SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1411

Length: 3092 nt

UniGene Fasta

>sp_v3.0_unigene1411
GAGGGCGAGATCCAATTTCAGGTCTCCGATTCTTTGATTGTTAAATTCATCCATGTTCAATTCTTACGTCCGGATCCTGCGTGTATTTTATTCGATCCGGTGACCATTGGATTGCCCCGATTTTTTTAGTAATCTTCCAATTGAGGAAGGATATAATATAATGAGTATATGACAGTCGTAATAATTCTGTGAGTGAGGAAAGTTTTGATATTCTTCGGGAAAGTTTTGATCTTCTTCTTCGGTGGACAGAAATCCGGAAGCTGGTGGAGCTTGGTTATATGGTGAGATCATAACGGGGATTGATTTATTGAATAATAATAATAATAATTTGTTCTGGCAGTACAGAGAAACAATGGTGGAAGAAACCTCGTCGTCATCTCCTGGGGTAGTCGGCTTTTCGGTTCCACCGGGAAGACAGCGATTCCATATAGAACTGAGGACGGAGGAGACCACATTTGTTTCATGGAAGAAATTGATTAAAGATTCTCAGAAGGCCGTTCAGTCTCGTCCTGTTGAACCGCCCATCGGAGCTCACCCTGCTTTGGAGGCTCGGATTGCTCCAGAGGCCACAACTGGGGATTCTGTTGTGCAGACGGATCCGGTTTCAGCTCCTTCACATCGATTTAGTGCAGTTATTGAGAGGATCGAACGTTTGTACAAGGGAACTGGAAGTAGTGATGAAGAAGAGCTAGATAAAATTCCAGACGACGACCAGTATGATACTGAAGACTCATTTATAGATGATACAGAACTGGATGAGTACTTCTCAGTTGATGGGGGAAAGACAAAGCACACAGGATTTTTCATCAACAGAGGGAAATTAGAACACTCGAATGAGCCTGCTGCCTCTCCCGTGCTTGCTCCAAAGAAAAGGAGAAGGAAAGATACCAAGAAGATGCCAAATGATGAAGAGATTCCAAGCAAATTATCAAAGACGGGTGCTCTTCGAATAAAGGCAGCTGCAAGAAGTGGACCTTTGGTGGGTATGAATGCCACAAGCTCTGGTCAGGATATCACTTGTCTTGCTGTTGGTGAATATTCAGATGAAAAACCGTTGAAAAAGCAAGAATCAAAACCAGGAAATGTTCACGTTGGGCCCAGTTCATTAAAAGCTGAGAGATGCAAAGAAGTTCATTGTAAAACAGAGCCAACTGTCATAGGCATTGAGGTGTTTAATAAGGATGGGGCAATTCCAAATATTTCGATTGCAGGGTCTAAAGAAACCACTGTCAAGAAGGCAATCATGGCTGAACCTTCAGATGGTGATATGCAATATCACTCAGATAAACAAGCAACTCTTGGAACTGAATGCCATACAAGACAATTGATGAAGTGTGCAAATGATATGTCAACCTCCAATAAAAGTAGAGCCTTTGAGAAAGTTGAAGAAGGTGACGATTCAGTGGATGTGAATCCTGTTGTATACCAGATATCGACCTCCAAAAGCAAACCTTCACTACCGCTTCATAAGGAAGCTAGTCCTGCAAGGCCTAAATGCACTATTCTGGACAAAGCCTTCCAAGATTTGGAAAAGGGAGTTGCTGAATTGTGTCCACCTTCTACTGACATTCGAGAATCAGATCAGTCATGCCAAGTGGTGAAAAAGCGTATACCCCGTGATGTCAAGCAAAAGCTTGGCAAAGTAGCTAGGTTGGCGGCAAAACAAGGAAAAATCTCAAATGATGTAATTAATCGTCTTATGGGCATTTTAGGCCATGTAATGCGGCTTAAAACATTGAAGAGAAACTTGAAGGAAATGATTGCATCAGGAATCTCGGCCAAGCAGGAAAAAGAAGGTAGGCTTGAACACATAAAAAAGGAGGTGACTGAAATGGTCCAAATGCAAGTATCTTCTTTGCAAGCTCAGGAAAGCAGGCAAGAAGGTTCATTGGATGATTTACAAGCAGTGTCAACCTCTGTAGAAAAAGGAAAATTGAATGGATGCTACAAGTGGGATTGTGCAACTGAAGACCGACTTTGTGATCTCTATGATCAGTATGTTGAGGGAATGGATGAACACAAAGGCCCACAAATAAAGAAACTATACATAGAGCTTGCTGAACTTTGGCCAGAAGGTTGGATGGACAACAATGGCATAAAAAATGCAGTCTATAGAGCAAAGGAGCGAAAAAAGAAATTGAATAAGATTACTAATGGTGGTGGAGAGACGACTAAACGAAAGAAGGCTCCAGTAAAATTGAGTACCGATGGATGGAATGGAGATTTGAATACTGGAACTGTTTCTAATCCCAGCTGTGAAGATTCAACTCCTCGTGACAAACAAGCTATGGTGGAGCAAGTTCATAATGAATCTTTAAATAGAGGTAATATGCTGCAATACAGGATTGCAGATCCAAAGTCTTCATCTGTTATTGACAGAAAACAGAAGTATTTTGAAAAAGGTGAGAATAAGGGTTCAGATTGGGAAATTGAATGGAATAAATGTGTAGGAATCCCATCGAAAAAGAAAAAAAGTAAACCAAAAACAGATTTAGGTATAGAAAATACATATACAGGGCATATGAAAGCGTGTTCCTTTGAAGAGAAGGAAACGAACAAGCTGGACCAAGAAGGACTGCACGGGATGTCAGCTGACAGGAATGGAAGCATACAAATCAAAGGACTTCCTGCATCTGAAGTAGTTAGGATTGATTAGAAGTTACTACATAGGCTATATTAAATTGTTCACTTTTTATGTGTAATTCATTTATATTATGTTCTGTATGCATCTCTTTGGCTCTCTGTACGTGCATTTTTATGGGTTCATTTAATGTATGATTAGTCTTTCCTGCTCCATTCTTTCTTTTAAGATATTGTAACGATATTAAGCTACACTTTCACCATGGGTCAAAGAACTCACATTAGTTAAGAAGATGGAAGCACTTCTTCGTCTAGTGATTGATTTGGTGGTCCAGTGTATATTCTTGCTTCTATAGCCCAAAACAAATTTCACTTTTTCGGCCATTATAAATGTTTGGAGATGAATGAAGACATTAACACTGTTGGTATGGTCGATATCTTCTTATTTCCCTGGATTATGGGAGCAAAATAATGATTGTAATTATATTTAGATCAGATTATATCACGAAAGC

Ace file of the UniGene sp_v3.0_unigene1411

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	wound-responsive protein-like protein [Arabidopsis thaliana] gb\|AEE30125.1\| wound-responsive protein-like protein [Arabidopsis thaliana]	-	-	0.0	38%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	45%

Source	Gene names
Sma3	B1065E10.32; GSVIVT00015448001; OJ1212_B02.2; Os01g0883200; Os05g0422600; OsI_20017; OsJ_18595; Ot01g02950; PHYPADRAFT_167021; PHYPADRAFT_171726; POPTRDRAFT_871076;

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SXI6

Fln msg:

Fln protein: MVEETSSSSPGVVGFSVPPGRQRFHIELRTEETTFVSWKKLIKDSQKAVQSRPVEPPIGAHPALEARIAPEATTGDSVVQTDPVSAPSHRFSAVIERIERLYKGTGSSDEEELDKIPDDDQYDTEDSFIDDTELDEYFSVDGGKTKHTGFFINRGKLEHSNEPAASPVLAPKKRRRKDTKKMPNDEEIPSKLSKTGALRIKAAARSGPLVGMNATSSGQDITCLAVGEYSDEKPLKKQESKPGNVHVGPSSLKAERCKEVHCKTEPTVIGIEVFNKDGAIPNISIAGSKETTVKKAIMAEPSDGDMQYHSDKQATLGTECHTRQLMKCANDMSTSNKSRAFEKVEEGDDSVDVNPVVYQISTSKSKPSLPLHKEASPARPKCTILDKAFQDLEKGVAELCPPSTDIRESDQSCQVVKKRIPRDVKQKLGKVARLAAKQGKISNDVINRLMGILGHVMRLKTLKRNLKEMIASGISAKQEKEGRLEHIKKEVTEMVQMQVSSLQAQESRQEGSLDDLQAVSTSVEKGKLNGCYKWDCATEDRLCDLYDQYVEGMDEHKGPQIKKLYIELAELWPEGWMDNNGIKNAVYRAKERKKKLNKITNGGGETTKRKKAPVKLSTDGWNGDLNTGTVSNPSCEDSTPRDKQAMVEQVHNESLNRGNMLQYRIADPKSSSVIDRKQKYFEKGENKGSDWEIEWNKCVGIPSKKKKSKPKTDLGIENTYTGHMKACSFEEKETNKLDQEGLHGMSADRNGSIQIKGLPASEVVRID*

Protein Length: 769

Fln nts: GAGGGCGAGATCCAATTTCAGGTCTCCGATTCTTTGATTGTTAAATTCATCCATGTTCAATTCTTACGTCCGGATCCTGCGTGTATTTTATTCGATCCGGTGACCATTGGATTGCCCCGATTTTTTTAGTAATCTTCCAATTGAGGAAGGATATAATATAATGAGTATATGACAGTCGTAATAATTCTGTGAGTGAGGAAAGTTTTGATATTCTTCGGGAAAGTTTTGATCTTCTTCTTCGGTGGACAGAAATCCGGAAGCTGGTGGAGCTTGGTTATATGGTGAGATCATAACGGGGATTGATTTATTGAATAATAATAATAATAATTTGTTCTGGCAGTACAGAGAAACA_-_ATGGTGGAAGAAACCTCGTCGTCATCTCCTGGGGTAGTCGGCTTTTCGGTTCCACCGGGAAGACAGCGATTCCATATAGAACTGAGGACGGAGGAGACCACATTTGTTTCATGGAAGAAATTGATTAAAGATTCTCAGAAGGCCGTTCAGTCTCGTCCTGTTGAACCGCCCATCGGAGCTCACCCTGCTTTGGAGGCTCGGATTGCTCCAGAGGCCACAACTGGGGATTCTGTTGTGCAGACGGATCCGGTTTCAGCTCCTTCACATCGATTTAGTGCAGTTATTGAGAGGATCGAACGTTTGTACAAGGGAACTGGAAGTAGTGATGAAGAAGAGCTAGATAAAATTCCAGACGACGACCAGTATGATACTGAAGACTCATTTATAGATGATACAGAACTGGATGAGTACTTCTCAGTTGATGGGGGAAAGACAAAGCACACAGGATTTTTCATCAACAGAGGGAAATTAGAACACTCGAATGAGCCTGCTGCCTCTCCCGTGCTTGCTCCAAAGAAAAGGAGAAGGAAAGATACCAAGAAGATGCCAAATGATGAAGAGATTCCAAGCAAATTATCAAAGACGGGTGCTCTTCGAATAAAGGCAGCTGCAAGAAGTGGACCTTTGGTGGGTATGAATGCCACAAGCTCTGGTCAGGATATCACTTGTCTTGCTGTTGGTGAATATTCAGATGAAAAACCGTTGAAAAAGCAAGAATCAAAACCAGGAAATGTTCACGTTGGGCCCAGTTCATTAAAAGCTGAGAGATGCAAAGAAGTTCATTGTAAAACAGAGCCAACTGTCATAGGCATTGAGGTGTTTAATAAGGATGGGGCAATTCCAAATATTTCGATTGCAGGGTCTAAAGAAACCACTGTCAAGAAGGCAATCATGGCTGAACCTTCAGATGGTGATATGCAATATCACTCAGATAAACAAGCAACTCTTGGAACTGAATGCCATACAAGACAATTGATGAAGTGTGCAAATGATATGTCAACCTCCAATAAAAGTAGAGCCTTTGAGAAAGTTGAAGAAGGTGACGATTCAGTGGATGTGAATCCTGTTGTATACCAGATATCGACCTCCAAAAGCAAACCTTCACTACCGCTTCATAAGGAAGCTAGTCCTGCAAGGCCTAAATGCACTATTCTGGACAAAGCCTTCCAAGATTTGGAAAAGGGAGTTGCTGAATTGTGTCCACCTTCTACTGACATTCGAGAATCAGATCAGTCATGCCAAGTGGTGAAAAAGCGTATACCCCGTGATGTCAAGCAAAAGCTTGGCAAAGTAGCTAGGTTGGCGGCAAAACAAGGAAAAATCTCAAATGATGTAATTAATCGTCTTATGGGCATTTTAGGCCATGTAATGCGGCTTAAAACATTGAAGAGAAACTTGAAGGAAATGATTGCATCAGGAATCTCGGCCAAGCAGGAAAAAGAAGGTAGGCTTGAACACATAAAAAAGGAGGTGACTGAAATGGTCCAAATGCAAGTATCTTCTTTGCAAGCTCAGGAAAGCAGGCAAGAAGGTTCATTGGATGATTTACAAGCAGTGTCAACCTCTGTAGAAAAAGGAAAATTGAATGGATGCTACAAGTGGGATTGTGCAACTGAAGACCGACTTTGTGATCTCTATGATCAGTATGTTGAGGGAATGGATGAACACAAAGGCCCACAAATAAAGAAACTATACATAGAGCTTGCTGAACTTTGGCCAGAAGGTTGGATGGACAACAATGGCATAAAAAATGCAGTCTATAGAGCAAAGGAGCGAAAAAAGAAATTGAATAAGATTACTAATGGTGGTGGAGAGACGACTAAACGAAAGAAGGCTCCAGTAAAATTGAGTACCGATGGATGGAATGGAGATTTGAATACTGGAACTGTTTCTAATCCCAGCTGTGAAGATTCAACTCCTCGTGACAAACAAGCTATGGTGGAGCAAGTTCATAATGAATCTTTAAATAGAGGTAATATGCTGCAATACAGGATTGCAGATCCAAAGTCTTCATCTGTTATTGACAGAAAACAGAAGTATTTTGAAAAAGGTGAGAATAAGGGTTCAGATTGGGAAATTGAATGGAATAAATGTGTAGGAATCCCATCGAAAAAGAAAAAAAGTAAACCAAAAACAGATTTAGGTATAGAAAATACATATACAGGGCATATGAAAGCGTGTTCCTTTGAAGAGAAGGAAACGAACAAGCTGGACCAAGAAGGACTGCACGGGATGTCAGCTGACAGGAATGGAAGCATACAAATCAAAGGACTTCCTGCATCTGAAGTAGTTAGGATTGATTAG___AAGTTACTACATAGGCTATATTAAATTGTTCACTTTTTATGTGTAATTCATTTATATTATGTTCTGTATGCATCTCTTTGGCTCTCTGTACGTGCATTTTTATGGGTTCATTTAATGTATGATTAGTCTTTCCTGCTCCATTCTTTCTTTTAAGATATTGTAACGATATTAAGCTACACTTTCACCATGGGTCAAAGAACTCACATTAGTTAAGAAGATGGAAGCACTTCTTCGTCTAGTGATTGATTTGGTGGTCCAGTGTATATTCTTGCTTCTATAGCCCAAAACAAATTTCACTTTTTCGGCCATTATAAATGTTTGGAGATGAATGAAGACATTAACACTGTTGGTATGGTCGATATCTTCTTATTTCCCTGGATTATGGGAGCAAAATAATGATTGTAATTATATTTAGATCAGATTATATCACGAAAGC

Fln Alignment:

Contig1411___RQRFHIELRTEETTFVSWKKLIKDSQ-KAVQSRPVEPPIGAHPALEARIAPEATTGDSVVQTDPVSAPSHRFSAVIERIERLYKGTGSSDEEELDKIPDDDQYDTEDSFIDDTELDEYFSVDGGKTKHTGFFINRGKLEHSNEPAASPVLAPKKRRRKDTKKMPNDEEIPSKLSKTGALRIKAAARSGPLVGMNATSSGQDIT---CLAVGEYSDEKPLKKQESKPGNVHVGPSSLKAERCKEVHCKTEPTVIGIEVFNKDGAIPNIS--IAGSKETTVKKAIMAEPSDGDMQYHSDKQATLGTECHTRQLMKCANDMSTSNKSRAFEKVEEGDDSVDVNPVVYQISTSKSKPSLPLHKEASPAR---PKCTILDKAFQDLEKGVAELCPPSTDIRESDQSCQ--VVKKRIPRDVKQKLGKVARLA-AKQGKISNDVINRLMGILGHVMRLKTLKRNLKEMIASGISAKQEKEGRLEHIKKEVTEMVQMQVSSLQAQESRQEGSLDDLQAVSTSVEK-GKLNGCYKWDCATEDRLCDLYDQYVEGMDEHKGPQIKKLYIELAELWPEGWMDNNGIKNAVYRAKERKKKLNKITNG-----GGETTKRKKAPVKLSTDGWNGDL------NTGTVSNPSCEDSTPRDK
A9SXI6______________RQRFFVELKDEETTVVSWKKLVSDAEGKLVSARVSDAPAGANPALEARIAPEKGAGSVTGNDDPLPQVPNRFSSVIERIERLYKG-GDSDDDGAEDTPDEDQYDTDDPFIDDEELNEYFMVEEAKTKHTGFFINRGALEKISVPSPSPAVQPKKRRRRESKKDKKDEKEVKRRMKG---RIMQGSRQFPSHSHNFAGGETQVSNEHTLNKAQSSDPEEISSDSDAFRQGSAGPSRVSYKQEKLDFADVDNNGGVVERLLETTAMLNTESVFGGGRNIQIKSEYRYGSSFEEKKW---KQAAR----EPKGVMK----VSESLKMKMIQQSGKEDGAKDSDGGAGHAVAGYTKSLSPGPKEPSPGRRGWPKGTVMERAIQDLIKMVALLCPPSPEGEEQEALSQPGAKAKRLPREVKTRLAKVARLAQAKQGKVPDELVERLHGILGHIMRPNTLKRNLKEMVEHGLSAKQEKEGRLLDIKREVTEMVRNQVTKFKNAEVR-EGSSDDFQAGPSTVEKAGSSAEKYKWDHAIEDLLCNLYDQYLEGMDEHKGPQIRKLYFELAELWPEGWMDNNGIKAAVLRAKERQKRLNKLNKGPRKRKAGSSSDALRAEDELRY-GSGGSLINYTSQNSGHSSLKRSDDSTPDDE

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
175	25		75		0.996473
277	80	20			0.995493
347		20	80		0.995493
349	80			20	0.995493
350	80			20	0.995493
381		75		25	0.996473
474			33	66	0.997452
475			66	33	0.997452
1696		71	28		1.0
1802	14		85		0.993533
1803		14	85		0.993533
1804	14	85			0.993533
2144	66	33			0.997452
2434	22		77		0.999999
2555		71		28	1.0
2589		14	85		0.993533
2870	54		45		1.0
2877		45		54	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
311	328	AAT AAT AAT AAT AAT AAT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain