SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1116

Length: 3118 nt

UniGene Fasta

>sp_v3.0_unigene1116
TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGGCATTTGTCAGCATTGCCTTAGCGCCCAACCAATGACATAAATTCATTTGGCATAAGGGTTTCAATTGTCGGAACGACAGAGCCATTTCAATTGTTCATGCTCTAATCATAGAAACCCATGAAGCAATTGATGCGATTTTCACTGTTCGAACGTGAACGAGGAGAAATTGGATTAGGCTGGATGTCGTTTTTTGGTAACCGGGAAAAGGCTTTTGCTTGAAGTAACAGAAACATCATTCTCTGAGCGGTTGGTAGCAGAGGTTACCATGATCACCGAACCTAAAAATTCGGGGAAATAAATTGAAATTCGAGTATGAGTTGAGTTGACAAGATCGGGTTTTCATAGGGAGCGAGAGATTTTTCTTATTTGTTTCTAGGGTTACGCCATGGCGTTTAACTGCAGGGTTTTGGTCCGTGGAGTTGTAGCCCTGTTATTGCTCTGTAATATTATTAATTGTCTGGAAATTACGAAGGTCGAAAATGGATCCGTTAAAATGGGGACAGGTGCGATGGTTTTGCCGCTCACGCTGTCGACGGCGAAGGGAAATGCATCGTCGCATCCGTTAATTAGGCGCTTGGCGAGTGGAAAACCCAAGCATCCCAGCGCTCGCATGAAGCTTTATGATGATCTACTTACCAATGGCTACTATACTACAAGGCTCTGGATTGGAAAGCCGCCACAAGAATTTGCTCTAATTGTGGATTCAGGCAGCACTGTTACATATGTTCCCTGTTCAACCTGTACACGATGTGGCAATCACCAGGATCCAAGATTTCAACCGGATTTGTCAAGCACCTACCAGCCTGTAAAATGTGGTTTAGATTGTGGTCTTTGTGACATAGACAAAAATCAATGTAAATATGAGAGACAATATGCAGAGATGAGCAGCAGCAGCGGTGTACTTGGAGAGGATATGGTGTCTTTTGGTGTTGATAGTGCACTTCCGCCACAACGTGCAGTGTTTGGGTGTGAAAATTCGGAAACTGGTGACCTCTATCATCAACATGCAGATGGAATTATGGGGCTTGGCCGCGGTCAGCTTAGCATCATGGATCAACTTGTTCAGCATGGTGTGATAGGCGATTCGTTCTCTTTATGTTATGGTGGGATGGATGTAGGTGGAGGGGCCATGGTTTTGGGTGCAATTCCTCCTCCTCCAGACATGGTGTTCTCCACATCAAATCCAAATCGCAGTCCATACTACAATATACATCTGAAAGGAATAAGCGTTGCTGGTAATCCACTGCCCTTGGATCCTCAAGTATTCAACAATAGATATGGTACTGTCTTGGATAGTGGAACTACATATGCTTACCTACCAGAAGCAGCATTTGTAGCCTTCAGAGATTCTGTGATAAAGCATCTTCATTCACTCAAGCGAATTTCTGGTCCAGATCCATCATATCCTGACATTTGCTTTTCCGGTGCTGGAAGAGATGTTTCACAGCTTAGCAAACATTTTCCACAAATTGATTTGCTACTTGGTAATGGCCAAAAAGTTCAATTGGCTCCTGAAAATTACATATTCCGGCATTCCAAAGTGCATGGTGCTTACTGCCTGGGAATTTTCCAAAATGGAAAAGATCCCACTACTCTTCTTGGTGGTATTGTGGTCCGCAACATGCTCGTAACCTATGATAGGGCCAATGAAAAGATAGGATTTTGGAGGACTAATTGTTCTGAACTATGGGAGAGATTGCAGGCAGCTGTACCTCCGCCGCCTGCAAAGTCAAACTCTGAAGGAAAAAATTCAAGTGATAGTATACCACCACCACCTGCAAAGTCGAACTCTGAAGGAAAAAATTCAAGTGATAGTATTCCACCACCACCTGCAAAGTCACACACTGGAAAAAAGAATTCTAGTGATAGCATGGATGTTTGGCCACCTGCTTTACCTCCATCACCAGTAAATGAAGGAGTGTATCGGGAAATTGGAGGAATAGAACTATATATGTCCATGACTGTTAATCCTAAGGCTTCCGGGTCCCTTGTGACTGAATTCAAAGAAGATATGGCACGGGAGCTGGAAGTTGCTGTTGATCAGCAAACACAGGTTGATATTCTGAATGTCAGCAACAGAGGAGATACATTACAAATTGAATGTGCCGTTTTGCCAGCTGACACTAGTAATCATATGACAAACAGTACTGCAGAGACAATCATCTCCCTTTTAAATGGACATCAAGTTCATCTTCGTGACGCCTTTGCAACTTACCATCTATTGAGCTGGAAGATTTTGCCATCATCGAAAAGGACATGGCTCCAGCAACATGGATTAGTGCTCTTTGGTGCTGCTGCAGGTGTAACAGTAATTGCCTCAGCCTTATTAATGTATTGGTATTGTTGGAGACAAAAGCAAGAAGTACTTGGAAAATACACGACAGTAGATGCTGCAAATCTTGATGAAGAGCTTCAGCAACTTTGATTTGTATAATATCTTGCATGATCCAATTTAATAAAATTCTAGTATCCTCAATATGTTCTTGCCAATTGAATATACCGTCTAATTTGGGATGGTCTGTACAATTTTTCAATCCCTTCCTGTTCTTTTAACTTCCTCTCACTTCTGATGTAATATTCTTCGCAATGTTGTGGTTTCAGCAGTTGTCTGATATGGTCATTGTCAAAAACACTTCTGTTTTTCCCTTTGTGGCAGAACATCTAGGTGCATAATCCTTGGTTTCGTACCTAAAAGTTGATCCAATTTCTCACCATTGTGAAAGCTTGGTTGAGTGGTTGGTCAATACAAGTTTGTCTCTTCATTTTACTGCTGTGATGGTTGTCATCTTACCTTTCTTTCATTGCACTCTTGTGACTTGAGTGAGTTCTGAGGGAGCTTTTAGTCATTCAGGCAGTGTTTATTACTGGAGTTTTTGTTTGTGTTACATTAGTCTTTACTTGATGTTAGTTGGGTACATCAAGTGTCCACCTTGAGAGCTTCAAGAATTCAGGCTGTCTACGAGACATAGATGCATAATAGAAGTTATTTTTATCTATACCAAGTTCTCATGTGTCCCTTCCATGGAACTGCAAAATGCACAATGTGATATTAACTTAATTAATATACACAATGAAAAC

Ace file of the UniGene sp_v3.0_unigene1116

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] gb\|AED94910.1\| aspartyl protease family protein [Arabidopsis thaliana]	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Aspartic proteinase nepenthesin-1, putative	-	-	1.086e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pepsin A.	EC:3.4.23.1	-	1.289e-08	-

Source	Gene names
Sma3	ASP2; At3g50050; CHLREDRAFT_206044; F3A4.130; GSVIVT00014924001; GSVIVT00019616001; OJ1710_H11.105-1; Os07g0592200; OsI_26705; OsJ_24961; PHYPADRAFT_11626; PHYPADRAFT_179925; POPTRDRAFT_1110563; POPTRDRAFT_831438; RCOM_0257350; RCOM_1154900; RCOM_1588220;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G43100.1	Eukaryotic aspartyl protease family protein chr5:17299264-17302718 FORWARD LENGTH=631	51%
RefSeq	Arabidopsis thaliana	NP_199124.3	aspartyl protease family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002306494.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMX2

Fln msg: your sequence is longer than subject: 680 - 454

Fln protein: MAFNCRVLVRGVVALLLLCNIINCLEITKVENGSVKMGTGAMVLPLTLSTAKGNASSHPLIRRLASGKPKHPSARMKLYDDLLTNGYYTTRLWIGKPPQEFALIVDSGSTVTYVPCSTCTRCGNHQDPRFQPDLSSTYQPVKCGLDCGLCDIDKNQCKYERQYAEMSSSSGVLGEDMVSFGVDSALPPQRAVFGCENSETGDLYHQHADGIMGLGRGQLSIMDQLVQHGVIGDSFSLCYGGMDVGGGAMVLGAIPPPPDMVFSTSNPNRSPYYNIHLKGISVAGNPLPLDPQVFNNRYGTVLDSGTTYAYLPEAAFVAFRDSVIKHLHSLKRISGPDPSYPDICFSGAGRDVSQLSKHFPQIDLLLGNGQKVQLAPENYIFRHSKVHGAYCLGIFQNGKDPTTLLGGIVVRNMLVTYDRANEKIGFWRTNCSELWERLQAAVPPPPAKSNSEGKNSSDSIPPPPAKSNSEGKNSSDSIPPPPAKSHTGKKNSSDSMDVWPPALPPSPVNEGVYREIGGIELYMSMTVNPKASGSLVTEFKEDMARELEVAVDQQTQVDILNVSNRGDTLQIECAVLPADTSNHMTNSTAETIISLLNGHQVHLRDAFATYHLLSWKILPSSKRTWLQQHGLVLFGAAAGVTVIASALLMYWYCWRQKQEVLGKYTTVDAANLDEELQQL*

Protein Length: 681

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGGCATTTGTCAGCATTGCCTTAGCGCCCAACCAATGACATAAATTCATTTGGCATAAGGGTTTCAATTGTCGGAACGACAGAGCCATTTCAATTGTTCATGCTCTAATCATAGAAACCCATGAAGCAATTGATGCGATTTTCACTGTTCGAACGTGAACGAGGAGAAATTGGATTAGGCTGGATGTCGTTTTTTGGTAACCGGGAAAAGGCTTTTGCTTGAAGTAACAGAAACATCATTCTCTGAGCGGTTGGTAGCAGAGGTTACCATGATCACCGAACCTAAAAATTCGGGGAAATAAATTGAAATTCGAGTATGAGTTGAGTTGACAAGATCGGGTTTTCATAGGGAGCGAGAGATTTTTCTTATTTGTTTCTAGGGTTACGCC_-_ATGGCGTTTAACTGCAGGGTTTTGGTCCGTGGAGTTGTAGCCCTGTTATTGCTCTGTAATATTATTAATTGTCTGGAAATTACGAAGGTCGAAAATGGATCCGTTAAAATGGGGACAGGTGCGATGGTTTTGCCGCTCACGCTGTCGACGGCGAAGGGAAATGCATCGTCGCATCCGTTAATTAGGCGCTTGGCGAGTGGAAAACCCAAGCATCCCAGCGCTCGCATGAAGCTTTATGATGATCTACTTACCAATGGCTACTATACTACAAGGCTCTGGATTGGAAAGCCGCCACAAGAATTTGCTCTAATTGTGGATTCAGGCAGCACTGTTACATATGTTCCCTGTTCAACCTGTACACGATGTGGCAATCACCAGGATCCAAGATTTCAACCGGATTTGTCAAGCACCTACCAGCCTGTAAAATGTGGTTTAGATTGTGGTCTTTGTGACATAGACAAAAATCAATGTAAATATGAGAGACAATATGCAGAGATGAGCAGCAGCAGCGGTGTACTTGGAGAGGATATGGTGTCTTTTGGTGTTGATAGTGCACTTCCGCCACAACGTGCAGTGTTTGGGTGTGAAAATTCGGAAACTGGTGACCTCTATCATCAACATGCAGATGGAATTATGGGGCTTGGCCGCGGTCAGCTTAGCATCATGGATCAACTTGTTCAGCATGGTGTGATAGGCGATTCGTTCTCTTTATGTTATGGTGGGATGGATGTAGGTGGAGGGGCCATGGTTTTGGGTGCAATTCCTCCTCCTCCAGACATGGTGTTCTCCACATCAAATCCAAATCGCAGTCCATACTACAATATACATCTGAAAGGAATAAGCGTTGCTGGTAATCCACTGCCCTTGGATCCTCAAGTATTCAACAATAGATATGGTACTGTCTTGGATAGTGGAACTACATATGCTTACCTACCAGAAGCAGCATTTGTAGCCTTCAGAGATTCTGTGATAAAGCATCTTCATTCACTCAAGCGAATTTCTGGTCCAGATCCATCATATCCTGACATTTGCTTTTCCGGTGCTGGAAGAGATGTTTCACAGCTTAGCAAACATTTTCCACAAATTGATTTGCTACTTGGTAATGGCCAAAAAGTTCAATTGGCTCCTGAAAATTACATATTCCGGCATTCCAAAGTGCATGGTGCTTACTGCCTGGGAATTTTCCAAAATGGAAAAGATCCCACTACTCTTCTTGGTGGTATTGTGGTCCGCAACATGCTCGTAACCTATGATAGGGCCAATGAAAAGATAGGATTTTGGAGGACTAATTGTTCTGAACTATGGGAGAGATTGCAGGCAGCTGTACCTCCGCCGCCTGCAAAGTCAAACTCTGAAGGAAAAAATTCAAGTGATAGTATACCACCACCACCTGCAAAGTCGAACTCTGAAGGAAAAAATTCAAGTGATAGTATTCCACCACCACCTGCAAAGTCACACACTGGAAAAAAGAATTCTAGTGATAGCATGGATGTTTGGCCACCTGCTTTACCTCCATCACCAGTAAATGAAGGAGTGTATCGGGAAATTGGAGGAATAGAACTATATATGTCCATGACTGTTAATCCTAAGGCTTCCGGGTCCCTTGTGACTGAATTCAAAGAAGATATGGCACGGGAGCTGGAAGTTGCTGTTGATCAGCAAACACAGGTTGATATTCTGAATGTCAGCAACAGAGGAGATACATTACAAATTGAATGTGCCGTTTTGCCAGCTGACACTAGTAATCATATGACAAACAGTACTGCAGAGACAATCATCTCCCTTTTAAATGGACATCAAGTTCATCTTCGTGACGCCTTTGCAACTTACCATCTATTGAGCTGGAAGATTTTGCCATCATCGAAAAGGACATGGCTCCAGCAACATGGATTAGTGCTCTTTGGTGCTGCTGCAGGTGTAACAGTAATTGCCTCAGCCTTATTAATGTATTGGTATTGTTGGAGACAAAAGCAAGAAGTACTTGGAAAATACACGACAGTAGATGCTGCAAATCTTGATGAAGAGCTTCAGCAACTTTGA___TTTGTATAATATCTTGCATGATCCAATTTAATAAAATTCTAGTATCCTCAATATGTTCTTGCCAATTGAATATACCGTCTAATTTGGGATGGTCTGTACAATTTTTCAATCCCTTCCTGTTCTTTTAACTTCCTCTCACTTCTGATGTAATATTCTTCGCAATGTTGTGGTTTCAGCAGTTGTCTGATATGGTCATTGTCAAAAACACTTCTGTTTTTCCCTTTGTGGCAGAACATCTAGGTGCATAATCCTTGGTTTCGTACCTAAAAGTTGATCCAATTTCTCACCATTGTGAAAGCTTGGTTGAGTGGTTGGTCAATACAAGTTTGTCTCTTCATTTTACTGCTGTGATGGTTGTCATCTTACCTTTCTTTCATTGCACTCTTGTGACTTGAGTGAGTTCTGAGGGAGCTTTTAGTCATTCAGGCAGTGTTTATTACTGGAGTTTTTGTTTGTGTTACATTAGTCTTTACTTGATGTTAGTTGGGTACATCAAGTGTCCACCTTGAGAGCTTCAAGAATTCAGGCTGTCTACGAGACATAGATGCATAATAGAAGTTATTTTTATCTATACCAAGTTCTCATGTGTCCCTTCCATGGAACTGCAAAATGCACAATGTGATATTAACTTAATTAATATACACAATGAAAAC

Fln Alignment:

Contig1116___GYYTTRLWIGKPPQEFALIVDSGSTVTYVPCSTCTRCG---------NHQDPRFQPDLSSTYQPVKC---------GLDCGLCDIDKNQCKYERQYAEMSSSSGVLGEDMVSFG--VDSALPPQ---RAVFGCENSETGDLYH--QHADGIMGLGRGQLSIMDQLVQHGVIGDSFSLCYGGMDVGGGAMVLGAIPPPPDMVFSTSNPNRSPYYNIHLKGISVAGNPLPLDPQVF--NNRYGTVLDSGTTYAYLPEAAFVAFRDSVIKHLHSLKRISGPDPSYPDICFSGAGRDVSQLSKHFPQIDLLLGNGQKVQLAPENYIFRHSKVHGA--YCLGIFQNGKDPT-----TLLGGIVVRNMLVTYDRANEKIGFWRTNCSELWERLQAAVPPPPAKSNSEGKNSSDSIPP
B8LMX2______________GLYYTRIELGTPPRPFYVQIDTGSDILWVNCKPCNACPLTSGLGVALNFFDPRG----SSTASPLSCIDSKCVSSNQISESVCTTDR-YCGYSFEYGDGSGTLGYYVSDEFDYNQYVNQYVTNNASAKITFGCSYNQSGDLTKPDRAVDGIFGFGQNDLSVVSQLNSQGLAPKIFSHCLEGADPGGGILVLGEI-TEPGMVYTPIVPSQ-PHYNLNLQGIAVNGQQLSIDPQVFATTNTRGTIIDCGTTLAYLAEEAYEPFVNTIIA---AVSQSTQPFMLKGNPCF----LTVHSIDEIFPSVTLYF-EGAPMDLKPKDYLIQQLSPDSSPVWCIGWQKSGQQATDSSKMTILGDLVLKDKVFVYDLENQRIGWTSFDCS---STVNVSTDSGESKSFDTAKLNNNGSPP

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
358	25			75	0.996473
363			25	75	0.996473
364			25	75	0.996473
804	11		88		0.923564
805	88	11			0.923564
808		87	12		0.992554
810	85		14		0.993533
935		83		16	0.994512
1010		12		87	0.992554
1156		11		88	0.923564
1389	16			83	0.994512
1463		83		16	0.994512
1613	87	12			0.992554
1615	87			12	0.992554
1756		80		20	0.999996
1859	28			71	1.0
1951	88			11	0.923564
1952		22		77	0.999999
1955	77		22		0.999999
1958	88	11			0.923564
1959	11		88		0.923564
1963	88			11	0.923564
1973			11	88	0.923564
2021		77		22	0.999999
2044	90			10	0.90298
2045	90	10			0.90298
2048	90			10	0.90298
2051		10		90	0.90298
2052	90	10			0.90298
2058		90		10	0.90298
2060			90	10	0.90298
2061		10	90		0.90298
2063			90	10	0.90298
2319			87	12	0.992554
2339	90			10	0.90298
2366	87		12		0.992554
2385		11		88	0.923564
2387		11	88		0.923564
2389			88	11	0.923564
2676		90		10	0.90298
3035		16		83	0.994512

SSRs (tot: 3)

Start position	End position	Sequence	Length
924	935	AGC AGC AGC AGC	12
1187	1198	TCC TCC TCC TCC	12
1805	1816	ACC ACC ACC ACC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain