SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1236

Length: 1237 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1236

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Splicing factor 1/branch point binding protein (RRM superfamily) (ISS) [Ostreococcus tauri] emb\|CAL55634.1\| Splicing factor 1/branch point binding protein (RRM superfamily) (ISS) [Ostreococcus tauri]	-	-	0.0001	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: Distance to subject end: 91 aas, your sequence is shorter than subject: 412 - 970

Fln protein: MVEKLLVPVEEGSNELKRAQLLELAKIRGIAKIYICGFCGQEGHVLAGCPVRKKSLDKVSSQGTKVDITNDHDLCFELGTGKLAASMGRTGSGFPRQSIQPQGPTGNYMSSLDQAGGLEHPHNGNAQIGPEVMRVSTEKRGSEVPIQSSQPIGFTDSYMAWLAGGLEHPESVNPGIVSGKVFVEKSEVSVEKSVSGLPRQSTEPLGLTDNYMTWLSGGMERPEKVNTGVGPEIRKVSIEKSGSGLPRQSTQSLGLTDNYMSWLTGGLQHPESGKDGRAPEINKVSLEKSGSAIPRQSTQPLGLRDNYWSWLTGGFEHTEKGSAGIGPDISKGDSAHISWNPSTRPVSSSPYNLYSNNNGSGMPHHSVNPLQGGTFNSLPATSYRAYDLYEIPLCSAESSSGMRGPPKSQPVL

Protein Length: 413

Fln nts: ATGGTTGAAAAATTGCTTGTGCCTGTAGAAGAAGGAAGCAATGAACTCAAACGGGCTCAACTATTGGAATTGGCAAAAATTAGAGGCATTGCCAAAATTTATATTTGTGGATTTTGTGGGCAGGAAGGTCATGTGCTAGCCGGTTGTCCAGTGAGGAAGAAAAGTCTAGATAAGGTATCATCACAGGGCACGAAAGTGGATATTACTAATGACCATGATTTATGCTTTGAACTTGGAACAGGGAAATTGGCAGCATCAATGGGAAGGACTGGGTCTGGGTTTCCAAGACAGTCCATTCAACCACAGGGTCCCACAGGCAATTATATGTCATCTTTAGATCAAGCTGGAGGACTGGAACACCCACACAATGGAAATGCTCAAATAGGACCTGAGGTAATGAGGGTATCGACAGAAAAGAGGGGGTCTGAGGTTCCAATCCAGTCCTCTCAACCAATAGGTTTTACAGACAGTTATATGGCATGGTTAGCTGGAGGCTTGGAACACCCAGAAAGTGTAAATCCTGGAATAGTATCTGGGAAAGTGTTTGTAGAAAAGAGTGAAGTGTCTGTGGAAAAGAGTGTGTCTGGGCTTCCAAGACAGTCCACTGAGCCACTGGGGCTTACAGACAATTATATGACATGGTTATCTGGAGGCATGGAACGCCCAGAAAAGGTAAATACTGGAGTAGGACCTGAGATAAGGAAGGTATCTATTGAAAAGAGTGGGTCTGGGCTTCCAAGGCAGTCCACTCAATCACTGGGTCTTACAGACAATTATATGTCATGGTTAACTGGAGGCTTGCAACACCCAGAAAGTGGGAAAGATGGAAGAGCACCAGAGATAAATAAGGTTTCTTTGGAAAAGAGTGGATCTGCGATTCCAAGACAGTCCACTCAACCACTGGGTCTTAGAGACAATTATTGGTCATGGTTAACTGGAGGTTTCGAACACACAGAAAAGGGAAGTGCTGGAATAGGACCAGATATAAGCAAGGGTGATTCTGCACACATATCATGGAATCCTTCAACTAGGCCTGTATCATCATCTCCTTATAACCTTTATTCTAATAACAATGGTTCTGGCATGCCACACCATAGTGTCAATCCTTTGCAAGGAGGTACTTTCAACAGTCTCCCAGCTACTTCATATCGTGCATATGATCTATATGAGATACCACTCTGTTCAGCAGAATCATCTAGTGGCATGCGTGGGCCACCTAAATCTCAACCAGTGTTAG

Fln Alignment:

Contig1236___MVEKLLVPVEEGSNELKRAQLLELAKIRGIAKIYICGFCGQEGHVLAGCPVR--KKSLDKVSSQGTKVDITNDHDLCFELGTGKLAASMGRTGSGFPRQSIQPQGPTGNYMSSLDQAGGLEHPHNGNAQIGPEVMRVSTEKRGSEVPIQSSQPIGFTDSYMAWLAGGLEHPESVNPGIXXXXXXXXXXXXXXXXXXXXLPRQSTEPLGLTDNYMTWLSGGMERPEKVNTGVGPEIRKVSIEKSGSGLPRQSTQSLGLTDNYMSWLTGGLQHPESGKDGRAPEINK
B8LRH8______________MVEKLLVPLEEGSNALKQAQLKELAEIKKALTDNVCGKCGQEGHIRVNCPNQNQKKKQKKVSLQGATVDSTNEHDLCSELETGKSAVSMEKSGSGIPRQSIQPLGPTDNYMPWLAQAGGLEHPQNGNAGIGSEVMRVLMENRGSEIPIQSSQPLGFTDKYMTGLAGGLEQLENGNTGI-------VPGKVSSEKSVSGLPRQSVQSLGLTDNYMSWLTGGLQHPESGKDGLGHEIKKVSVEKSRYGLPRQSTQPPGPRDNYMSWLAGGLEHTENGSAGIGPDIRK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
739	66			33	1.0
779		33		66	1.0
807		83		16	0.994512
831			75	25	0.996473
834		75	25		0.996473
838	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain