SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene1029

Length: 2245 nt

UniGene Fasta

>sp_v3.0_unigene1029
GCGTCGGCCCAATTAATGAATCTGAAAGAAAATTTGTGGGAGTGCCTTGTTATAAAAATTCTGTGGATACAATATTCCTAGTTTAATCGCGTGATATTTCTGGAGAGCAAATATTCATTCCGGCAGTCCAGGCAATAAGATCGACGAATTTCCCTTAGGAACCACGAGATTGTTCTGCCGTAATATATGCAATCCTTCATCCATGCGTGTTCGGCGGACTGGAGTAAATGAAATTCATCGGGATTACATTAATTGGCACATAAATTTGAATTTTTGATAGGCCGAAACAACCCAACAGCTGGAAGAAATCTCCGGGCTAGAAACACACCACACCAGAATAACCAGTTCGAAATTTCATCTTTCTTGGCTGGCAACGGAAAAACCCTTGGGAATCATTATGGGAGACTTACAGAACACAGACCTTGGAACAATGGATCAAGATGAGTCGCCTGAAGTTGATATCGGGGTGGTCTCGACGATTTTATCTGCAATTTCACATGATAAAGATTGCACCGAGCAGTGGGCTTGGGAACAGGGAGTTAAGATCTTTGTAAAATTGTTGAATTCTGGTAGGGAATTAGTGCAAATTAGAGCCACAATTACGCTTGGAAGAATATCAAAGTTTGCTCCGGAATACATTTTAGAACAAACAGTGCCACATTTGATTGCTCTTCTCTGTCTCCCTTCCAGTGGTGGGTCTCCATCCGTTCAAGAGACAGCTGCTTTTTGCTTGGGAAGGCTTGCACGCAGAGGGGATCATTTGAGCTCTACTATTGGAGATTCTGGAACTATTCCCATCCTTGTAAGACTCTTGCTAGAATCTGAAGGGAGAATGCAGAGGGTGGTGGTCAAGGCTTTGAGGGAGCTTGTCGTATGTACACAGAGTAATCAAGTAATTCTGGCTAGGAGTGGAGCACAAGTAATAATGAATCTTATAGCTTCATCCCCTGATGATGTAAAGAAAATCGCTGCAGAAATATTGACTTCATTAACACACTTGAAGGACATTCGACGAGAAATAGCTAGTTTGGGTGGAATCCCCATGTTAATCCAGTCAGCTAGATTAGGCAGGATTGCATCTAGAGTCAGGGCAGCTCAGGCAATTGGACAGCTAGGAGTCACCAGAAGGGTCAGAAGGATGCTTGTGAATGCAGGTGCTATTACTGTTTTGATTGAGCTGCTAAAAGAAAATGATTTGGCTGCAAAGCTTGTTGCCGGGAATGCTCTTGGAATAATATCGGCCCATGTTGATTATCTTAGGCCTGTTGCTCAGGCTGGTGCCATTCCCCTCTTTGTGGAATTGCTTGAAGGAACCAATCCCCAGGGGAAAGAAATTGCTGAAGATGTCTTTTGTATTTTGGCAGTTGCAGAAGAGAATGCTATAGCCATTGCGGAGCACTTAGTGAGGATACTACAAGGTTCCAATGTTGAAGCAAAAGCTGCAGCAGCGGATGTTGTATGGGATCTCTCTAGCTACAAACATTCTGTCTCTGTTGTCAGAGCTTCAGGTGCAATCCCTCTACTTCTGAGACTGTTGGAGGATGAGAATGATGATGTTAGAGAGAAGGCATCTGGTGCTGTTGCACAATTGAGTTATGATCGTGCTGACAGACTAGCATTAACAGAGGCTGGGGCTGTCCCCATACTTCTGTCATTGTTGCAGAATGAATCAGAAGAGCTCAAAGACAATGCTGCTGAAGCCCTGATCAATTTCTCAGAGGACCCATCATTGAGAGATATGATTTCACAAGCATTTGATGTTCCTGCATTCCGAGATATACAGCAGAGACTTATGAGGATACAGCAATCAGATGAGCATACCGCTCACTCGCTAAGGTATATGGGGCTGGAGCAATTTACATCCTAAGCCTGTCTGGTTCATAAACAGTTCTGGTAGATATGAATATTTATCTTTATTCATGTTTAATGACCAATCAAGCCTGTGTACAAGTGAGAGACATGACTAATTGGATATTCTCTCATTCTCGAATAGAAAAGGAAAACAGAACCAATCCCTTCAAAAGGCATTGTGGGATATTATATTGTTTGCCCAGTTTCACTGGATTCTATTCAGCACCTCTTAAACTAAAACCATGGGGCTTTCAACTGCTCGAACCTTATATTCGTTTTGTTGAATTTGCACTATTTTGGGGGAAATACCAGATTCTAATATTTGTTGGTTAGAATCTTTATGGTAAAATGTCATTATGTATATTGTATCTAATCTTATTTAACTACGGTGGAG

Ace file of the UniGene sp_v3.0_unigene1029

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KAP domain containing protein	-	-	3.0e-05	25%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%

Source	Gene names
Sma3	At3g20170; GSVIVT00027196001; RCOM_0423990; VITISV_006363;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20170.1	ARM repeat superfamily protein chr3:7041780-7043207 FORWARD LENGTH=475	0.0	46%
RefSeq	Arabidopsis thaliana	NP_188652.1	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HER8

Fln msg: your sequence is longer than subject: 490 - 455

Fln protein: MGDLQNTDLGTMDQDESPEVDIGVVSTILSAISHDKDCTEQWAWEQGVKIFVKLLNSGRELVQIRATITLGRISKFAPEYILEQTVPHLIALLCLPSSGGSPSVQETAAFCLGRLARRGDHLSSTIGDSGTIPILVRLLLESEGRMQRVVVKALRELVVCTQSNQVILARSGAQVIMNLIASSPDDVKKIAAEILTSLTHLKDIRREIASLGGIPMLIQSARLGRIASRVRAAQAIGQLGVTRRVRRMLVNAGAITVLIELLKENDLAAKLVAGNALGIISAHVDYLRPVAQAGAIPLFVELLEGTNPQGKEIAEDVFCILAVAEENAIAIAEHLVRILQGSNVEAKAAAADVVWDLSSYKHSVSVVRASGAIPLLLRLLEDENDDVREKASGAVAQLSYDRADRLALTEAGAVPILLSLLQNESEELKDNAAEALINFSEDPSLRDMISQAFDVPAFRDIQQRLMRIQQSDEHTAHSLRYMGLEQFTS*

Protein Length: 491

Fln nts: GCGTCGGCCCAATTAATGAATCTGAAAGAAAATTTGTGGGAGTGCCTTGTTATAAAAATTCTGTGGATACAATATTCCTAGTTTAATCGCGTGATATTTCTGGAGAGCAAATATTCATTCCGGCAGTCCAGGCAATAAGATCGACGAATTTCCCTTAGGAACCACGAGATTGTTCTGCCGTAATATATGCAATCCTTCATCCATGCGTGTTCGGCGGACTGGAGTAAATGAAATTCATCGGGATTACATTAATTGGCACATAAATTTGAATTTTTGATAGGCCGAAACAACCCAACAGCTGGAAGAAATCTCCGGGCTAGAAACACACCACACCAGAATAACCAGTTCGAAATTTCATCTTTCTTGGCTGGCAACGGAAAAACCCTTGGGAATCATT_-_ATGGGAGACTTACAGAACACAGACCTTGGAACAATGGATCAAGATGAGTCGCCTGAAGTTGATATCGGGGTGGTCTCGACGATTTTATCTGCAATTTCACATGATAAAGATTGCACCGAGCAGTGGGCTTGGGAACAGGGAGTTAAGATCTTTGTAAAATTGTTGAATTCTGGTAGGGAATTAGTGCAAATTAGAGCCACAATTACGCTTGGAAGAATATCAAAGTTTGCTCCGGAATACATTTTAGAACAAACAGTGCCACATTTGATTGCTCTTCTCTGTCTCCCTTCCAGTGGTGGGTCTCCATCCGTTCAAGAGACAGCTGCTTTTTGCTTGGGAAGGCTTGCACGCAGAGGGGATCATTTGAGCTCTACTATTGGAGATTCTGGAACTATTCCCATCCTTGTAAGACTCTTGCTAGAATCTGAAGGGAGAATGCAGAGGGTGGTGGTCAAGGCTTTGAGGGAGCTTGTCGTATGTACACAGAGTAATCAAGTAATTCTGGCTAGGAGTGGAGCACAAGTAATAATGAATCTTATAGCTTCATCCCCTGATGATGTAAAGAAAATCGCTGCAGAAATATTGACTTCATTAACACACTTGAAGGACATTCGACGAGAAATAGCTAGTTTGGGTGGAATCCCCATGTTAATCCAGTCAGCTAGATTAGGCAGGATTGCATCTAGAGTCAGGGCAGCTCAGGCAATTGGACAGCTAGGAGTCACCAGAAGGGTCAGAAGGATGCTTGTGAATGCAGGTGCTATTACTGTTTTGATTGAGCTGCTAAAAGAAAATGATTTGGCTGCAAAGCTTGTTGCCGGGAATGCTCTTGGAATAATATCGGCCCATGTTGATTATCTTAGGCCTGTTGCTCAGGCTGGTGCCATTCCCCTCTTTGTGGAATTGCTTGAAGGAACCAATCCCCAGGGGAAAGAAATTGCTGAAGATGTCTTTTGTATTTTGGCAGTTGCAGAAGAGAATGCTATAGCCATTGCGGAGCACTTAGTGAGGATACTACAAGGTTCCAATGTTGAAGCAAAAGCTGCAGCAGCGGATGTTGTATGGGATCTCTCTAGCTACAAACATTCTGTCTCTGTTGTCAGAGCTTCAGGTGCAATCCCTCTACTTCTGAGACTGTTGGAGGATGAGAATGATGATGTTAGAGAGAAGGCATCTGGTGCTGTTGCACAATTGAGTTATGATCGTGCTGACAGACTAGCATTAACAGAGGCTGGGGCTGTCCCCATACTTCTGTCATTGTTGCAGAATGAATCAGAAGAGCTCAAAGACAATGCTGCTGAAGCCCTGATCAATTTCTCAGAGGACCCATCATTGAGAGATATGATTTCACAAGCATTTGATGTTCCTGCATTCCGAGATATACAGCAGAGACTTATGAGGATACAGCAATCAGATGAGCATACCGCTCACTCGCTAAGGTATATGGGGCTGGAGCAATTTACATCCTAA___GCCTGTCTGGTTCATAAACAGTTCTGGTAGATATGAATATTTATCTTTATTCATGTTTAATGACCAATCAAGCCTGTGTACAAGTGAGAGACATGACTAATTGGATATTCTCTCATTCTCGAATAGAAAAGGAAAACAGAACCAATCCCTTCAAAAGGCATTGTGGGATATTATATTGTTTGCCCAGTTTCACTGGATTCTATTCAGCACCTCTTAAACTAAAACCATGGGGCTTTCAACTGCTCGAACCTTATATTCGTTTTGTTGAATTTGCACTATTTTGGGGGAAATACCAGATTCTAATATTTGTTGGTTAGAATCTTTATGGTAAAATGTCATTATGTATATTGTATCTAATCTTATTTAACTACGGTGGAG

Fln Alignment:

Contig1029___AWEQGVKIFVKLLNSGRELVQIRATITLGRISKFAPEYILEQTVPHLIALLCLXXXXXXXXVQETAAFCLGRLARRGD--HLSSTIGDSGTIPILVRLLLESEGRMQRVVVKALRELVVCTQSNQVILARSGA-QVIMNLIASSPDDVKKIAAEILTSLTHLKDIRREIASLGGIPMLIQSARLGRIASRVRAAQAIGQLGVTRRVRRMLVNAGAITVLIELLKENDLAAKLVAGNALGIISAHVDYLRPVAQAGAIPLFVELLEGTNPQGKEIAEDVFCXXXXXXXXXXXXXXHLVRILQGSNVEAKAAAADVVWDLSSYKHSVSVVRASGAIPXXXXXXXXXXXXXXXKASGAVAQLSYDRADRLALTEAGAVPIXXXXXXXXXXXXKDNAAEALINFSEDPSLRDMISQAFDVPAFRDIQQRLMRIQQSDEHTAHSLRYMGLEQ
F6HER8______________SWEESFELFEKVVASGRNAMQIRAIIKLARLSNSAPAHVLTRTVPILTRLL---GSSSSPSVQGASAYCLKCIAHQGDGDRMAILIGQYGAIPIALRLLQHSEGSFQRVLVKCLWSLVIFGKHNRVILVRNGGLEIIIRMLGSYTGRMRQYLLEILSALALLREVRRVIISLEGLRFLVQAVKFGGMASRERAAHAVGCLGVAKKARRVLVDLGAMHMLIELFREGDACTKLVAGNALGVISSHIHCIRPFAQAGAIPLYVELLRGHDPIGKEIAEDVFCVLAVAEVNAVAITEHLVEILRENDDVAKAAAADILWDLSSYHHSVSFIRNSGAIPIFVQLLRDRSSEVREKVSGAIAQLSYSAGDRAALAEAGAIPVLIDLLGDESEELRENAAEALISFSEDPSQRGIMSEAFRVTSFQEMQNRLVQIRSSDEYMARSLRQMSMEQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1101	20	80			0.995493
1103			80	20	0.995493
1383			88	11	0.923564
1533	80	20			0.995493
1653		66		16	0.988813
1811	72		27		1.0
1873		69		30	1.0
2023		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain