SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1231

Length: 571 nt

UniGene Fasta

>sp_v3.0_unigene1231
ACGCTTCCTCCAAAAGCGAAAGGCGAGATTGAACAGCGTGGCTCCTTACAGCACGATGGAGACGGCGTCATTGCCTTCGAAAGCAGGGAAGGATTCCGATGAACATATCATACTGTCGTTGGGTTGTCCGTGACAGCAAATTTAAAATGTGGGTGGGTGCTATCGACTTCTAATGGCATCAACGGGAATTTTCGCCCTTTTAATCGAGGGAACGAACGCGTTTGCGTACTGCCGATGACGGCAACGCTTTTTCCGTACTGCGAACCTTGAGCAGAGTGTGACAGGTGAAGCTCACCGGGCATGGGCGGCAGAGGAAAGCGCAACTTGCAAGGTCAAGGGAGCTTCGTGGCAAGTGGCATGTAATTGCAGAGCAATTTCTTCATGTGCACCACAGCAGGCATGTGAATATTAATTTGTTCAAATCCTTTCCTGCATCGCCACTTGCATGCGAATGTACTATATTATATAATGTAATAAGTTTGATCTTTCTAAAATTAAAAGGTTTATCTAAAGTTATTTCAAATCCGTCGACAATGGATTCCGCGATTACTCTTATCATCGCAGGATGCAC

Ace file of the UniGene sp_v3.0_unigene1231

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	5.0e-12	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tify	IPR010399	-	0.0	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ13

Fln msg: your sequence is shorter than subject: 44 - 269

Fln protein: RFLQKRKARLNSVAPYSTMETASLPSKAGKDSDEHIILSLGCP*

Protein Length: 45

Fln nts: ACGCTTCCTCCAAAAGCGAAAGGCGAGATTGAACAGCGTGGCTCCTTACAGCACGATGGAGACGGCGTCATTGCCTTCGAAAGCAGGGAAGGATTCCGATGAACATATCATACTGTCGTTGGGTTGTCCGTGA___CAGCAAATTTAAAATGTGGGTGGGTGCTATCGACTTCTAATGGCATCAACGGGAATTTTCGCCCTTTTAATCGAGGGAACGAACGCGTTTGCGTACTGCCGATGACGGCAACGCTTTTTCCGTACTGCGAACCTTGAGCAGAGTGTGACAGGTGAAGCTCACCGGGCATGGGCGGCAGAGGAAAGCGCAACTTGCAAGGTCAAGGGAGCTTCGTGGCAAGTGGCATGTAATTGCAGAGCAATTTCTTCATGTGCACCACAGCAGGCATGTGAATATTAATTTGTTCAAATCCTTTCCTGCATCGCCACTTGCATGCGAATGTACTATATTATATAATGTAATAAGTTTGATCTTTCTAAAATTAAAAGGTTTATCTAAAGTTATTTCAAATCCGTCGACAATGGATTCCGCGATTACTCTTATCATCGCAGGATGCAC

Fln Alignment:

Contig1231___RFLQKRKARLNSVAPYSTMETASLPSKAGKDSDEHIILSLGCP
A9NZ13______________RFLQKRKERLNSVAPYSTMETETSPWKAGKDSDDQIILSLGCP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
249			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain