SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1177

Length: 1439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene1177 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ischemia/reperfusion inducible protein n=3 Tax=Andropogoneae RepID=B6T950_MAIZE	-	-	0.0	54%
FL-Next	tr=Uncharacterized protein; Zea mays (Maize).	-	-	0.0	60%

Source	Gene names
Sma3	At5g60590; GSVIVT00024529001; LOC_Os03g10450; MICPUN_51618; OSTLU_6322; Os03g0201600; OsI_10418; OsJ_09812; Ot01g03610; PHYPADRAFT_119339; POPTRDRAFT_768259; RCOM_0154480; VITISV_024209;

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR004388	-	-
Sma3	YrdC-like domain	IPR006070	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	DHBP synthase RibB-like alpha/beta domain	IPR017945	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60590.2	DHBP synthase RibB-like alpha/beta domain chr5:24357066-24358443 FORWARD LENGTH=288	65%
RefSeq	Arabidopsis thaliana	NP_974970.1	DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002313460.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C0P2Q3

Fln msg:

Fln protein: MKVVSANTLSMNLLPQLSFRKFHASCNWAHHTRLLGLSFNQFPTEKLLSGRLELVSGSVKRFNSQYKKLTGLSVMGELGQEHATLGMMEMGSVLPATEFHVEKATKALEAGQVIAVPTDTLYGLACDACSPAAVQRIYEIKGRSMTSPLAICVADVSDVNRFAVTSHLPDGLLSSLLPGPVTLVLDRGKESILEKSLNPGVNTIGIRIPECDFIQIVARNFGSALALTSANQSGQPSTVCIQEFEQLWQHCAYIFDGGQLPVGRAGSTIIDLTTPKVYKILRRGSASKETREILDLFGFKEIN*

Protein Length: 305

Fln nts: AATGTATATCCACATTCTTGCTCTGTTATTTTTGTGGTGGGAGTAGGGTCGTTACACCTTTTTGAGCCATTTTGACTGTCAATATTTGGGTTGTCTCTGTGTGGTGGACATGTCACTTGGTGAATATTCGACACAGCGCGGAAAGTTGACCACCC_-_ATGAAGGTAGTGTCTGCGAACACCCTCTCCATGAACCTCCTACCACAGCTTTCTTTTCGTAAATTCCACGCTTCCTGCAATTGGGCACACCATACAAGACTTCTGGGGTTGAGTTTCAATCAATTCCCCACTGAGAAACTCCTCTCAGGCAGACTTGAACTGGTGAGCGGGTCAGTGAAGAGATTCAACTCCCAATACAAAAAGTTAACAGGGCTTTCAGTAATGGGGGAGCTTGGTCAAGAACATGCAACGTTAGGAATGATGGAGATGGGGTCAGTTCTGCCAGCAACTGAATTTCACGTAGAAAAAGCAACGAAGGCCCTTGAAGCTGGGCAAGTCATTGCTGTACCCACAGATACTCTGTATGGACTTGCTTGCGATGCTTGCTCTCCAGCAGCAGTCCAAAGGATATATGAAATCAAAGGACGCAGTATGACAAGCCCACTTGCAATCTGTGTTGCTGATGTGTCGGATGTTAATCGCTTTGCAGTGACCTCTCATTTACCGGATGGTCTACTTAGCAGTCTTCTTCCCGGACCTGTCACTTTAGTGCTAGACCGTGGTAAAGAAAGTATTCTTGAGAAGTCCCTCAACCCAGGAGTGAATACTATTGGAATCAGAATACCAGAATGTGACTTTATCCAGATAGTAGCTCGTAATTTTGGCAGTGCTCTTGCACTCACAAGCGCTAATCAAAGTGGACAACCAAGCACAGTTTGTATTCAAGAATTTGAGCAGCTGTGGCAACATTGTGCTTATATTTTTGATGGAGGTCAACTTCCAGTTGGACGTGCAGGCTCAACAATTATAGATCTAACCACACCCAAAGTCTATAAGATCCTAAGACGTGGAAGTGCTTCGAAGGAGACAAGAGAAATTCTTGATTTATTTGGTTTCAAAGAGATTAATTAA___GCATGAAAAGTAGGGCACGAGTGAATATGCTCTTTCTTTAGGGCTACATATGGGGTAAATTTTGTATAAGAGGAAGCAAAGTATTAACTAAACGGCCTTTTCCCAATTATAGTTACGATGTTTATTGTCCCTGTCTCTTGGGGCAAAGATTTTAGGTTTAGGGGAGGAAATAGGGCTAAAGACGATCTTAGTCTATTTAAAATTAGCTTAATCTAATTAAGCTGTTCTGAGATTGGTTATATTCCCGTTCTAAGCGCCTTCTGAAAATAATTGTACTAATTTAAGATCATACTTTGTTTAATCATTGTGGAGCATCGTATTAATGTAAGCTTCTTCTGGTTCAATATAGTGGTCAAAGTAAAAAGTATTCAG

Fln Alignment:

Contig1177___KRFNSQYKKLTGLSVMGELGQEHATLGMMEMGSVLPATEFHVEKATKALEAGQVIAVPTDTLYGLACDACSPAAVQRIYEIKGRSMTSPLAICVADVSDVNRFAVTSHXXXXXXXXXXXXXXXXXLDRGKESILEKSLNPGVNTIGIRIPECDFIQIVARNFGSALALTSANQSGQPSTVCIQEFEQLWQHCAYIFDGGQLPVGRAGSTIIDLTTPKVYKILRRGSASKETREILDLFGFKE
C0P2Q3______________RRLPSQHETKSQVSCSVRVSENTAHRIDATAENIFPAVKDHVLKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVSDISRFALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIARGTGSALALTSANLSGQPSSVCVKDFEGLWPHCSYVFDGGVLPSGRAGSTIVDLITPGVYKILRDGSSRKETAAVLGKFGFVE

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
238		40	60		1.0
243	60		40		1.0
245	40		60		1.0
282	33		66		1.0
356	28	71			1.0
425		10		90	0.90298
489		22	77		0.999999
490	22	77			0.999999
491		77		22	0.999999
573		11		88	0.923564
634		88	11		0.923564
762	14		85		0.993533
776	12	87			0.992554
780		75		25	1.0
795		87	12		0.992554
797		87	12		0.992554
802	87	12			0.992554
806		12	87		0.992554
808	14			85	0.993533
809			14	85	0.993533
810	85		14		0.993533
811	85			14	0.993533
820	85		14		0.993533
826	16		83		0.994512
829	83			16	0.994512
830		83		16	0.994512
843			20	80	0.995493
844			80	20	0.995493
1027		66		33	0.997452
1207	40	60			1.0
1296	66		33		0.997452
1302	33	66			0.997452
1319	33			66	0.997452
1334		33	66		0.997452
1335		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain