SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1353

Length: 1720 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1353

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA ligase isoform 1 [Triticum aestivum]	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	65%

Source	Gene names
Sma3	AT.I.24-9; At1g07910; GSVIVT00024483001; OSJNBa0049I08.10; Os07g0191700; OsI_25224; OsJ_23409; PHYPADRAFT_125536; POPTRDRAFT_256671; RCOM_1399320; RCOM_1399970; SDM1_4t00018; SDM1_4t00020; VITISV_002853;

Source	GOs	Term	Type	Identity
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	RNA ligase (ATP) activity	GO:0003972	Molecular Function	-
Sma3	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity	GO:0004113	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	polynucleotide 5'-hydroxyl-kinase activity	GO:0051731	Molecular Function	-
Sma3	tRNA splicing, via endonucleolytic cleavage and ligation	GO:0006388	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G07910.1	ATRNL, RNL, AtRLG1 RNAligase chr1:2446712-2454386 FORWARD LENGTH=1104	59%
RefSeq	Arabidopsis thaliana	NP_001154320.1	RNA ligase [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002323444.1	predicted protein, partial [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7SKU0

Fln msg: your sequence is shorter than subject: 443 - 1029

Fln protein: EEELVPNDEKLSSTVDTHVDKVLKAQGIIVFFPGIPGCAKSALCRELVNAPGGLGDDRPMRSLMGDLIKGKYWQKVLDERKKKPYEITLADKNAPNEEVWKQIEDMSRSTRAIAVPVVPNSEGTDTNPFALDALAVFMFRVLQRVNHPGSLDKNSKNAGYVLLMFYNLYEGKSRSEFETELRERFGLLVKMPLLKSDRDPLPDSIKGILDEGLSLYNLHTNKHGKLDSAEGSYAKEWSRWEQRLREILFANADYLTAIQVPFEHAVKHVLDDLRAIAKGDYEVVATEKRKLGTIVFAAVCLVPDETKALLDKISDLDSRAKMFLEENNVKSSLKSTHVTLAHKRSHGVTAVASFGVFRGQQVPVEFTAILFSDKLAALEAHLGCIGDEKISSKNEWPHLTIWTGAGATPKEANTLPQLVSEGRAIRIDFKEPFTLMGTVNFL*

Protein Length: 444

Fln nts: AGAAGAAGAACTTGTCCCTAATGATGAGAAGCTGTCTTCAACTGTGGATACACATGTAGATAAAGTCTTGAAAGCCCAGGGAATCATAGTATTCTTTCCTGGTATACCTGGATGTGCAAAGTCTGCTCTCTGTAGAGAACTTGTCAATGCTCCTGGTGGCCTTGGAGATGATCGGCCCATGCGTAGCTTAATGGGTGACCTTATTAAAGGAAAGTACTGGCAGAAGGTACTTGATGAGAGGAAAAAGAAGCCATATGAAATAACTCTTGCTGACAAAAATGCACCAAACGAAGAAGTATGGAAGCAGATTGAAGATATGAGTAGGAGCACTAGGGCAATAGCTGTACCAGTGGTTCCCAATTCTGAAGGCACGGATACAAATCCTTTTGCTCTTGATGCTTTGGCAGTATTCATGTTTCGTGTTCTTCAGCGAGTCAACCACCCGGGTAGTCTGGATAAAAACTCGAAGAATGCTGGCTATGTTCTGCTTATGTTTTACAATCTCTACGAGGGAAAGAGTAGGAGTGAATTTGAGACAGAACTGCGTGAGCGATTTGGCTTGCTTGTTAAAATGCCTTTGTTGAAATCTGACAGGGATCCTTTGCCTGATTCAATTAAAGGTATCTTGGATGAAGGATTGAGTTTATACAATCTTCACACGAACAAGCATGGAAAGTTGGACAGTGCTGAGGGTTCCTATGCAAAAGAGTGGTCTAGGTGGGAGCAGCGACTCAGAGAAATATTATTTGCGAATGCAGATTATCTCACTGCGATACAGGTCCCATTTGAACATGCTGTGAAGCATGTGTTGGACGATCTGCGAGCTATTGCGAAAGGAGACTATGAAGTGGTTGCAACTGAGAAACGTAAGCTTGGGACAATTGTTTTTGCTGCAGTTTGTTTGGTCCCAGATGAAACTAAAGCATTGCTTGACAAGATATCTGATCTTGATTCGCGTGCTAAGATGTTTCTTGAGGAAAATAATGTTAAAAGCTCTCTTAAGAGTACCCATGTGACACTTGCTCACAAGAGGTCTCATGGGGTCACTGCCGTTGCTAGTTTTGGTGTTTTCCGTGGACAGCAAGTCCCTGTTGAATTCACTGCAATCCTGTTTTCAGATAAGCTTGCTGCGCTGGAAGCTCATTTGGGTTGCATTGGAGATGAAAAGATATCTTCAAAGAATGAGTGGCCTCATTTGACGATCTGGACAGGAGCTGGAGCTACTCCAAAAGAAGCAAACACATTACCCCAACTGGTTTCAGAAGGTCGTGCAATTCGCATTGATTTCAAAGAACCATTTACATTGATGGGAACTGTTAATTTCTTGTGA___ACAATGGGATTGATTTTTTTTGAAGGAGAGTTATCTTCTAGTTTCAGTGAGAATAAATGAGCGATTGCATTTATTTTTTTCAAAAAGAAAGACCTCCTAGTGAAAATTTCATTAGGAGGAATAAGCGTTGGAGCAGGGGCATCTGTTATTTTTCTGTTTTCATTAAAACGATGATTCATGCGAAGATTTTGTAATATAGGTATATTTTTTATAACAAGAAAGGCTTGCCCCGATGTGAAGTTGACAGCTTTGCACGGGAATCTTTACTGGTCTTTCCACAATGTCAAAAGAAAAAAAAGAAAAAAAAGTGATTTGTTCGTGTGCTATACTTTTCCTTAGAAGTTGGCAGGGTGTATGATTCGAATTCTTTACATAAGATTATTTGTAACT

Fln Alignment:

Contig1353___EEELVPNDEKLSSTVDTHVDKVLKAQGIIVFFPGIPGCAKSALCRELVNAPGGLGDDRPMRSLMGDLIKGKYWQKVLDERKKKPYEITLADKNAPNEEVWKQIEDMSRSTRAIAVPVVPNSEGTDTNPFALDALAVFMFRVLQRVNHPGSLDKNSKNAGYVLLMFYNLYEGKSRSEFETELRERFGLLVKMPLLKSDRDPLPDSIKGILDEGLSLYNLHTNKHGKLDSAEGSYAKEWSRWEQRLREILFANADYLTAIQVPFEHAVKHVLDDLRAIAKGDYEVVATEKRKLGTIVFAAVCLVPDETKALLDKISDLDSRAKMFLEENNVKSSLKSTHVTLAHKRSHGVTAVASFGVFRGQQVPVEFTAILFSDKLAALEAHLGCIGDEKISSKNEWPHLTIWTGAGATPKEANTLPQLVSEGRAIRIDFKEPFTLMGTVNF
D7SKU0______________EREVAP-----SSPSPSVKDTVAKDEGLIVFFPGIPGCAKSALCKEILSAPGGFGDDRPVHSLMGDLIKGRYWPKVAEERRRKPCSIILADKNAPNEEVWRQIEDMCRSTRASAVPVVPDSEGTDSNPFSLDALAVFMFRVLQRVNHPGNLDKASPNAGYVLLMFYHLYEGKSRKEFESELIERFGSLVKMPLLKSDRSTMPDSVKNCLEEGINLYRLHTNRHGRLESTKGTYANEWSKWEKQLRDILFDNAEYLTSIQVPFESSVRQVLEQLKSIAKGDYPTPGTEKRKFGTIVFAAVSLPVTEIQSLLANLAEKNPKVEAFFKDKHLENSLRNAHVTLAHKRSHGVTAVANYGLFLNRQVPVDFTALLFSDKMAALEAYPGSVDGERITSKNQWPHVTLWTGAGVAPKEANMLPELISEGTATRIDISPPITISGTLEF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1239	88		11		0.923564
1257	11		88		0.923564
1277		11		88	0.923564
1300	12			87	0.992554
1384	66		33		0.997452
1470		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain