SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1174

Length: 2209 nt

UniGene Fasta

>sp_v3.0_unigene1174
CGAAGTGTTTGTCTATGCATTCGTGCACTTTCAAAGAAAGCCCGGTCAAAGCATTTAGATGTGCCTGATTTTGATATTGTCACTCATGGCTTATCCATGCCTACAGACATGGTGGATAGTATTCGAAAATACTTAGAGACGGTGACGTATGCCGTGTCCGGCAAAAGTGAATACAGCCCTGGTTCAGGCTCAAATGGACCATTGGGAAATAACAATGAACCATTCTTCACAGGATCATTTGAACTATCACCCGAGGACCCTGATGAAGCAGAAAGTAAGCTAAAATCACCAGATTTTGGAAGCCCAGGTTCTCTTTTAGAAGGAAATGCTGGTTTAAATTCAGACATTTATTCAACATCTCCAAGAAGCCCAAATTTTAAAAGTGAAGATTGGTCTTCCCAAAGTTCAGCAACGAGTGCTTCACCTATGAGGAATTCGCTTGCTGAACTCAACATTCCTTTGGCTCCAAAAGATATTGATGAGAAAAGTTCTAATGAAGAATGTAGCATCAGGCATACTTTCGTAACAGATGCCGGTAATGAATACACGGTGAAACCAGTCCCATCCAGCTCTAATGGACATGTCTCTGACAGCATTCACGAAGAGCTGATTAACACATCTCTTGTTTCTAATTCACCAGTTAATTCTTCTGCTCATAAAGGAGATAATGTTGATGTTGACAATGTGGACAAATACATGAACATAGGGCCTTTAAAAGATAAACATGTCAGTGAAAAATTTAATGACACTGGCACAAGCATGGTGGACATTGTTAATGAATTCACGGGGAACTCAGTACCTTGCATCTCTGATAAACATGCTAGTAACGGTGCTTGTGAGGAATGTGCGAATTCTTCCTCTGTGTCAGTCTGCCATGGTTTTGAGGAAGCAGGAAAAACTGATGTGGTGGTGGGTTGCCCCACAACTGTATCAGAATTAGATAGTTTGGATGTTGGCTCTAAAAATCCATTGAAATTAGGCTGTCTGAATGCTGACTGCACAGATATTTTACAAGTAGATAGTGTTGACATTGATCGTATAATTGTGTCGAATGTAAATGATGATGATTATTACATGAACAAACCAATGACAGGTAGTGTGGACATGAATTTTGTTAATCAGCAAAAGTCAGGTTTTGTGGATACCGACAGTGGTTACATGCCAGAAGGAGATAATTTTGACATGGCGACCGTAAATATGCCGAAAGCAGATAGTGTGGATATCAACTGTGCAAATATGCCGGAAGAAGATAGTGTGGTCAACTCTATGAATGGGTTAGAAGCAGATAGTGTTGATGTTGACTGCACAAATGTGCCAAAACCAGAGACTGTTGGTGTTCACGTTTCTCCAAATTCAAAGAAAGCATATGGTATCAAGCTTGGCCGGCCAAATTTGCCAGAGGCACATGGTCTAGAGGTTGGTATGTCAGATGTGACAAAAGGAGATAGCATGGATACTGATTCCCTGTATATCAGGCAATCTGAAACTGTAGATGAAGACCATGCATTGAACGCTGATGAATCTTTAAATCGAATTCTTCACTTGAAGGAAGATTCTGGCCCTGTTGACAATGAAGAAAATCAGTGTGAAATTGAAAAATAATCCCTAGAAAAGATGAATCAGTGGAAAAGCTGACAACTAGTAGACATAACAGGAGAAGTCTATGGATGCCATTTCTTGCTGGCAGCCTTGCAGTCCTTGGGACAGCGATCACAATAATGCAGGCCAGGATACCCAAAGATGTTGAGGTTAAGAAAGGTGATACACTGTCACAAATATCCAAACGAGTTGGCAAGTCAAGTTGGAAGGAGTTGGTTCTACTAAACCCTGAAATAAATAATCCTGATTTGATTTATCCCGGGGACAGGTTGAAATTGAAATGAGATATAGCTCAGAGTACCTATTTTATTGTTTGTATCTTACAGATTTTCTCTTTCTGAGAATCTCTTGCATTACACCTTGTATTTGTTAGTTCTATGCTAAATAGCTCCAACTGGCTAACAAAATTAATATGTGCACTGGGAAATTGTAGGTTGCCGAACCTATTCTCCCTTTATCGGGTTGTATTTCTTTCTATAATCTATGACCTGTTGGTTAAATTATTCTTGTAACGAATACGGAAAGCGATGTAGCTAAATTTTTCTTTCAGCTGGACATTCTTCAAATGCACTAAGAAACAATGATTTAAATGCCTTGTGCATTATAAGTT

Ace file of the UniGene sp_v3.0_unigene1174

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LysM domain-containing protein [Colwellia psychrerythraea 34H] gb\|AAZ24689.1\| LysM domain protein [Colwellia psychrerythraea 34H]	-	-	0.0001	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	Gene names
Sma3	GSVIVT00019239001; RCOM_1764760; VITISV_037916;

Source	InterPros	Term	Type	Identity
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002330447.1	predicted protein [Populus trichocarpa]	3.0e-13	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS30

Fln msg: Overlapping hits, possible frame ERROR between 1599 and 1596, your sequence is shorter than subject: 628 - 777

Fln protein: RSVCLCIRALSKKARSKHLDVPDFDIVTHGLSMPTDMVDSIRKYLETVTYAVSGKSEYSPGSGSNGPLGNNNEPFFTGSFELSPEDPDEAESKLKSPDFGSPGSLLEGNAGLNSDIYSTSPRSPNFKSEDWSSQSSATSASPMRNSLAELNIPLAPKDIDEKSSNEECSIRHTFVTDAGNEYTVKPVPSSSNGHVSDSIHEELINTSLVSNSPVNSSAHKGDNVDVDNVDKYMNIGPLKDKHVSEKFNDTGTSMVDIVNEFTGNSVPCISDKHASNGACEECANSSSVSVCHGFEEAGKTDVVVGCPTTVSELDSLDVGSKNPLKLGCLNADCTDILQVDSVDIDRIIVSNVNDDDYYMNKPMTGSVDMNFVNQQKSGFVDTDSGYMPEGDNFDMATVNMPKADSVDINCANMPEEDSVVNSMNGLEADSVDVDCTNVPKPETVGVHVSPNSKKAYGIKLGRPNLPEAHGLEVGMSDVTKGDSMDTDSLYIRQSETVDEDHALNADESLNRILHLKEDSGPVDNEENQCEIxxxIPRKDESVEKLTTSRHNRRSLWMPFLAGSLAVLGTAITIMQARIPKDVEVKKGDTLSQISKRVGKSSWKELVLLNPEINNPDLIYPGDRLKLK*

Protein Length: 629

Fln nts: CGAAGTGTTTGTCTATGCATTCGTGCACTTTCAAAGAAAGCCCGGTCAAAGCATTTAGATGTGCCTGATTTTGATATTGTCACTCATGGCTTATCCATGCCTACAGACATGGTGGATAGTATTCGAAAATACTTAGAGACGGTGACGTATGCCGTGTCCGGCAAAAGTGAATACAGCCCTGGTTCAGGCTCAAATGGACCATTGGGAAATAACAATGAACCATTCTTCACAGGATCATTTGAACTATCACCCGAGGACCCTGATGAAGCAGAAAGTAAGCTAAAATCACCAGATTTTGGAAGCCCAGGTTCTCTTTTAGAAGGAAATGCTGGTTTAAATTCAGACATTTATTCAACATCTCCAAGAAGCCCAAATTTTAAAAGTGAAGATTGGTCTTCCCAAAGTTCAGCAACGAGTGCTTCACCTATGAGGAATTCGCTTGCTGAACTCAACATTCCTTTGGCTCCAAAAGATATTGATGAGAAAAGTTCTAATGAAGAATGTAGCATCAGGCATACTTTCGTAACAGATGCCGGTAATGAATACACGGTGAAACCAGTCCCATCCAGCTCTAATGGACATGTCTCTGACAGCATTCACGAAGAGCTGATTAACACATCTCTTGTTTCTAATTCACCAGTTAATTCTTCTGCTCATAAAGGAGATAATGTTGATGTTGACAATGTGGACAAATACATGAACATAGGGCCTTTAAAAGATAAACATGTCAGTGAAAAATTTAATGACACTGGCACAAGCATGGTGGACATTGTTAATGAATTCACGGGGAACTCAGTACCTTGCATCTCTGATAAACATGCTAGTAACGGTGCTTGTGAGGAATGTGCGAATTCTTCCTCTGTGTCAGTCTGCCATGGTTTTGAGGAAGCAGGAAAAACTGATGTGGTGGTGGGTTGCCCCACAACTGTATCAGAATTAGATAGTTTGGATGTTGGCTCTAAAAATCCATTGAAATTAGGCTGTCTGAATGCTGACTGCACAGATATTTTACAAGTAGATAGTGTTGACATTGATCGTATAATTGTGTCGAATGTAAATGATGATGATTATTACATGAACAAACCAATGACAGGTAGTGTGGACATGAATTTTGTTAATCAGCAAAAGTCAGGTTTTGTGGATACCGACAGTGGTTACATGCCAGAAGGAGATAATTTTGACATGGCGACCGTAAATATGCCGAAAGCAGATAGTGTGGATATCAACTGTGCAAATATGCCGGAAGAAGATAGTGTGGTCAACTCTATGAATGGGTTAGAAGCAGATAGTGTTGATGTTGACTGCACAAATGTGCCAAAACCAGAGACTGTTGGTGTTCACGTTTCTCCAAATTCAAAGAAAGCATATGGTATCAAGCTTGGCCGGCCAAATTTGCCAGAGGCACATGGTCTAGAGGTTGGTATGTCAGATGTGACAAAAGGAGATAGCATGGATACTGATTCCCTGTATATCAGGCAATCTGAAACTGTAGATGAAGACCATGCATTGAACGCTGATGAATCTTTAAATCGAATTCTTCACTTGAAGGAAGATTCTGGCCCTGTTGACAATGAAGAAAATCAGTGTGAAATTxxxxxxxxxATCCCTAGAAAAGATGAATCAGTGGAAAAGCTGACAACTAGTAGACATAACAGGAGAAGTCTATGGATGCCATTTCTTGCTGGCAGCCTTGCAGTCCTTGGGACAGCGATCACAATAATGCAGGCCAGGATACCCAAAGATGTTGAGGTTAAGAAAGGTGATACACTGTCACAAATATCCAAACGAGTTGGCAAGTCAAGTTGGAAGGAGTTGGTTCTACTAAACCCTGAAATAAATAATCCTGATTTGATTTATCCCGGGGACAGGTTGAAATTGAAATGAGATATAGCTCAGAGTACCTATTTTATTGTTTGTATCTTACAGATTTTCTCTTTCTGAGAATCTCTTGCATTACACCTTGTATTTGTTAGTTCTATGCTAAATAGCTCCAACTGGCTAACAAAATTAATATGTGCACTGGGAAATTGTAGGTTGCCGAACCTATTCTCCCTTTATCGGGTTGTATTTCTTTCTATAATCTATGACCTGTTGGTTAAATTATTCTTGTAACGAATACGGAAAGCGATGTAGCTAAATTTTTCTTTCAGCTGGACATTCTTCAAATGCACTAAGAAACAATGATTTAAATGCCTTGTGCATTATAAGTT

Fln Alignment:

Contig1174___RSVCLCIRALSKKARSKHLDVPDFDIVTHGLSMPTDMVDSIRKYLETVTYAVSGKSEYXXXXXXXXXXXXXXXXFFTGSFELSPEDPDEAESKLKSPDFGSPGSLLEGNAGLNSDIYSTSPRSPNFKSEDWXXXXXXXXXXPMRNSLAELNIPLAPKDIDEKSSNEECSIRHTFVTDAGNEYTVKPVPSSSNGHVSDSIHEELINTSLVSNSPVNSSAHKGXXXXXXXXXKYMNIGPL----------------------KDKHVSEKFND----TGTSMVDIVNEFTGNSVPCISDKHASNGACEECANSSSVSVCHGFEEAGKTDVVVGCPTTVSELDSLDVGSKNPLKLGCLNADCTDILQVDSVDIDRIIVSNVNDDDYYMNKPMTGSVDMNFVNQQKSGFVDTDSGYMPEGDNFDMATVNMPKADSVDINCANMPEEDSVVNSMNGLEADSVDVDCTNVPKPETVGVHVSPNSKKAYGIKLGRPNLPEAHGLEVGMSDVTKGDSMDTDSLYIRQSETVDEDHALNADESLNRILHLKEDSGPVDNEENQCEIExIIPRKDESVEKLTTSRHNRRSLWMPFLAGSLAVLGTAITIMQ--ARIPKDVEVKKGDTLSQISKRVGKSSWKELVLLNPEINNPDLIYPGDRLKLK
B8LS30______________RRVCLCIRALSKKARSRHLDVPDFDVVTHGFFMPTDMVDSIRKYLEKTSYTVSGKSEYSPGPGLKGKLGNNNEPFFTGRLELSPEDPDEAESKLKSPDSGSPGSLLEGNAGLTTDIYSTSPRSPNFKSEDWSSQSSTTSASPIRNSLAELNIPLTPKNIDEKSSNEECRIMQTFIADAGNEYTVKPDPSSSNEHFSDSIHEELINTSVVSNSPVNSSAHKGENVDVEHVDKYENIGPLPVTNLTTQINDASALVLADLPLKDKHVNGNFSDSPKLTDTGMEDIVNEFMENSVLCISDR-----TCEERADPTSVSVCHGFEEAGKNDVVVGCPTTISELDRLDVGSKNPLKLGCVDADCTDTLQVDSVDIDRIIVSDVNDDDYYMNEPKTGSVDIDFVNQPKSDFVDTHSGDMPEADIFHMASANVPKIDSVDINCANVPEEDSVVNAMNRLEPDSVDVDITNVLKPETVDVHGCPNSKKADGIKLGRANSPEADGVEVDTSDVTKGDSMDTDYLYIRQSETPDADHALIADESINRLLQLEADSGHVHNEENQSEIExIIPRKDESVENMTTFKHNRIRLWMPFLAGGLAALGTMITIMQTSSRKPKDFEVKKGDTLSQISKRVGKSSWKELVQLNPEINNPDLIYPGDRLKLK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
766	20		80		0.995493
872	25			75	0.996473
878			66	33	0.997452
1258			80	20	0.995493
1260	20			80	0.995493
1262	80	20			0.995493
1265	20			80	0.995493
1364		16	83		0.994512
1414	66		33		1.0
1621	75		25		0.996473
1718	14	85			0.993533
1719	85	14			0.993533
1722	83			16	0.994512
1736		20		80	0.995493
1759	83	16			0.994512
1760	83		16		0.994512
1761	83			16	0.994512
1762		16	83		0.994512
1768	83			16	0.994512
1769		83	16		0.994512
1770	83		16		0.994512
1773	16		83		0.994512
1915			77	22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain