SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1135

Length: 2203 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene1135
TGTTCTGGTGGAGTTTAGTGGCTCTTGCTTAAACATGCAATTTGAAAGTTCAGCTGGATTTCGTTAATTAGTTTGCTGGGAATTGAAATTTGAGGGCTGGCCAGGGTTTAATAATATTTATGCTGTTGAAATGCTCTGAACAAAGGCTTTCTTTAGCGACTTCTGTAGGAGCATGGGTTGGATTAGAGCTAGGTTTGCCAAATCTTACGTAAATGGCCAAGTTTCTTGTTCGGATGTGTGAATGCCATTTGGCCGATAATTATGTTTTTGAGAGATTTTATTCTAGCCATACGTTGTAAAATATATATGAGATCTCTGCTGTCTGACCGCAGGAAACTTTGCAACCTGGATCAAATGGCTTTTATCTTTTATATTGGCCTTGCTTTTCTCGTCTTAACATCGGTTTGTGCGGCTAATGACGGCTTAGCAAGAATTGAATTGAAGAAAAAGGGATTGGATCAAAAAACTTTACAGGCTGCAAGGATTGTTGCAAGGGAAGGGGGGCTTTCTAATGAAGCTAATAGAAGGTATGGTCTGAGAGGGGATTTGGGCTACTCTGAATCTGCAAAAGGAGAATATGTTCCTCTGAAGAATTACTTGGATGCTCAGTATTATGGAGAAATTGGTCTTGGTACTCCTCCTCAGAAGTTCACTGTAATTTTCGACACAGGAAGCTCTAATCTTTGGGTGCCTTCATCGAAATGTTACTTGTCGATTGCTTGCTATTTTCATTCAAAGTACAAGGCAAGCCAATCAAGCTCCTATAGTGTCAATGGTAAACCATTTAGTATTCAGTATGGAAGTGGCTCGGTATCTGGATATTTGGGTCAAGATCACGTGACTGCTGGGGAACTTGTAGTTAAAGATCAGGTTTTTGCTGAAGTCACACAAGAGCCAGGCCTTACCTTCCTAGCTGCAAAATTTGATGGTATCCTTGGGCTTGGCTTTCAGAAAATCTCAGTAGGCAATGTTGTGCCAGTCTGGTACAATATGGTTAACCAGGGCCTAATCAAAGAACCTGTTTTCTCTTTCTGGATGAATCGAAAAGTGGATGATGAAGAGGGCGGAGAAATTGTCTTTGGTGGTGTAGATCCCGATCATTTCCAGGGTAAACACACTTATGTTCCAGTCACACGTGAAGGTTACTGGCAGTTTGACATGGGGGACTTCCTCATAGGTGGTCAATCAACAGGATTTTGCAGTGGAGGTTGTGCTGCCATTGTGGATTCCGGAACCTCTCTGCTTGCTGGTCCCTCGGGGATTGTGGCACAAATCAATGAAGCTATTGGTGCCTCGGGGCTTGCCAGCCAGGAATGTAAAAGTGTAGTCTCGCAATATGGAGATTTAATAATGGAGCTTTTGATGACACAGACAAGTCCTGAAAAGGTCTGTTCCAAAATAGGCTTATGCTCATTTGATGGTAGCAGGGATGTCAGTATGCGAATTGCTAGTGTTCTTGAGAGAGATAACGAGGCAACATCAGCCAGTAGCAGTGGCATGTGTGCTGCTTGTGAGATGGCAGTGGTATGGGCAAAGAATCAGCTAAACAAGAATGTATCCAAGGACCAAATTATGACATATCTGAATCAGCTTTGTGAACGGTTGCCAAACCCTAATGGACAAGCGGCTGTGGATTGCAATAACTTATCAAGCATGCCCACTGTGTCATTTACAATTGGTGAAAGAACTTTTGATCTCACTCCTGAGCAGTATATTCTTAAAGTTGGCGAGGGTTCTGCAGCTCAATGTATTAGTGGTTTCATGGGATTAGATGTTCCCCCTCCAATGGGACCTATCTGGATTCTTGGAGATGTATTCATGGGTGTCTATCATACCGTGTTTGATTTTGGTAACATGAGAGTGGGCTTTACAGAAGCAGCTTGAATCATTAAATTCAAGAACCTTTATAAAACTTCATGGTTCTGATAGAAGTCACCATAATATAAATCTTATTGCATTGCATTGGACAGCTGATATTGCATGTGCAAATGTATAGTATGCTAAGGAATCGTGCCTAAGATTTAAAACTAGCTATTTAACATTTCATAGCTGTTTGTATGATTCTCTGTTCGTGTGTAATTATGGACTTGTATTGTTTTTTTTTTCAAGATTTCAAGCTCAAATTCCGAAAAAGAACTATCGAATTTGTAATTGCTTCGCTGGCAATTTGATATACATAATGCTCTGAAACATTTTCTGCTGT

Ace file of the UniGene sp_v3.0_unigene1135 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase 1 n=2 Tax=Castanea mollissima RepID=D0F1P7_9ROSI	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin-like	IPR011001	-	-
Sma3	Saposin B	IPR008139	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G62290.1	Saposin-like aspartyl protease family protein chr1:23010107-23012681 REVERSE LENGTH=513	61%
RefSeq	Arabidopsis thaliana	NP_176419.2	phytepsin [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002298827.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS9

Fln msg: your sequence is longer than subject: 541 - 509

Fln protein: MFLRDFILAIRCKIYMRSLLSDRRKLCNLDQMAFIFYIGLAFLVLTSVCAANDGLARIELKKKGLDQKTLQAARIVAREGGLSNEANRRYGLRGDLGYSESAKGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSSKCYLSIACYFHSKYKASQSSSYSVNGKPFSIQYGSGSVSGYLGQDHVTAGELVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVDDEEGGEIVFGGVDPDHFQGKHTYVPVTREGYWQFDMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMTQTSPEKVCSKIGLCSFDGSRDVSMRIASVLERDNEATSASSSGMCAACEMAVVWAKNQLNKNVSKDQIMTYLNQLCERLPNPNGQAAVDCNNLSSMPTVSFTIGERTFDLTPEQYILKVGEGSAAQCISGFMGLDVPPPMGPIWILGDVFMGVYHTVFDFGNMRVGFTEAA*

Protein Length: 542

Fln nts: TGTTCTGGTGGAGTTTAGTGGCTCTTGCTTAAACATGCAATTTGAAAGTTCAGCTGGATTTCGTTAATTAGTTTGCTGGGAATTGAAATTTGAGGGCTGGCCAGGGTTTAATAATATTTATGCTGTTGAAATGCTCTGAACAAAGGCTTTCTTTAGCGACTTCTGTAGGAGCATGGGTTGGATTAGAGCTAGGTTTGCCAAATCTTACGTAAATGGCCAAGTTTCTTGTTCGGATGTGTGAATGCCATTTGGCCGATAATT_-_ATGTTTTTGAGAGATTTTATTCTAGCCATACGTTGTAAAATATATATGAGATCTCTGCTGTCTGACCGCAGGAAACTTTGCAACCTGGATCAAATGGCTTTTATCTTTTATATTGGCCTTGCTTTTCTCGTCTTAACATCGGTTTGTGCGGCTAATGACGGCTTAGCAAGAATTGAATTGAAGAAAAAGGGATTGGATCAAAAAACTTTACAGGCTGCAAGGATTGTTGCAAGGGAAGGGGGGCTTTCTAATGAAGCTAATAGAAGGTATGGTCTGAGAGGGGATTTGGGCTACTCTGAATCTGCAAAAGGAGAATATGTTCCTCTGAAGAATTACTTGGATGCTCAGTATTATGGAGAAATTGGTCTTGGTACTCCTCCTCAGAAGTTCACTGTAATTTTCGACACAGGAAGCTCTAATCTTTGGGTGCCTTCATCGAAATGTTACTTGTCGATTGCTTGCTATTTTCATTCAAAGTACAAGGCAAGCCAATCAAGCTCCTATAGTGTCAATGGTAAACCATTTAGTATTCAGTATGGAAGTGGCTCGGTATCTGGATATTTGGGTCAAGATCACGTGACTGCTGGGGAACTTGTAGTTAAAGATCAGGTTTTTGCTGAAGTCACACAAGAGCCAGGCCTTACCTTCCTAGCTGCAAAATTTGATGGTATCCTTGGGCTTGGCTTTCAGAAAATCTCAGTAGGCAATGTTGTGCCAGTCTGGTACAATATGGTTAACCAGGGCCTAATCAAAGAACCTGTTTTCTCTTTCTGGATGAATCGAAAAGTGGATGATGAAGAGGGCGGAGAAATTGTCTTTGGTGGTGTAGATCCCGATCATTTCCAGGGTAAACACACTTATGTTCCAGTCACACGTGAAGGTTACTGGCAGTTTGACATGGGGGACTTCCTCATAGGTGGTCAATCAACAGGATTTTGCAGTGGAGGTTGTGCTGCCATTGTGGATTCCGGAACCTCTCTGCTTGCTGGTCCCTCGGGGATTGTGGCACAAATCAATGAAGCTATTGGTGCCTCGGGGCTTGCCAGCCAGGAATGTAAAAGTGTAGTCTCGCAATATGGAGATTTAATAATGGAGCTTTTGATGACACAGACAAGTCCTGAAAAGGTCTGTTCCAAAATAGGCTTATGCTCATTTGATGGTAGCAGGGATGTCAGTATGCGAATTGCTAGTGTTCTTGAGAGAGATAACGAGGCAACATCAGCCAGTAGCAGTGGCATGTGTGCTGCTTGTGAGATGGCAGTGGTATGGGCAAAGAATCAGCTAAACAAGAATGTATCCAAGGACCAAATTATGACATATCTGAATCAGCTTTGTGAACGGTTGCCAAACCCTAATGGACAAGCGGCTGTGGATTGCAATAACTTATCAAGCATGCCCACTGTGTCATTTACAATTGGTGAAAGAACTTTTGATCTCACTCCTGAGCAGTATATTCTTAAAGTTGGCGAGGGTTCTGCAGCTCAATGTATTAGTGGTTTCATGGGATTAGATGTTCCCCCTCCAATGGGACCTATCTGGATTCTTGGAGATGTATTCATGGGTGTCTATCATACCGTGTTTGATTTTGGTAACATGAGAGTGGGCTTTACAGAAGCAGCTTGA___ATCATTAAATTCAAGAACCTTTATAAAACTTCATGGTTCTGATAGAAGTCACCATAATATAAATCTTATTGCATTGCATTGGACAGCTGATATTGCATGTGCAAATGTATAGTATGCTAAGGAATCGTGCCTAAGATTTAAAACTAGCTATTTAACATTTCATAGCTGTTTGTATGATTCTCTGTTCGTGTGTAATTATGGACTTGTATTGTTTTTTTTTTCAAGATTTCAAGCTCAAATTCCGAAAAAGAACTATCGAATTTGTAATTGCTTCGCTGGCAATTTGATATACATAATGCTCTGAAACATTTTCTGCTGT

Fln Alignment:

Contig1135___MAFIFYIGLAFLVLTSVCAANDGLARIELKKKGLDQKTLQAARIVAREGGLSNEANRRYGLRGDLGYSESAKGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSSKCYLSIACYFHXXXXXXXXXXXSVNGKPFSIQYGSGSVSGYLGQDHVTAGELVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVDDEEGGEIVFGGVDPDHFQGKHTYVPVTREGYWQFDMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMTQTSPEKVCSKIGLCSFDGSRDVSMRIASVLERDNEATSASSSGMCAACEMAVVWAKNQLNKNVSKDQIMTYLNQLCERLPNPNGQAAVDCNNLSSMPTVSFTIGERTFDLTPEQYILKVGEGSAAQCISGFMGLDVPPPMGPIWILGDVFMGVYHTVFDFGNMRVGFTEAA
B8LKS9______________MAFIAYIGLALLVLTSVCAANDCLARIELKKKGLDQKTLQAARIVAREGGLSNEVNRKYGLRGGLSYSESARGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSTKCYLSIACYFHSKYKASQSSSYCVNGKPFNIQYGSGSVSGYLGQDHVTAGDLVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVGDEEGGEIVFGGVDPNHFKGKHTYVPVTREGYWQFNMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLCLSDGTRDVGMRIASVLEKGNEATSTSSSGMCAACEMAVVWAKNQIARNASKDQIMTYLNQLCDRLPNPNGQAAVDCNNLSSMPTVSFTIGDRSFDLTPDQYILKVGEGSAAQCISGFMGLDVPPPMGPIWILGDVFMGVYHTVFDFGNMRVGFTEAA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
180		20		80	0.995493
901	16		83		0.994512
1024	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain