SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1119

Length: 1882 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene1119

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ELM1; ELM1 (ELONGATED MITOCHONDRIA 1)	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%

Source	Gene names
Sma3	AT5G06180; At5g22350; ELM1; GSVIVT00021564001; GSVIVT00037313001; MWD9.14; OJ000126_13.11; OSIGBa0134P10.12; OSIGBa0137L20.3; Os02g0535700; Os04g0414000; OsI_07542; OsI_15826; OsJ_07023; OsJ_14743; PHYPADRAFT_130417; POPTRDRAFT_556843; POPTRDRAFT_576557;

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrial outer membrane	GO:0005741	Cellular Component	0.0	-
Sma3	mitochondrial fission	GO:0000266	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial fission ELM1-like	IPR009367	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22350.1	ELM1 Protein of unknown function (DUF1022) chr5:7397762-7400746 REVERSE LENGTH=427	61%
RefSeq	Arabidopsis thaliana	NP_568417.1	uncharacterized protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002328231.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HHD8

Fln msg:

Fln protein: MRPIRLPEPPGASSGMPEIFDSGVSSVVRRAVIIGNGVPGAENQCIGLVRALGLTQSNTHSIFRVTRPRGGYNEWLRWLPVSLHKRLDYLIRHICADLPLINHFRGKQFAPSTLAQRTSADSISIPEADARQIATMAREITDKEGPLLVVASGRDTVSIASAIKRLAPKNTFVIQIQHPRCQLNRFDLVVTPHHDFYALTPAGRQQVPRFLRNWITPREPPDRKVVLTVGALHQADFATLRMAAAQWHDELAPLPKPLLVVNIGGPTRHCKYGADLAVKLVDALYKVLGKCGTVRISFSRRTPLQVCNIMWKEFGSHPKVYIWDGQDPNPHLGHLAWADAFVVTADSISMLSEACSTGKPVYVIGAERCTWKFAAFHNTLRQRGVVRTFTGTEDMSDSWSYPPLNDNAEAASRVREALAEHGWSLR*

Protein Length: 428

Fln nts: GAGGCTTTGCAGAGCCGAGCGAAGACAGAATTAAAAGGCGAGCAGCAGCAGGGATTCCATAGATAGGAATAACCGAAGGACAGTCCTTCTAAACATCTTCCTAAAGTGCAGGGCTTGAAGAAAGGAAGTGAAGGGGTAACTGGCGGCATTTAGCTCTCAATTATTTAGGTCGTTAAGTATAAAGGAGAGCA_-_ATGAGGCCTATAAGGCTACCAGAGCCTCCCGGCGCTTCGTCAGGTATGCCAGAGATTTTTGATAGCGGGGTGTCTAGCGTTGTAAGAAGGGCTGTCATAATTGGCAATGGTGTCCCCGGTGCTGAGAATCAGTGCATCGGACTCGTTAGAGCTCTCGGACTAACACAATCGAACACACATTCTATATTTCGTGTTACAAGACCAAGAGGAGGTTATAACGAATGGTTGAGATGGCTTCCTGTTTCCCTTCACAAAAGGCTGGATTATCTGATAAGACATATTTGTGCTGATTTACCACTTATAAATCATTTCAGAGGAAAACAATTTGCACCTTCTACTTTGGCACAAAGGACTAGTGCAGATTCTATATCTATTCCAGAAGCTGATGCAAGGCAGATTGCAACAATGGCTCGTGAAATTACGGACAAAGAGGGACCATTGCTGGTGGTTGCATCTGGTCGGGACACAGTTTCAATTGCGAGTGCAATAAAAAGACTTGCTCCCAAAAATACATTTGTAATACAGATACAACACCCGAGGTGTCAGCTCAATCGATTTGACTTGGTGGTCACCCCTCACCATGATTTTTATGCTTTGACTCCTGCTGGACGGCAACAAGTTCCTCGTTTTCTACGGAATTGGATAACTCCTAGAGAGCCACCAGATAGAAAAGTGGTGCTTACGGTCGGAGCTTTGCACCAGGCTGATTTTGCAACATTACGAATGGCTGCTGCACAGTGGCATGATGAATTAGCACCACTTCCAAAGCCATTGCTTGTTGTGAATATAGGGGGACCTACAAGACATTGTAAATATGGCGCAGACCTTGCTGTAAAGCTAGTAGATGCTCTATATAAGGTGCTTGGTAAATGCGGGACTGTACGCATTTCTTTCTCGAGAAGAACGCCTCTTCAGGTGTGTAACATAATGTGGAAAGAATTTGGTAGTCATCCAAAGGTCTATATTTGGGATGGCCAAGATCCAAACCCACACTTAGGGCACCTTGCGTGGGCTGATGCCTTTGTAGTCACAGCAGATTCGATCAGTATGCTAAGTGAAGCATGTAGTACTGGGAAGCCAGTGTATGTCATTGGAGCAGAACGATGTACATGGAAATTTGCAGCATTTCATAATACTCTCCGTCAACGAGGTGTTGTGAGAACATTCACTGGAACAGAGGATATGTCTGACAGCTGGAGCTATCCTCCTCTTAATGACAATGCTGAAGCAGCTAGTCGTGTACGAGAAGCCCTTGCAGAGCATGGATGGAGTTTAAGATGA___ATGAGAGATGTGGAAAAAGCAAACTCCCTCTTGTTGTTGCATCACTTTAGAACATTTGCCAGGCCTGGCGTTGAAGAGATATTGTTGTGTGGGCATAATCTATGATTTCTAATAAGTTGAAAAATAATCACAAAAATTCCTATGTAAAATAGAAGACCATTATTTCATTATTGCTACTGATCTTAACACTGTAGCATTTTTACGATTTCTGCCTCTTTTGAAGTAGAGGTCTTTTGTCATGAATAATGACACATGGATTGGCAGCGCGTTTTTGGTTTTGTCTAAGTGATGGCTAAGAAGTGGTCACTTGAATGTACAGCTGACATCCAAGTGTGTAGAGTTTTGCTGAACACTGGATGGGAGTACAAGTATTCAGTCTTTATGGATGAATATTCTCATGTTAATTACTA

Fln Alignment:

Contig1119___LPEPPGASSGMPEIFDSGVSSVVRRAVIIGNGVPGAENQCIGLVRALGLTQSNTHSIFRVTRPRGGYNEWLRWLPVSLHKRLDYLIRHICADLPLINHFRGKQFAPSTLAQRTSADSISIPEADARQIATMAREITDKEGPLLVVASGRDTVSIASAIKRLAPKNTFVIQIQHPRCQLNRFDLVVTPHHDFYALTPAGRQQVPRFLRNWITPREPPDRKVVLTVGALHQADFATLRMAAAQWHDELAPLPKPLLVVNIGGPTRHCKYGADLAVKLVDALYKVLGKCGTVRISFSRRTPLQVCNIMWKEFGSHPKVYIWDGQDPNPHLGHLAWADAFVVTADSISMLSEACSTGKPVYVIGAERCTWKFAAFHNTLRQRGVVRTFTGTEDMSDSWSYPPLNDNAEAASRVREALAEHGWSLR
F6HHD8______________LPEPPGPSLGVPEIFEGGAYSVIRRAVIIGNGFPGSENQSIGLVRALGLADKQV--LYRVTRPRGGINEWLHWLPVSLHKKLDYIIRQL-----LLLTVRRRKLMPVPMENGGSVGLSSVLEADVKQIVTMASETYEKEGPLLVVASGRDTISIASSIKKLAAENVFVVQIQHPRSQLHRFDLVVTPHHDYYPLTPQAQKQIPRCLRRWITPLEPPDRHVVLTVGALHQIDSSALRSAASAWHDEFAPLPKPLLVVNIGGPTSHCRYGVDLAKQLSACLHGVLVSCGSVRISFSERTPEKVSNVIVKEHIDNPKVYIWDGAEPNPHMGHLAWADAFVVTADSVSMISEACSTGKPVYVIGAERCTWKFSDFHNTLRERGVVRPFTGSEDISESWSYPPLNDTAEAAIKVREALAERGWRLR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1303	66		33		0.997452
1546	12		87		0.992554
1632	66			16	0.988813
1633	16	83			0.994512
1751			50	25	0.995533
1752			50	50	1.0
1837			77	22	0.999999
1864		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain