SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1154

Length: 1425 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1154

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin-responsive protein IAA33 [Arabidopsis thaliana] sp\|Q9FKM7.1\|IAA33_ARATH RecName: Full=Auxin-responsive protein IAA33; AltName: Full=Indoleacetic acid-induced protein 33 dbj\|BAB08779.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAT67088.1\| IA	-	-	1.0e-19	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57420.1	IAA33 indole-3-acetic acid inducible 33 chr5:23270024-23270959 FORWARD LENGTH=171	7.0e-25	60%
RefSeq	Arabidopsis thaliana	NP_200552.1	auxin-responsive protein IAA33 [Arabidopsis thaliana]	9.0e-25	60%
RefSeq	Populus trichocarpa	XP_002329637.1	predicted protein, partial [Populus trichocarpa]	2.0e-23	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSC0

Fln msg:

Fln protein: MMDLRTGIPADHGQQRQSWQVPGRPEEFFRSKISHCDESRSNQNANTNFYARILGAMPPTSPYKCNPVVMEGFQVDSSIRDSRLTHDGINRNPPPFLQSGLTLSSNHKNLSLSTHDANAQSKQMSLPEILQLAAGRNRAAEESKYSSNPEAFPAAAFVLFGYSEGAAPPITVVLEGRSICQRICLQDHADYDSFAQALRKMFEDIVLLPVGTHVGESINLANAVPGYVIAYEDIDGDLLLAGDLSWKDFVKAAKRIRILPAKNPRRQMIG*

Protein Length: 272

Fln nts: GAGGGCGGGCAGGGCATATCAGCAGGTTCCATTCGATTAATGCCATCCATTATTCGTTCGCTCTGGAAGCTTTTGCTGCCACTCTCCATCACAAC_-_ATGATGGACTTGCGCACTGGGATTCCAGCGGATCACGGCCAGCAGAGACAAAGCTGGCAGGTACCCGGGAGGCCTGAAGAGTTTTTCAGATCCAAAATCTCGCATTGCGACGAATCTCGCAGCAATCAGAACGCCAATACGAATTTCTACGCGAGAATCCTTGGAGCAATGCCGCCGACGAGCCCTTACAAATGCAATCCGGTGGTCATGGAAGGATTTCAGGTAGATTCTTCCATTCGGGATTCTCGATTAACCCATGACGGGATCAATCGTAACCCGCCTCCATTTTTGCAGTCCGGGCTAACCCTCAGTTCCAATCACAAAAATCTTTCGCTTTCCACGCACGATGCCAACGCTCAGTCGAAGCAGATGTCGTTGCCCGAGATCTTGCAGTTAGCGGCCGGCCGGAACCGAGCGGCGGAAGAATCGAAATATTCGAGCAATCCGGAGGCTTTTCCTGCTGCGGCTTTTGTTCTTTTTGGATATTCGGAAGGTGCGGCGCCTCCTATCACTGTGGTGCTTGAAGGCCGATCGATTTGCCAGAGGATTTGTCTGCAAGATCATGCAGACTACGATAGCTTTGCACAGGCACTCAGAAAAATGTTTGAAGATATTGTGCTCTTGCCCGTCGGTACCCATGTGGGAGAATCCATCAACTTAGCCAACGCTGTACCAGGCTATGTGATTGCTTATGAAGATATTGATGGCGATCTTCTTCTTGCCGGTGATTTATCATGGAAGGATTTTGTGAAAGCGGCAAAGAGAATTAGGATTTTGCCCGCTAAGAATCCGAGAAGGCAGATGATTGGATAA___AGTATACCAGAGCTATAATAAACAGAGGATTGGGTTGCGTACAATAGTATCCATACGCGAGTCCTGGGAATTTTCTTGTGGTTTTTGCCCTGTTTTTCGGTCTGGCCCTCTTGTCGTCAAAGCGCCTTGTGGATAAAGCCTGCAGAATGTTACGAAATGCCAGAGACTGTAAATATTCCGTTTGTACGAGTTGTGTGGCTTTTATAAAGTTAATACCAGCATTGCTCGGTTTCACAGCACAACAGTTTACTAGTTCAATACTACTAGGACTATATTGTGTGCCCTACCTAGTTCAACAGCACTGGGCTCATGTGTGTCAACATCACTGGGTTCATATGTGTGTCCTACTGCTTCGGACATATTGTAATTTCAAATAGATCTTTCTCCTTTATTATTATGTGTTCAGTTATGAAACCTGCTTATCTGAACTTATTCAGTTACTTATATGAACTTATTGAATAAAGAGACTAGCAAATGTTTTCTGAGTATTGGGCATTCAACTTTATTTTGTAAAATA

Fln Alignment:

Contig1154___MMDLRTGIPADHGQQRQSWQVPGRPEEFFRSKISHCDESRSNQNANTNFYARILGAMPPTSPYKCNPVVMEGFQVDSSIRDSRLTHDGINRNPPPFLQS--GLTLSSNHKNLSLSTHDANAQS---KQMSLPEILQLAAGRNRAAEESKYSSNPEAFPA-----AAFVLFGYSEGAAPPITVVLEGRSICQRICLQDHADYDSFAQALRKMFEDIVLLPVGTHVGESINLANAVPGYVIAYEXXXXXXXXXXXXSWKDFVKAAKRIRILPAKNPRRQMIG
A9NSC0______________MMDLRTGIPADHSQQRQSWQVAGR-EEFLRSKISHCDESRSNQNANTNFYARILGAMPPTNPYKCNPVLMEGYQVDSSIRDPRLTHDG-NRNLPPFLQSKDGPTLSSNHKNLSLSTHDASAQSFATKPMSLPEILQLA-GRKRAAEESKYTSNPEAFPSEAFPSAAFLLFGYSEGAAPPITVVLEGRSICQRICLQDHSNYDSFSQALRKMFEDMVILADGTHVGESINLANAVPGYVVAYEDIDGDLLLAGDLSWKDFVKAAKRIRILPAKNPRRQIIG

SNPs (tot: 3)

Position	C %	G %	T %	Probability
812		33	66	0.997452
1170	66	33		1.0
1379	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain