTCTGGCAGCCCAAGAACCGGTGAAAACGGGGATATTATAACATTCGCCGATGTTGCAGGCGTGGATGAAGCTAAGGAAGAGCTTGAAGAAATTGTTGAATTTTTGCGGAATCCGGATAAATATACTCGACTTGGTGCTCGTCCTCCTCGAGGAATTCTCCTGGTAGGACTCCCTGGAACAGGAAAGACTCTTTTAGCAAAGGCTGTAGCTGGTGAAGCTGATGTTCCGTTTATAAGTTGTTCAGCTAGTGAGTTTGTGGAGCTGTATGTTGGAATGGGTGCATCTCGCGTGCGTGATCTCTTTGCGAGAGCCAAGAAGGATGCACCATCGATTATTTTCATTGACGAGATTGATGCTGTGGCCAAAAGTCGTGATGGTCGAGTCCGTGTTGTCAGCAATGACGAGCGTGAGCAAACCTTAAATCAATTGCTCACTGAGATGGATGGTTTTGAGAGCAACTCAGCAGTGATTGTGCTTGGAGCAACAAATAGAGCAGATGTTTTGGACCCTGCACTTCGCCGGCCTGGTCGATTTGATCGAATTGTTATGGTGGAGCCTCCTGATAGGCATGGGAGGGAAGCTATTTTAAAGGTTCATATTTCGAGAAAGAAACTACCCTTGGCTACAGATGTGGATATGAATGCTATTTCCTCTGCTACCACTGGCTTCACTGGGGCAGATCTAGGAAATCTCGTGAATGAAGCTGCGTTATTGGCTGGGCGAGCTAATAAACTGGAGGTATCAAAGGCAGATTTTATACAAGCTGTGGAGCGCGCCATTGCTGGTATAxxxxxxxxxCGTTCGACATTGCAACTCAGTGAGAAAGCAGTTGTGGCTCGACATGAAGCAGGCCATGCTGTTGTAGGTACAGCTGTTGCCAACCTTCTTCCTGGACAGCCTCGAGTAGAGAAACTGAGTATATTGCCTAGATCAGGAGGGGCTCTAGGATTTACTTACACACCACCTGGAAATGAAGATCGTCACTTGCTATTCGTTGATGAGTTACGTGGTCGCTTAGTGACTCTTCTAGGGGGACGTGCTGCAGAGGAAGTGGTATACTCAGGTCGTGTTTCCACTGGTGCACTTGATGATATAAAGCGTGCAACGGATATGGCATACAAAGCTGTCGCTGAATATGGTCTTAACAAGTCCATAGGCCCAATTTCATTGGCGACTTTGTCGGGTGGTGGTCTTGATGAGTCTGGAGGAGCAATGCCATGGGCCAAGGATCAGGGACATATGGTAGACCTTGTTCAAAGAGAGGTGAAAATTTTGCTACAATCGGCTTTGACAATGGCACTCCTTGTCATACGCTCTAATCCCACTGTACTTGAGGGCCTTGGTGCACAATTAGAAGCAAATGAGAAACTTGACGGTGAGGTGTTACGAGAATGGTTGAAGCTGGTTGTTGCTCCAACAGAGTTAGCTACATTTATCAAGGGTGAATATATGCCTCTGGAGAAGGATGAGCCTGTGTTTATCAAGAGGGCTGAGTAG___ATTATTCCGGAACAGAGTAAATAGTAATTGTCAGATGTATTAGTATGATACAAGGGACCAGGACAAGAAATACCTATTAAAAGGGCTCTATGGCAGCCTACCACCTCACTTGTATCTATTCCTATCATTCTGTATCATTAATGAAATGGTTCTGTTAAAAGTTCGGAACTACCTGCAATTAGACATTCTCTGTTGCATTGAAAAGTATTGAAGGAGATGACTTGTACACCAGGGAAGTTCCTCGTACAAGACTTTGTGGAACACTGGGAGCAATATTGGTGGGGAGTTTAAGGTCCTCATGCTTATGGAAAGCGGTGTTCTTTCTAATATTTTATCCTCTTTCTGTCCTTATCTACGATGAAGAATATGAGCTGATATTTGGCATTAAGTTTTCCAACTCGTAGATCTGAGTAAAATGGTACAAAATGTAAAGACATTTCAATCTTGCTGATCCATTTCTTGAAATTCTCTTGTATGCCTTTGGAATACTGTAAATGTCCTCTGACACCATGATGTGGGTCAAATATTTTGAGTTAGCAGGGTGTAAATTTGGGAAAAATTGTACATTGCTATCAGGTGTATTTATTGGTCAACTGTAATCAGAATAGTAATCTGATAAAATTTCTATATCTTCATCCCTGTTTTAGTCAGGGTAATTATTTACTGTTCACCATATTAGTTCCCAAGTGTTGAGAAATTTCTCTTCTGAAATCTGTAAGATTTGGGCCTTGTTAGATTGTAGACCATGGCAGGAATTTACATTTTTGGTTAAATTATGGTATTTCAAACATTAAGACAATGTCTGATCATATTGAAGAAGAATTATAGAGTGAACATTTTTTG

Fln Alignment:

Contig1443___EAASKNSSSPASRPPQENQSRGXXXXXXXXXXE---------TLVNHGREFGTXXXXXXXXXXXXXXXXPGIPMPGTESRVSTSYVSVPFSEFLSRINSNEVQKVEVDGVHFTFRLKPE----DINPPENTVVLDRTA------KRVLYTTTRPTDMKTPYEKMLENQVEFGAPDKRSGGFLNSAMVALLYIGLVAGLLNRFPLKFSQRSPGRMRNNKGRGSGSPRTGENGDIITFADVAGVDEAKEELEEIVEFLRNPDKYTRLGARPPRGILLVGLPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGMGASRVRDLFARAKKDAPSIIFIDEIDAVAKSRDGRVRVVSNDEREQTLNQLLTEMDGFESNSAVIVLGATNRADVLDPALRRPGRFDRIVMVEPPDRHGREAILKVHISRKKLPLATDVDMNAISSATTGFTGADLGNLVNEAALLAGRANKLEVSKADFIQAVERAIAGIExKRSTLQLSEKAVVARHEAGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPGNEDRHLLFVDEXXXXXXXXXXXXAAEEVVYSGRVSTGALDDIKRATDMAYKAVAEYGLNKSIGPISLATLSGGGLDESGGAMPWAKDQGHMVDLVQREVKILLQSALTMALLVIRSNPTVLEGLGAQLEANEKLDGEVLREWLKLVVAPTELATFIKGE
Q6H6R9______________DGASTSTTSAAATPPQPPSSKRGENKWRRKLIKGGGVGRWLWEPIVQGREMGFLLLQLGFAIFALRMLRPEIALPGSEPRPQTTYVSVPYSDFLASIDKNQVKKVEVDGVHIMFRLRPEVEARAMEQPQVQRGTDSVADNAGVPRRIVFTTTRPVDIKTPYEKMVENSVEFGSPDKRSGGLLNSALVALIYVVLIAVVLQRLPISFSQHSAGQLRNRKNSNSGGAKVSESTDIVTFADVAGVDEAKEELEEIVEFLRNPERYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAARVRDLFARAKKESPSIIFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDFICAVERSIAGIExKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSGRVSTGALDDIRRATDMAYKAVAEYGLNQRIGPISVATLSNGGLDESGGS-PWGRDQGHLVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAYLEENEKVEGEELQEWLKSVVAPKELTSFIRGK

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
679		12		87	0.992554
681	87			12	0.992554
682		12		87	0.992554
684		85		14	0.993533
686	14			85	0.993533
687		14		85	0.993533
688		14		85	0.993533
691			14	85	0.993533
695			85	14	0.993533
699		14	85		0.993533
700	14		85		0.993533
722	85			14	0.993533
741			14	85	0.993533
742	85			14	0.993533
746		85	14		0.993533
748		14	85		0.993533
749		14		85	0.993533
750			85	14	0.993533
752			14	85	0.993533
753		85	14		0.993533
756			14	85	0.993533
762			85	14	0.993533
763	85	14			0.993533
764	14		85		0.993533
772	14		85		0.993533
775			85	14	0.993533
776	85			14	0.993533
792			85	14	0.993533
793			14	85	0.993533
794			14	85	0.993533
795		85	14		0.993533
796	85		14		0.993533
1158	75	25			0.996473
1159			25	75	0.996473
1160	75	25			0.996473
1307	80		20		0.995493
1439	90			10	0.90298
2518		11		88	0.999952
2605	84		15		0.999986
2693		28		71	1.0
2726	87		12		0.992554
2731		10		90	0.90298
2751		10		90	0.90298
3067		7		92	0.999602
3194	43		56		1.0
3219		64		35	1.0
3245	90		10		0.90298
3297	20		80		0.995493
3298	20			80	0.995493
3300		80	20		0.995493
3301		80		20	0.995493
3387	16			83	0.994512
3388		16		83	0.994512
3389	83		16		0.994512
3412	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain