SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1136

Length: 3015 nt

UniGene Fasta

>sp_v3.0_unigene1136
CCACTGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGGATCAAAGTGTCATAGCTATAATAAAATAGAACAATAGGATTGATAGAGGATGCAGTAGGATTGATAGAGCGAGTGAATCGTGCCTCATCAATATATATTTCATCTGCTACGAGGCCGAGGTGGATACGCATCGCCTATACGAACAGCAATTCACAGAATGGCGCTGAGGGATTTGGTGACCGGAGGAGCAGCATGTGCCGTTCCTGGAGCCCCTTCGTCCTCTTCTAATCCTCTTGGGGCTCTCGCAGACTCTATCTTCGGATCCTCCTCGAAAACTCAGGAAAGATTAAATGAGCTTCCCGCATTAGCTGGATCAGGACCAAGTGGTACTTCAGAAATTAGAACCATTGGATCTTTGACTTCCCTTCCAGGATCAGAATATGAACAGGATCACTTTCAACGGTCGAATATTCAGGGTTCAGAGTTTTTGCATGGCTTCAAGCCTGTTGACCATGCTAGATATGAAGGTGCTTGGCATGAGTCCACAGGGATCCCACATCTCACTTCTGTGCACTATCAAACTGGAGAAGGCCATGATTATTATCCTGAGTTTGAACAAATTTATGACCAAGGCATTGCAAACATTCAAGCCCAACCTGACCTTGAGGGAGCTCCACAAAGGGTACTATCAGGCTTCCTCCGGTCTTTTGTGGACAGTAGCAGAGCAGAAATTCCTTTCCGACCAGCACAGCTTCCAGTTCTAGGTTTGTCAGAAGGTGACAAACGATGTATACGTGACCGTAGCAGCATTATGGCACGCCACTTTTTTGCTGATAAAAGTGAAGATTATATTAATGCACAGGTAAATGCACTTCTGCATTCTTTGGATATTGAAAATGATCTCAGGGCTTGGACTCCTACCGGTGGGAGATTCTCAGAGCTGGAAGAGTACTGGAATGAATCCCAGGGTGCTGGTTATAATTCCATGGTTAGAAACAATTTTGATACCTCTCATCCTTCTGACAAATGGGTCACAGAATATAGTCAAAGAAGCAATATATCTGGATCCTGGGCTGAAGAGTTTGAGCAAGATCATGGTGTTGAAGCTTGGGCAGGCCAGTTCAATCAGGAACAGTCTCAGATGGCATCTATGACAAATATGAGAAACATGAACATTTCAAATGCCGCAGCATTGGAGCAAACGCGTATGCTTGCCCATACATTGTCTCAAAATCAAGATCCAAAGTTTCAGAATTCAAAGTTCCTCCAGTTTGTATCTAAAATGAGTCGTGGAGAGTTGATCGTTGATGATAACCAGGTTAAACCTGCTGGTTCATCCTCGGCCAATGCATGGGCTGATGAATATCAGCATCAGCATGCAGGGGACATGAATCCTTGGGCTGCCGAGTTTACAGCCGGGGAGCATTCTCAACACGGGGATGCATGGGCGACTGAATTTGTACAAGAAAAGCAAGGAAAACATGAAACTGATGATCAATGGATAAATGAGTTTTCGAAGTTGCATATGCAAGACTGGGCAGATGAATTCACTGATCATATGTCTAAAGGCATTTTCGAGGATGGTTCAGCTGATACTTGGGCAGATTCTTATGAAAAGTTTTTAGAAGAGCAATTGAAAGGGGAGCATCAATTGCCAGCTTCATCAAAATTTGTCTATTCTTTTGCTGATCAGAACCCTTATGTTGGTCATGCTAATCCGCTTAAAGAAGGTCAGGAACTTTTTCGGAAAGGTCTATTAAGTGAAGCTGTGCTTGCTTTGGAAGCAGAAGTGTTAAAGAATCCTGACAATGCGGAAGGCTGGCGGCTGCTTGGTATTACACACGCAGAAAATGACGATGATCAGCAGGCCATTGCTTCAATGGTACGTGCAAGAGATGCTGATCCAACTAACTTGGAAGTATTGCTAGCACTTGGTGTTAGCCATACTAATGAATTGGAGCAAGCAGCAGCACTCAAATACTTAAGGGGTTGGCTACAACATCATCAAAAATATGGTGTACTTGTTCCACAAGATCAGGCAGAAAACTTGAGTCATGTTGAGGTGGCCAGGCTATTCAATGAAGCTGCTCAAATGTCCCCAGAGGATGGTGATGTGCATACAGTTCTAGGTGTTTTGTATAATTTATCTCGAGAGTATGACAAAGCAATTCGTGCTTTCCAGACTGCACTTAAGCTGAAGCCTCGCGATTACTCTCTATGGAATAAACTGGGTGCTACACAGGCAAACAGTGCTCAAAGTGCTGATGCAATCTATGCATATCAACAGGCCCTTGACTTGAAGCCTAACTATGTACGTGCATGGGCAAATATGGGTATCAGCTTTGCTAACCAGGGACGCTATGAAGAGTCTATTTGTTACTATGTAAGGGCATTAGTGATGAACCCAAAGGCTGAAAACGCTTGGCAGTATTTACGGATTTCTCTCAGCTGTGCTGCACGGACAGAATTGTTGGAGGCCTGTGATATGCGGGATCTTGATACTCTCCAGAAAGAGTTTCCACTGTGAGGTCATGAGTTAGTGATGCTGATGCCTTCAGAAGTTTGTTCACTGCTTGATGAACAGTACAATTTCCTCCTGATAAGATGCTTTTTATTTTCAAAAAATAAAATCCATATTGACTAGCAACAACTTACCCATAAAGATTCTACTGCAGAAAACTTGTTAAATTGGGTATATCTTTTACTTTGAGTCATATATGGTTGTTGTATTATATCTGATTTCTATCAACCAGCAAATTGCAGCGGTCACAGGTAACTGATTTGTAAAATAGATGCTTGTCTATTCATAAAATTAAGAGGTAAATGACCAATTATGTTGAACGGGTCTCAGGCCTCAGCATATTGAAATTATTTGCAAATTTCAACGTGCAGAACCACCTGCAACAAATGTAGGTTGGAAATAAACTAGCAAAAAGATGTAGAAGTTGAAGTATATTGTTAGTAGAAAATAATTATTGTTACATGTTGAAAGCTGTTTGATATTGTTGGGGGGAATTCATTTGTCCGTTACATA

Ace file of the UniGene sp_v3.0_unigene1136

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxisomal targeting signal 1 receptor [Nicotiana tabacum]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Putative peroxisomal targeting signal 1 receptor	-	-	6.349e-09	-

Source	Gene names
Sma3	At5g56290; GSVIVT00003346001; GSVIVT00003348001; GSVIVT00003351001; MICPUCDRAFT_45395; OJ1118_A06.13-1; OJ1118_A06.13-2; Os08g0500100; OsI_29764; OsJ_27829; PEX5; PHYPADRAFT_190651; POPTRDRAFT_708236; POPTRDRAFT_837219; RCOM_0364320; RCOM_1977610; VITISV_

Source	GOs	Term	Type	Identity
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Hemolysin-type calcium-binding conserved site	IPR018511	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56290.1	PEX5, ATPEX5 peroxin 5 chr5:22786655-22791972 FORWARD LENGTH=728	61%
RefSeq	Arabidopsis thaliana	NP_200440.1	peroxin 5 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002330566.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADE4

Fln msg: your sequence is longer than subject: 770 - 533

Fln protein: MALRDLVTGGAACAVPGAPSSSSNPLGALADSIFGSSSKTQERLNELPALAGSGPSGTSEIRTIGSLTSLPGSEYEQDHFQRSNIQGSEFLHGFKPVDHARYEGAWHESTGIPHLTSVHYQTGEGHDYYPEFEQIYDQGIANIQAQPDLEGAPQRVLSGFLRSFVDSSRAEIPFRPAQLPVLGLSEGDKRCIRDRSSIMARHFFADKSEDYINAQVNALLHSLDIENDLRAWTPTGGRFSELEEYWNESQGAGYNSMVRNNFDTSHPSDKWVTEYSQRSNISGSWAEEFEQDHGVEAWAGQFNQEQSQMASMTNMRNMNISNAAALEQTRMLAHTLSQNQDPKFQNSKFLQFVSKMSRGELIVDDNQVKPAGSSSANAWADEYQHQHAGDMNPWAAEFTAGEHSQHGDAWATEFVQEKQGKHETDDQWINEFSKLHMQDWADEFTDHMSKGIFEDGSADTWADSYEKFLEEQLKGEHQLPASSKFVYSFADQNPYVGHANPLKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGITHAENDDDQQAIASMVRARDADPTNLEVLLALGVSHTNELEQAAALKYLRGWLQHHQKYGVLVPQDQAENLSHVEVARLFNEAAQMSPEDGDVHTVLGVLYNLSREYDKAIRAFQTALKLKPRDYSLWNKLGATQANSAQSADAIYAYQQALDLKPNYVRAWANMGISFANQGRYEESICYYVRALVMNPKAENAWQYLRISLSCAARTELLEACDMRDLDTLQKEFPL*

Protein Length: 771

Fln nts: CCACTGCTTAAGCAGTGGTATCAACGCAGAGTACACGGGGGATCAAAGTGTCATAGCTATAATAAAATAGAACAATAGGATTGATAGAGGATGCAGTAGGATTGATAGAGCGAGTGAATCGTGCCTCATCAATATATATTTCATCTGCTACGAGGCCGAGGTGGATACGCATCGCCTATACGAACAGCAATTCACAGA_-_ATGGCGCTGAGGGATTTGGTGACCGGAGGAGCAGCATGTGCCGTTCCTGGAGCCCCTTCGTCCTCTTCTAATCCTCTTGGGGCTCTCGCAGACTCTATCTTCGGATCCTCCTCGAAAACTCAGGAAAGATTAAATGAGCTTCCCGCATTAGCTGGATCAGGACCAAGTGGTACTTCAGAAATTAGAACCATTGGATCTTTGACTTCCCTTCCAGGATCAGAATATGAACAGGATCACTTTCAACGGTCGAATATTCAGGGTTCAGAGTTTTTGCATGGCTTCAAGCCTGTTGACCATGCTAGATATGAAGGTGCTTGGCATGAGTCCACAGGGATCCCACATCTCACTTCTGTGCACTATCAAACTGGAGAAGGCCATGATTATTATCCTGAGTTTGAACAAATTTATGACCAAGGCATTGCAAACATTCAAGCCCAACCTGACCTTGAGGGAGCTCCACAAAGGGTACTATCAGGCTTCCTCCGGTCTTTTGTGGACAGTAGCAGAGCAGAAATTCCTTTCCGACCAGCACAGCTTCCAGTTCTAGGTTTGTCAGAAGGTGACAAACGATGTATACGTGACCGTAGCAGCATTATGGCACGCCACTTTTTTGCTGATAAAAGTGAAGATTATATTAATGCACAGGTAAATGCACTTCTGCATTCTTTGGATATTGAAAATGATCTCAGGGCTTGGACTCCTACCGGTGGGAGATTCTCAGAGCTGGAAGAGTACTGGAATGAATCCCAGGGTGCTGGTTATAATTCCATGGTTAGAAACAATTTTGATACCTCTCATCCTTCTGACAAATGGGTCACAGAATATAGTCAAAGAAGCAATATATCTGGATCCTGGGCTGAAGAGTTTGAGCAAGATCATGGTGTTGAAGCTTGGGCAGGCCAGTTCAATCAGGAACAGTCTCAGATGGCATCTATGACAAATATGAGAAACATGAACATTTCAAATGCCGCAGCATTGGAGCAAACGCGTATGCTTGCCCATACATTGTCTCAAAATCAAGATCCAAAGTTTCAGAATTCAAAGTTCCTCCAGTTTGTATCTAAAATGAGTCGTGGAGAGTTGATCGTTGATGATAACCAGGTTAAACCTGCTGGTTCATCCTCGGCCAATGCATGGGCTGATGAATATCAGCATCAGCATGCAGGGGACATGAATCCTTGGGCTGCCGAGTTTACAGCCGGGGAGCATTCTCAACACGGGGATGCATGGGCGACTGAATTTGTACAAGAAAAGCAAGGAAAACATGAAACTGATGATCAATGGATAAATGAGTTTTCGAAGTTGCATATGCAAGACTGGGCAGATGAATTCACTGATCATATGTCTAAAGGCATTTTCGAGGATGGTTCAGCTGATACTTGGGCAGATTCTTATGAAAAGTTTTTAGAAGAGCAATTGAAAGGGGAGCATCAATTGCCAGCTTCATCAAAATTTGTCTATTCTTTTGCTGATCAGAACCCTTATGTTGGTCATGCTAATCCGCTTAAAGAAGGTCAGGAACTTTTTCGGAAAGGTCTATTAAGTGAAGCTGTGCTTGCTTTGGAAGCAGAAGTGTTAAAGAATCCTGACAATGCGGAAGGCTGGCGGCTGCTTGGTATTACACACGCAGAAAATGACGATGATCAGCAGGCCATTGCTTCAATGGTACGTGCAAGAGATGCTGATCCAACTAACTTGGAAGTATTGCTAGCACTTGGTGTTAGCCATACTAATGAATTGGAGCAAGCAGCAGCACTCAAATACTTAAGGGGTTGGCTACAACATCATCAAAAATATGGTGTACTTGTTCCACAAGATCAGGCAGAAAACTTGAGTCATGTTGAGGTGGCCAGGCTATTCAATGAAGCTGCTCAAATGTCCCCAGAGGATGGTGATGTGCATACAGTTCTAGGTGTTTTGTATAATTTATCTCGAGAGTATGACAAAGCAATTCGTGCTTTCCAGACTGCACTTAAGCTGAAGCCTCGCGATTACTCTCTATGGAATAAACTGGGTGCTACACAGGCAAACAGTGCTCAAAGTGCTGATGCAATCTATGCATATCAACAGGCCCTTGACTTGAAGCCTAACTATGTACGTGCATGGGCAAATATGGGTATCAGCTTTGCTAACCAGGGACGCTATGAAGAGTCTATTTGTTACTATGTAAGGGCATTAGTGATGAACCCAAAGGCTGAAAACGCTTGGCAGTATTTACGGATTTCTCTCAGCTGTGCTGCACGGACAGAATTGTTGGAGGCCTGTGATATGCGGGATCTTGATACTCTCCAGAAAGAGTTTCCACTGTGA___GGTCATGAGTTAGTGATGCTGATGCCTTCAGAAGTTTGTTCACTGCTTGATGAACAGTACAATTTCCTCCTGATAAGATGCTTTTTATTTTCAAAAAATAAAATCCATATTGACTAGCAACAACTTACCCATAAAGATTCTACTGCAGAAAACTTGTTAAATTGGGTATATCTTTTACTTTGAGTCATATATGGTTGTTGTATTATATCTGATTTCTATCAACCAGCAAATTGCAGCGGTCACAGGTAACTGATTTGTAAAATAGATGCTTGTCTATTCATAAAATTAAGAGGTAAATGACCAATTATGTTGAACGGGTCTCAGGCCTCAGCATATTGAAATTATTTGCAAATTTCAACGTGCAGAACCACCTGCAACAAATGTAGGTTGGAAATAAACTAGCAAAAAGATGTAGAAGTTGAAGTATATTGTTAGTAGAAAATAATTATTGTTACATGTTGAAAGCTGTTTGATATTGTTGGGGGGAATTCATTTGTCCGTTACATA

Fln Alignment:

Contig1136___RLFNEAAQMSPEDGDVHTVLGVLYNLSREYDKAIRAFQTALKLKPRDYS-LWNKLGATQANSAQS----ADAIYAYQQALDLKPNYVRAWANMGISFANQGRYEESICYYVRALVMNPKAENAWQYLRISLSCA
D5ADE4______________QFFMQAQRICPTDPLVYHELGVVSYKTQEYDKAVRWFEKTLSLVPLPLTETWEPTLVNMAHALRKLRRYPQAIKSYEKALDLSSRNVSTYAGLGYTYHLQNKFDEAIHLYHKALALKPDHQFCGEMLNIALDDA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1323		28	14	57	1.0
1552	11		88		0.923564
1591	12			87	0.992554
1768			90	10	0.90298
1769		90		10	0.90298
1824	87		12		0.992554
2348	89		10		0.999919
2349	89		10		0.999919
2474	10		89		0.999919
2475			89	10	0.999919
2476			88	11	0.999937
2592		16		16	0.999991
2593		83		16	0.999991
2635	87			12	0.992554
2636		87	12		0.992554
2637			12	87	0.992554
2732		93	6		0.99903
2796	76	23			1.0
2870	83		16		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain