SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1368

Length: 1771 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1368

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF248 multi-domain protein	-	-	1.0e-09	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	ATRAD3, putative	-	-	8.826e-13	-

Source	Gene names
Sma3	At3g05390; At3g27230; At5g40830; GSVIVT00003400001; GSVIVT00014460001; GSVIVT00022763001; GSVIVT00026914001; GSVIVT00032827001; OSJNBa0027P08.5; Os04g0444700; Os06g0474300; Os08g0113400; OsI_16044; OsI_22961; OsI_27582; OsJ_14934; P0427G12.2; P0498H04.32;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pancreatic hormone-like	IPR001955	-	0.0	-
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002305225.1	predicted protein [Populus trichocarpa]	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPA4

Fln msg:

Fln protein: MEPTCRRRIRSKVLVLLLLVCSNLVTLLVFSGPNNWSGSHRGVGLLDLAQSDSLRLNFNELLWKLNTTQHDLLSTESELHTVKADLQTSNRISENLISELAHLTDFLKASFRGEGNAQAETDGGDPWGQWTEKNREQLPQELIEIVAGQKLPLGFNRAFNTDTVYIPIGHPCILLKDDLAKYMSYERGGTCPDDDNLAQQLMLRGCEPLPRRRCRKPIPEGYQEPHPFPESMWTTPPDTSILWTPYNCKSYGCLIDRKNRKDLIVDCKDCFDLQFREKYRWLNATSNDLNFAIDEVLGMKKGTIRIGLDIGGGTATFAVRMRERNVTIMTTSMNFDGPFNNFIASRGVVPMFVTISQRLPFFDSTLDLVHSMHVLSNWIPITMLEFVLFDIYRVLRPGGLFWLDHFFCLEPQLGELYVPLLERIGFNKLKWSIGRKMDRGIRFKEMYISALLEKPLSPRTSRRL*

Protein Length: 466

Fln nts: GGACGCTAAGAAAGAA_-_ATGGAACCCACGTGCCGCAGGAGGATCCGCTCCAAAGTACTGGTGCTTCTGTTGCTCGTCTGCTCCAATTTGGTAACACTACTCGTCTTCTCCGGCCCAAACAACTGGTCCGGATCCCACAGAGGGGTTGGCCTCCTGGACCTTGCCCAATCGGATTCCTTGAGACTGAACTTCAATGAACTTCTCTGGAAGCTCAACACCACACAGCACGATCTCCTCTCGACCGAATCGGAGCTCCACACCGTGAAGGCCGACCTGCAGACCTCCAACCGGATCTCGGAAAATCTCATATCGGAGCTCGCCCACCTCACGGATTTCCTCAAAGCGTCGTTCCGAGGCGAAGGCAACGCGCAGGCGGAGACGGACGGCGGGGACCCGTGGGGTCAGTGGACGGAAAAGAACAGAGAGCAGCTGCCGCAGGAGCTGATTGAGATCGTTGCGGGGCAGAAGCTCCCGTTGGGCTTCAACCGCGCCTTCAATACGGACACCGTGTATATTCCGATCGGGCATCCGTGTATCCTTTTGAAGGATGATCTGGCGAAATACATGAGCTACGAACGTGGGGGTACTTGCCCGGACGACGATAATCTCGCCCAGCAACTCATGCTCCGGGGATGCGAACCTCTTCCCCGCAGGCGTTGTAGAAAACCCATCCCTGAAGGCTACCAGGAGCCACACCCATTCCCAGAGAGCATGTGGACTACACCTCCAGACACCAGCATTTTGTGGACTCCATACAACTGCAAGAGTTATGGCTGTCTCATAGATCGCAAGAATAGAAAGGATCTCATTGTGGACTGTAAAGATTGTTTCGATCTGCAGTTCCGTGAGAAGTACAGATGGCTGAATGCTACCAGCAACGATTTGAACTTCGCCATAGACGAAGTGTTGGGGATGAAGAAAGGAACTATTCGCATCGGCCTGGACATCGGCGGAGGAACAGCAACCTTCGCGGTGAGAATGCGCGAGAGAAATGTGACGATAATGACCACTTCCATGAATTTTGACGGGCCCTTCAACAATTTCATAGCCTCTAGGGGAGTGGTGCCCATGTTCGTCACAATTTCTCAGCGCCTGCCCTTCTTTGACAGCACGCTCGACCTCGTTCATTCAATGCACGTCCTCAGCAACTGGATACCGATCACGATGCTGGAATTTGTACTGTTCGACATCTACAGGGTCCTCCGCCCTGGTGGACTGTTCTGGCTCGACCATTTCTTCTGTCTGGAGCCTCAGCTCGGGGAACTGTATGTCCCCTTGCTGGAAAGGATTGGATTTAACAAGCTCAAGTGGTCTATTGGGCGTAAGATGGACAGAGGGATCCGATTCAAGGAAATGTATATTTCGGCCCTATTGGAAAAACCGCTCTCTCCCAGGACGAGCAGACGTCTTTAA___TTTTCCTTTTCATTAAGCCCATGTTTCAAGCTTTCCTAAATTGATTACACTTCAGATGTAATAAAGGCTGAATATTAGTTTGCAGAATAGGAGGAGGAGAAGAGAACAGAGCAGGGAAAAAAATTCTGAAAAATGGTGTAAAAGAATGGAAGGAATCTGCAGAGCATATGAATCATGAATCACAGATTCATAATAATCCTCAGTTAGAAATGATTCCAGTCGTTGGAAGTGCTGGCTGAAACATGGATCAGATTTTATTTTTTACGTTTTGCTAACGCTAATGTAATGAAGTAATATTTAAGCCTAGATTGTTTGCAGGTTTAAACAGTAAATAGAATGACTTTGATGATTTACCGTTGC

Fln Alignment:

Contig1368___NELLWKLNTTQHDLLSTESELHTVKADLQTSNRISENLISELAHLTDFLKASFRGEGNAQAETDGGDPWGQWTEKNREQLPQELIEIVAGQKLPLGFNRAFNTDTVYIPIGHPCILLKDDLAKYMSYERGGTCPDDDNLAQQLMLRGCEPLPRRRCRKPIPEGYQEPHPFPESMWTTPPDTSILWTPYNCKSYGCLIDRKNRKDLIVDCKDCFDLQFREKYRWLNATSNDLNFAIDEVLGMKKGTIRIGLDIGGGTATFAVRMRERNVTIMTTSMNFDGPFNNFIASRGVVPMFVTISQRLPFFDSTLDLVHSMHVLSNWIPITMLEFVLFDIYRVLRPGGLFWLDHFFCLEPQLGELYVPLLERIGFNKLKWSIGRKMDRGIRFKEMYISALLEK
B8LPA4______________NDLITELTQTQRELLS-------IKTELKSSKQVSENLAAELTELIQFLRNPKSSNGG-----NADDPWLQWGEPNRVSLPKELKDFTAAKKLPLGRNPSFGSDTIYPPVGHACAVFKEDLNKYMDYKPGHRCPEDEILAQKLLLRGCEPLPRRRCHPATPSNYTEPFPFPESMWRTPPDSSVVWTAYSCKNYSCLIQRKYLK-VFDDCKDCFDLQGREKTRWLNGVGSDIDYSIDEVLKIKRHTIRIGLDIGGGTGTFAVRMRERNVTIITTSMNFNGPFNNFIASRGVVPMYISVSHRLPFFDNTLDIVHSMHVLSNWIPTVLLEFILYDINRILRPGGVFWLDRFFCIEDQL-KIYVPMIENVGFNKLKWSIGRKLDRGPALKEMYISALLEK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1154	16	83			0.994512
1155		83		16	0.994512
1247		88		11	0.923564
1402	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain