SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1185

Length: 1965 nt

UniGene Fasta

>sp_v3.0_unigene1185
ACAAGGTAAAATGGTTACCAAGTATTTCAAATAAATAGAGAAAAGCTTCTAGACGAGAGTTTCAGAATTAAGCGGAGGAACAAAGGTTTCAAACCTGGCCGGGGAGCCGGTTACAAGAAACCATCAAACCAAAGGAAAATCCAAAATCCATTGAAGCCAAACGACCGAAAGGAAAAGGGTAAATGGATTCCATGGATGCCATGCTAGCGCAGGTACAGGGGTTTTCAGCTACCAATGACGATCTCACACATCTTCATGGATTACTTAAGCAAAACGAGGAAGCTCTACGAGAGCAAGGCTCTAGACTGTCGTCCGTGTTAACTCAATTGGACCCTGCCAAGCACTCTCTTGGTTATCTATACGTCTTGGAAGCCTATTCATCTAGTTCAATTCCAAGAGAGCAGGCTGAGGGATTCATGCTGATTGCCTCCAAGTTTATCAATTCATGCTCAACAGAACAAATACGAATAGCTCCCGAAAAGTTCACTGTTCTCTGCAGGAGATTAAAGGAACAAGCTATGCAGTTGCAAGTGCCAATACAGGCAATCATTCCGCTGCGAACGGCTGTTCGGAAACTTCAACCTTCTCCCGAGCATTTGACTCCTCTGCACCCAGACCTTTTGCTTGTATGTTTGCTGGCTAAATGCTATAAAGCTGCATTAAGCATTTTGGAGGAGGACATTTTTGAGATTGATATACCAAAGGATTTCTTATTGTATTGCTATTATGGGGGAATGATTTTTATTGGATTGAAACGCTTCAACAAAGCCCTAGAATTTTTTCAGCATGCTATCACAGCCCCAGCGACAACTTTAACTGCAATAACTGTGGAAGCGTACAAAAAGTTTGTCCTAGTTTCTCTCATTCAGACTGGTCAGGTTCCAGCATTTCCAAAATACACACCTGCTGTTGTCCAAAGAAATTTGAAATCTTGCACTCAGCCCTACATTGATTTAGCAAACAACTACAGTAGTGGGAAAATTTCTGTATTGGAAGCTTGTGTCAACACGAACACAGAGAAGTTCAAGAATGATAGTAATTTGGGGTTAGTCAAGCAAGTTTTGTCATCTCTTTATAAACGGAATATTCAGAGGTTGACACAGACATATCTGACCCTCTCTCTTCAAGACATAGCAAGTACGGTACAGTTGGAGACTGCTAAGCAGGCTGAACTCCATGTTCTGCAGATGATTCAAGATGGTGAGATTTTTGCAACCATAAATCAGAAAGATGGCATGGTGAGCTTCAATGAGGATCCTGAACAGTACAAAACATGTCAGATGACTGAATATATAGATACTGCGATTCGGAGAATCATGGCACTATCAAAGAAGCTCACCACAGTAGATGAGCAGATTTCGTGTGATCATTCCTACCTGAGTAAGGTGGGGAGAGAGCGTTCAAGATTTGACATAGACGATTTTGATACTGTTCCCCAGAAGTTCACAAATATGTAACGTTGATGAGAATCATCTTCAAGACTTGCTTGTATTCATTGCTTTCTATGTGAATTGATAGTCTGTTAATAATAGTACTGTGGCCGAGTCCAGAAAGGATATCTCTTGGTATTATCACTTGACATGCCATCAAAAAAATCTCAAATTTCTCAACGTCTAGTCTTGATTTTGATTATGAATGTGACTTTTAGTTGTGACATTTGAGCACCTCGAGTGAACTACAAAGTTGCATGTTTCTCAGTAGTGTATAGGCAATGCTTTTGGGATTACTTATATTTTTAGATGTGTTATGCTAATTTTTGGCTTCAATTTCATAATATTGGTGTTGGCAGTCCACACCTTTTCCGGAAGTTATTACCTCCAGTTGAAAGTGGATGTAGTACCCTTAAAATTCTGTGAGCTAATGTATAAGGATCAAACAGACTGTTCACTTGTCTTGTGTGGAGCTTCGTCTCCATGAAGAAACCCTGAGCTCAAAAAAAAAAAAATTTCACTCCCTAGATAGAGT

Ace file of the UniGene sp_v3.0_unigene1185

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COP9 signalosome complex subunit 3 [Arabidopsis thaliana] sp\|Q8W575.2\|CSN3_ARATH RecName: Full=COP9 signalosome complex subunit 3; Short=Signalosome subunit 3; AltName: Full=Protein FUSCA 11 gb\|AAL58102.1\|AF395059_1 CSN complex subunit 3 [Arabidopsis thal	-	-	0.0	51%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	64%
Sma3	COP9 signalosome complex subunit 3	-	-	3.263e-13	-

Source	Gene names
Sma3	At5g14250; CSN3; F18O22.40; FUS11; GSVIVT00020552001; LC15; OJ1005_B05.20; Os08g0119000; OsI_27624; OsJ_25844; PHYPADRAFT_216017; POPTRDRAFT_752684; POPTRDRAFT_825500; RCOM_1678560; raiA;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	signalosome	GO:0008180	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	G2 phase of mitotic cell cycle	GO:0000085	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	cullin deneddylation	GO:0010388	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G14250.1	COP13, CSN3, FUS11 Proteasome component (PCI) domain protein chr5:4597970-4600561 FORWARD LENGTH=429	54%
RefSeq	Arabidopsis thaliana	NP_568296.1	COP9 signalosome complex subunit 3 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002300091.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9SV28

Fln msg:

Fln protein: MDSMDAMLAQVQGFSATNDDLTHLHGLLKQNEEALREQGSRLSSVLTQLDPAKHSLGYLYVLEAYSSSSIPREQAEGFMLIASKFINSCSTEQIRIAPEKFTVLCRRLKEQAMQLQVPIQAIIPLRTAVRKLQPSPEHLTPLHPDLLLVCLLAKCYKAALSILEEDIFEIDIPKDFLLYCYYGGMIFIGLKRFNKALEFFQHAITAPATTLTAITVEAYKKFVLVSLIQTGQVPAFPKYTPAVVQRNLKSCTQPYIDLANNYSSGKISVLEACVNTNTEKFKNDSNLGLVKQVLSSLYKRNIQRLTQTYLTLSLQDIASTVQLETAKQAELHVLQMIQDGEIFATINQKDGMVSFNEDPEQYKTCQMTEYIDTAIRRIMALSKKLTTVDEQISCDHSYLSKVGRERSRFDIDDFDTVPQKFTNM*

Protein Length: 426

Fln nts: ACAAGGTAAAATGGTTACCAAGTATTTCAAATAAATAGAGAAAAGCTTCTAGACGAGAGTTTCAGAATTAAGCGGAGGAACAAAGGTTTCAAACCTGGCCGGGGAGCCGGTTACAAGAAACCATCAAACCAAAGGAAAATCCAAAATCCATTGAAGCCAAACGACCGAAAGGAAAAGGGTAA_-_ATGGATTCCATGGATGCCATGCTAGCGCAGGTACAGGGGTTTTCAGCTACCAATGACGATCTCACACATCTTCATGGATTACTTAAGCAAAACGAGGAAGCTCTACGAGAGCAAGGCTCTAGACTGTCGTCCGTGTTAACTCAATTGGACCCTGCCAAGCACTCTCTTGGTTATCTATACGTCTTGGAAGCCTATTCATCTAGTTCAATTCCAAGAGAGCAGGCTGAGGGATTCATGCTGATTGCCTCCAAGTTTATCAATTCATGCTCAACAGAACAAATACGAATAGCTCCCGAAAAGTTCACTGTTCTCTGCAGGAGATTAAAGGAACAAGCTATGCAGTTGCAAGTGCCAATACAGGCAATCATTCCGCTGCGAACGGCTGTTCGGAAACTTCAACCTTCTCCCGAGCATTTGACTCCTCTGCACCCAGACCTTTTGCTTGTATGTTTGCTGGCTAAATGCTATAAAGCTGCATTAAGCATTTTGGAGGAGGACATTTTTGAGATTGATATACCAAAGGATTTCTTATTGTATTGCTATTATGGGGGAATGATTTTTATTGGATTGAAACGCTTCAACAAAGCCCTAGAATTTTTTCAGCATGCTATCACAGCCCCAGCGACAACTTTAACTGCAATAACTGTGGAAGCGTACAAAAAGTTTGTCCTAGTTTCTCTCATTCAGACTGGTCAGGTTCCAGCATTTCCAAAATACACACCTGCTGTTGTCCAAAGAAATTTGAAATCTTGCACTCAGCCCTACATTGATTTAGCAAACAACTACAGTAGTGGGAAAATTTCTGTATTGGAAGCTTGTGTCAACACGAACACAGAGAAGTTCAAGAATGATAGTAATTTGGGGTTAGTCAAGCAAGTTTTGTCATCTCTTTATAAACGGAATATTCAGAGGTTGACACAGACATATCTGACCCTCTCTCTTCAAGACATAGCAAGTACGGTACAGTTGGAGACTGCTAAGCAGGCTGAACTCCATGTTCTGCAGATGATTCAAGATGGTGAGATTTTTGCAACCATAAATCAGAAAGATGGCATGGTGAGCTTCAATGAGGATCCTGAACAGTACAAAACATGTCAGATGACTGAATATATAGATACTGCGATTCGGAGAATCATGGCACTATCAAAGAAGCTCACCACAGTAGATGAGCAGATTTCGTGTGATCATTCCTACCTGAGTAAGGTGGGGAGAGAGCGTTCAAGATTTGACATAGACGATTTTGATACTGTTCCCCAGAAGTTCACAAATATGTAA___CGTTGATGAGAATCATCTTCAAGACTTGCTTGTATTCATTGCTTTCTATGTGAATTGATAGTCTGTTAATAATAGTACTGTGGCCGAGTCCAGAAAGGATATCTCTTGGTATTATCACTTGACATGCCATCAAAAAAATCTCAAATTTCTCAACGTCTAGTCTTGATTTTGATTATGAATGTGACTTTTAGTTGTGACATTTGAGCACCTCGAGTGAACTACAAAGTTGCATGTTTCTCAGTAGTGTATAGGCAATGCTTTTGGGATTACTTATATTTTTAGATGTGTTATGCTAATTTTTGGCTTCAATTTCATAATATTGGTGTTGGCAGTCCACACCTTTTCCGGAAGTTATTACCTCCAGTTGAAAGTGGATGTAGTACCCTTAAAATTCTGTGAGCTAATGTATAAGGATCAAACAGACTGTTCACTTGTCTTGTGTGGAGCTTCGTCTCCATGAAGAAACCCTGAGCTCAAAAAAAAAAAAATTTCACTCCCTAGATAGAGT

Fln Alignment:

Contig1185___MDSMDAMLAQVQGFSATNDDLTHLHGLLKQNEEALREQGSRLSSVLTQLDPAKHSLGYLYVLEAYSSSSIPREQAEGFMLIASKFINSCSTEQIRIAPEKFTVLCRRLKEQAMQLQVPIQAIIPLRTAVRKLQPSPEXXXXXXXXXXXXXXXAKCYKAALSILEEDIFEID------IPKDFLLYCYYGGMIFIGLKRFNKALEFFQHXXXXXXXXXXXXXVEAYKKFVLVSLIQTGQVPAFPKYTPAVVQRNLKSCTQPYIDLANNYSSGKISVLEACVNTNTEKFKNDSNLGLVKQVLSSLYKRNIQRLTQTYLTLSLQDIASTVQLETAKQAELHVLQMIQDGEIFATINQKDGMVSFNEDPEQYKTCQMTEYIDTAIRRIMALSKKLTTVDEQISCDHSYLSKVGRERSRFDIDDFDTVPQK-FTNM
A9SV28______________MDALDQLVAQVQALSGSEQDVAHLSSLLKQADELLRTHALRLPFSLSSLHPTKHSLGYLYLLEAQSSGTLTREQSDSFLALASSFLTVCAPEQIRLAPDKFNSVCRRLRDQAMHLHEPMRAILPLQCAIRKLQPSSEYLTAIHADYLQMCLLSKCYKASLSILEDDIFEIDQKKTSLVPRDFLLYCYYGGMIYIGLKKFSKALEFFQHAITAPTTALNAITIAAFGKYVLVSLIQNGQVPPFPKYTPAVVLRNLKSCVQDYLDLANLYASRNIAEVKRCITQHEEVFKNDNNLGLAKQVIASLYKRNIQRLTQTYLTLSLQDIANTVQLDDEKDAELHILQMIKDGDIFAAINQKDGMVSFQEDPEQYNTCDMTQRLNNEIHHIVCLAKKLTWVDEQVSCDHAYLSKIGRDRPRYD-EDFDLVPQKIYTNI

SNPs (tot: 3)

Position	C %	T %	Probability
352	20	80	0.995493
557	13	86	1.0
803	88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain