SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene961

Length: 3430 nt

UniGene Fasta

>sp_v3.0_unigene961
TCGTGTGGCCAAGCTCAGTCCGGTCCGCAGCCGAGAAATCCAAAATCCAGAAAACAAACAGGGACTACGGGTCGTAGAGATTCGAAGGAATTGAACCCCCTCTACATTTGCATTTGGATTTGAGACCCCGTTTTCTTACAAGAGGACTTTCGGAAGGCGCCACACGGCTCTCCTCCTCTTCGTCGACGGGCGGCCATGTGTGCCATTCAAGCATTCGTACTTCACAGGGGCGGATTCCAGAATTCTCCTCAGAGCCTCCGATTGCCGCCACAGCCTAGCGGGATAACTCGCGCAACAACATCTCTGGTATATTTAAGGTTCCAATCCCCAGCGCCTGATAAAAGGCTGAGCCATTCCACTTCTTTTTTGAAATTGAAACGCCTCTCGTCAAAACCAGTTGCTGCTAGGGCTTCGGTAGAGAGCCCCAACTCGAGTGAGGGAGAAGGAACTGGCGGTTTCGCGGCACGAAATGATATCGATAGCAGTAAAGGAGTCGTGGAGCAAGCGCAGCCGGGGTTATCTACGAACGGTGTTATTGAAGAAAGTCAAGCACAGCTGCTTATCGAGGGACATGGTACAGAAAATATCACTAGTGAAGTTAGGGTAGAAGATCGTACTGATAAACTGGAATCCGGTAATGAGGGACTGAGACTATCTGTTGCGGAAAAGAAATTAGTTTCAGAACAGGAAAGTAGCGGAGACAGAGTGGAGAAGACGGGAGATGGTGAGAAATTGAGTCTGCCGTTGTATTTGGCTAGATTTCTGGCACTGGTTTGGAAGAAGATGACTACTTTCTCCTTTTCTGATTGGCTCAGCTGGTGGCCGCTGTGGCAGCGGGAGAAGAGGTTAGAGCAACTCCTTGCGCAGGCGAACGCCAATCCGAGAGATGTTTCCAAGCAGAGCGCTCTTCTGGCAGAACTCAATAAGCACAGTCCTGAAGCTGTTATTAAGCGTTTTGAGCAAAGAGATCATGCCACAGATAGTCGGGCAGTTGCAGAATATCTTCGAGCACTCGTTGTTACAAATGCAATATCAGAGTATCTACCAGATGAACGTTCGGGCAAACCTTCCAGCCTTCCTGCACTGTTGTTAGAGTTAAAGCAGCGGGCATCTGGAAGTATGGATGAACCATTTTCAAACCCTGGCATGTCAGAGAAACATCCTCTTCACGTAGTTATGGTGGATCCTAAAGAAGCAAATAAATCGATGCGTTTTGCTCAGGAGCTTATTTCGACCATCTTATTTATGATTGTTTTTAGTTTGATGTGGGTCATGGGTGCAGCTGCACTCCGTAAGTATGTTAGCAGCTTAGGAGGAATTGGTTCATCTCCTGGTATAAGCACAGGTGCTTCATATACTCCCAAGGAGTACAATAAAGAAGTTCTGCCAGAGAAGAACTCCAAAACGTTTAAGGATGTCAAAGGATGTGATGAAGCAAAGCAAGAACTTGAAGAGGTTGTTGAGTATTTGAAGAACCCCTCAAAGTTTACACGTTTGGGTGGGAAGTTACCGAAGGGAATTCTGTTGACTGGTGCTCCTGGAACAGGAAAGACGCTTCTGGCCAAGGCAATTGCTGGAGAAGCTGGGGTTCCTTTTTTCTATCGTGCTGGTTCTGAATTTGAAGAGATGTTTGTTGGTGTTGGTGCGCGACGTGTGCGGTCTTTATTCCAAGCTGCAAAAAAAAAGGCACCTTGTATCATATTCATTGATGAAATTGATGCTGTTGGCTCTACTCGAAAACAATGGGAAGGTCATACAAAAAAAACTCCCCATCAGCTACTTGTTGAAATGGATGGCTTTGAGCAAAATGAGGGTATTATTTTGGTGGCTGCAACAAATTTGCCTGATGTGCTAGATCCGGCTCTGACAAGGCCTGGAAGATTTGACAGACACATTGTGGTTCCGAGTCCAGATGTTCGTGGTAGACAGGAAATTTTAGAGCTTTATTTGCAAAATAAGCCTCTGGCTGAAGATGTGAATGTGAAAGCCCTTGCGCGTGGTACACCTGGTTTCAATGGTGCAGATTTGGCAAACCTTGTCAACATTGCGGCCATCAAGGCAGCAGTTGATGGCAGTGAGAAGTTGTCTGCCAAACAGCTGGAATTTGCGAAGGATAGAATAATGATGGGAACAGAACGGAAGTCGATGTTCCTGTCAGAGGAGTCGAAAAAGCTCACAGCATACCATGAGAGTGGCCATGCAGTTGTTGCATTTAATACTGCAGGTGCGAACCCTATACACAAGGCTACAATCACTCCTCGAGGGAGTGCTCTTGGGATGGTTACACAGCTGCCTGACAAGGATGAAACATCTGTTAATAAAACGCAATTATTAGCACGACTTGATGTTTGTATGGGCGGACGAGTTGCAGAGGAGCTGATATTTGGTCAAGAGTATATTACAACTGGTGCAAGCAGTGATCTTGAGACAGCAACTGAGCTTGCTCAATACATGGTTTCAACATGTGGTATGAGTGATGCAATAGGACCAATTTACATAAAGGAACGACCTAGTGCAGGGATGCAATCCAAAATTGATGCAGAGGTTGTCAGAATTTTGAGGGAGGCATATGAGCGTGTCAAAACACTACTGAAAAAGCATGAAGCAGCATTGCATGCACTGGCAAAGGCTCTGTTGGAAAATGAAACACTGAATGCTCAAGAGATAGAAAGGATATTGAATCCTTTTCAGGGGAGAGGAGATCAGCAAGTGGAGGAAGTGGGGCAAGTGGAGCAAGCAGATCAAGTGGAACTTGCCATCAGCTGACTATTTTCTGTTGTACCATCTGCTTTCTTCAAAAGTTATATTTGTGACATTTGGGCTCTCTTCTGACTATAGAACACTGTAATCATTCTTTGAACAGGTGTATACCTACTGGATGGGCCTTGTGTATTGCAAGGGTAAAATATAGAACACGCCCACAATGTTCAGATACACAAAGATATTCTGTGACAAAGGATCTAGAACATTAGGCATAAGAAATCAACATTCAAAGCATACAGGGTATGGATTGTCCGAAAGTGTTGTCCTTTGAGGAGTAAATTGTAGCAAAGTCGTTTGCAAAGCATAGTATTGATTTGCATCCGATGTATGCAATAGTGTAATTAATTGTCCAGAATCTATCACATTGTGACTAAGCATCAGTCTGATTATCATCGTATTCCACATACATTTACTTTTGCAGGACAATGAGTTCAGTAGGCTCTCCCTCTGTTATGAAGAAATTGATTAGAATTGATGTCACTTCGGATACCATCTGCCCATGGTGCTTCGTTGGGAAGAAAAACTTGGAGAAAGCCATGGATGCTACCAAGGATCTCTACAACTTCGAGGTGAAGTGGCATCCTTTCATGCTTGATCCTAGTCTTCCCAAGGAAGGTCTGGATAAGAATGAATTTCATAGAAAGAAATTTGGGTCACGTGCCCAAAC

Ace file of the UniGene sp_v3.0_unigene961

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cell division protease ftsH-11 [Arabidopsis thaliana] sp\|Q9FGM0.1\|FTSHB_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; Short=AtFTSH11; Flags: Precursor dbj\|BAB08420.1\| cell division protein FtsH protease-like	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	-

Source	Gene names
Sma3	RCOM_1580380;

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Peptidase M41	IPR000642	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G53170.1	FTSH11 FTSH protease 11 chr5:21563023-21567922 REVERSE LENGTH=806	74%
RefSeq	Arabidopsis thaliana	NP_568787.1	cell division protease ftsH-11 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002317751.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: your sequence is longer than subject: 857 - 695

Fln protein: MCAIQAFVLHRGGFQNSPQSLRLPPQPSGITRATTSLVYLRFQSPAPDKRLSHSTSFLKLKRLSSKPVAARASVESPNSSEGEGTGGFAARNDIDSSKGVVEQAQPGLSTNGVIEESQAQLLIEGHGTENITSEVRVEDRTDKLESGNEGLRLSVAEKKLVSEQESSGDRVEKTGDGEKLSLPLYLARFLALVWKKMTTFSFSDWLSWWPLWQREKRLEQLLAQANANPRDVSKQSALLAELNKHSPEAVIKRFEQRDHATDSRAVAEYLRALVVTNAISEYLPDERSGKPSSLPALLLELKQRASGSMDEPFSNPGMSEKHPLHVVMVDPKEANKSMRFAQELISTILFMIVFSLMWVMGAAALRKYVSSLGGIGSSPGISTGASYTPKEYNKEVLPEKNSKTFKDVKGCDEAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTPHQLLVEMDGFEQNEGIILVAATNLPDVLDPALTRPGRFDRHIVVPSPDVRGRQEILELYLQNKPLAEDVNVKALARGTPGFNGADLANLVNIAAIKAAVDGSEKLSAKQLEFAKDRIMMGTERKSMFLSEESKKLTAYHESGHAVVAFNTAGANPIHKATITPRGSALGMVTQLPDKDETSVNKTQLLARLDVCMGGRVAEELIFGQEYITTGASSDLETATELAQYMVSTCGMSDAIGPIYIKERPSAGMQSKIDAEVVRILREAYERVKTLLKKHEAALHALAKALLENETLNAQEIERILNPFQGRGDQQVEEVGQVEQADQVELAIS*

Protein Length: 858

Fln nts: TCGTGTGGCCAAGCTCAGTCCGGTCCGCAGCCGAGAAATCCAAAATCCAGAAAACAAACAGGGACTACGGGTCGTAGAGATTCGAAGGAATTGAACCCCCTCTACATTTGCATTTGGATTTGAGACCCCGTTTTCTTACAAGAGGACTTTCGGAAGGCGCCACACGGCTCTCCTCCTCTTCGTCGACGGGCGGCC_-_ATGTGTGCCATTCAAGCATTCGTACTTCACAGGGGCGGATTCCAGAATTCTCCTCAGAGCCTCCGATTGCCGCCACAGCCTAGCGGGATAACTCGCGCAACAACATCTCTGGTATATTTAAGGTTCCAATCCCCAGCGCCTGATAAAAGGCTGAGCCATTCCACTTCTTTTTTGAAATTGAAACGCCTCTCGTCAAAACCAGTTGCTGCTAGGGCTTCGGTAGAGAGCCCCAACTCGAGTGAGGGAGAAGGAACTGGCGGTTTCGCGGCACGAAATGATATCGATAGCAGTAAAGGAGTCGTGGAGCAAGCGCAGCCGGGGTTATCTACGAACGGTGTTATTGAAGAAAGTCAAGCACAGCTGCTTATCGAGGGACATGGTACAGAAAATATCACTAGTGAAGTTAGGGTAGAAGATCGTACTGATAAACTGGAATCCGGTAATGAGGGACTGAGACTATCTGTTGCGGAAAAGAAATTAGTTTCAGAACAGGAAAGTAGCGGAGACAGAGTGGAGAAGACGGGAGATGGTGAGAAATTGAGTCTGCCGTTGTATTTGGCTAGATTTCTGGCACTGGTTTGGAAGAAGATGACTACTTTCTCCTTTTCTGATTGGCTCAGCTGGTGGCCGCTGTGGCAGCGGGAGAAGAGGTTAGAGCAACTCCTTGCGCAGGCGAACGCCAATCCGAGAGATGTTTCCAAGCAGAGCGCTCTTCTGGCAGAACTCAATAAGCACAGTCCTGAAGCTGTTATTAAGCGTTTTGAGCAAAGAGATCATGCCACAGATAGTCGGGCAGTTGCAGAATATCTTCGAGCACTCGTTGTTACAAATGCAATATCAGAGTATCTACCAGATGAACGTTCGGGCAAACCTTCCAGCCTTCCTGCACTGTTGTTAGAGTTAAAGCAGCGGGCATCTGGAAGTATGGATGAACCATTTTCAAACCCTGGCATGTCAGAGAAACATCCTCTTCACGTAGTTATGGTGGATCCTAAAGAAGCAAATAAATCGATGCGTTTTGCTCAGGAGCTTATTTCGACCATCTTATTTATGATTGTTTTTAGTTTGATGTGGGTCATGGGTGCAGCTGCACTCCGTAAGTATGTTAGCAGCTTAGGAGGAATTGGTTCATCTCCTGGTATAAGCACAGGTGCTTCATATACTCCCAAGGAGTACAATAAAGAAGTTCTGCCAGAGAAGAACTCCAAAACGTTTAAGGATGTCAAAGGATGTGATGAAGCAAAGCAAGAACTTGAAGAGGTTGTTGAGTATTTGAAGAACCCCTCAAAGTTTACACGTTTGGGTGGGAAGTTACCGAAGGGAATTCTGTTGACTGGTGCTCCTGGAACAGGAAAGACGCTTCTGGCCAAGGCAATTGCTGGAGAAGCTGGGGTTCCTTTTTTCTATCGTGCTGGTTCTGAATTTGAAGAGATGTTTGTTGGTGTTGGTGCGCGACGTGTGCGGTCTTTATTCCAAGCTGCAAAAAAAAAGGCACCTTGTATCATATTCATTGATGAAATTGATGCTGTTGGCTCTACTCGAAAACAATGGGAAGGTCATACAAAAAAAACTCCCCATCAGCTACTTGTTGAAATGGATGGCTTTGAGCAAAATGAGGGTATTATTTTGGTGGCTGCAACAAATTTGCCTGATGTGCTAGATCCGGCTCTGACAAGGCCTGGAAGATTTGACAGACACATTGTGGTTCCGAGTCCAGATGTTCGTGGTAGACAGGAAATTTTAGAGCTTTATTTGCAAAATAAGCCTCTGGCTGAAGATGTGAATGTGAAAGCCCTTGCGCGTGGTACACCTGGTTTCAATGGTGCAGATTTGGCAAACCTTGTCAACATTGCGGCCATCAAGGCAGCAGTTGATGGCAGTGAGAAGTTGTCTGCCAAACAGCTGGAATTTGCGAAGGATAGAATAATGATGGGAACAGAACGGAAGTCGATGTTCCTGTCAGAGGAGTCGAAAAAGCTCACAGCATACCATGAGAGTGGCCATGCAGTTGTTGCATTTAATACTGCAGGTGCGAACCCTATACACAAGGCTACAATCACTCCTCGAGGGAGTGCTCTTGGGATGGTTACACAGCTGCCTGACAAGGATGAAACATCTGTTAATAAAACGCAATTATTAGCACGACTTGATGTTTGTATGGGCGGACGAGTTGCAGAGGAGCTGATATTTGGTCAAGAGTATATTACAACTGGTGCAAGCAGTGATCTTGAGACAGCAACTGAGCTTGCTCAATACATGGTTTCAACATGTGGTATGAGTGATGCAATAGGACCAATTTACATAAAGGAACGACCTAGTGCAGGGATGCAATCCAAAATTGATGCAGAGGTTGTCAGAATTTTGAGGGAGGCATATGAGCGTGTCAAAACACTACTGAAAAAGCATGAAGCAGCATTGCATGCACTGGCAAAGGCTCTGTTGGAAAATGAAACACTGAATGCTCAAGAGATAGAAAGGATATTGAATCCTTTTCAGGGGAGAGGAGATCAGCAAGTGGAGGAAGTGGGGCAAGTGGAGCAAGCAGATCAAGTGGAACTTGCCATCAGCTGA___CTATTTTCTGTTGTACCATCTGCTTTCTTCAAAAGTTATATTTGTGACATTTGGGCTCTCTTCTGACTATAGAACACTGTAATCATTCTTTGAACAGGTGTATACCTACTGGATGGGCCTTGTGTATTGCAAGGGTAAAATATAGAACACGCCCACAATGTTCAGATACACAAAGATATTCTGTGACAAAGGATCTAGAACATTAGGCATAAGAAATCAACATTCAAAGCATACAGGGTATGGATTGTCCGAAAGTGTTGTCCTTTGAGGAGTAAATTGTAGCAAAGTCGTTTGCAAAGCATAGTATTGATTTGCATCCGATGTATGCAATAGTGTAATTAATTGTCCAGAATCTATCACATTGTGACTAAGCATCAGTCTGATTATCATCGTATTCCACATACATTTACTTTTGCAGGACAATGAGTTCAGTAGGCTCTCCCTCTGTTATGAAGAAATTGATTAGAATTGATGTCACTTCGGATACCATCTGCCCATGGTGCTTCGTTGGGAAGAAAAACTTGGAGAAAGCCATGGATGCTACCAAGGATCTCTACAACTTCGAGGTGAAGTGGCATCCTTTCATGCTTGATCCTAGTCTTCCCAAGGAAGGTCTGGATAAGAATGAATTTCATAGAAAGAAATTTGGGTCACGTGCCCAAAC

Fln Alignment:

Contig961___TFKDVKGCDEAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTPHQLLVEMDGFEQNEGIILVAATNLPDVLDPALTRPGRFDRHIVVPSPDVRGRQEILELYLQNKPLAEDVNVKALARGTPGFNGADLANLVNIAAIKAAVDGSEKLSAKQLEFAKDRIMMGTERKSMFLSEESKKLTAYHESGHAVVAFNTAGANPIHKATITPRGSALGMVTQLPDKDETSVNKTQLLARLDVCMGGRVAEELIFGQEYITTGASSDLETATELAQYMVSTCGMSDAIGPIYIKERPSAG---------------MQSKIDAEVVRILREAYERVKTXXXXXXXXXXXXXXXXXXNETLNAQEIERILNPF
C0PQ75_____________TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSLGVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEIDDSIDRIVAGME-GTIMTDGKNKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPGDDPTLISRQQLFARIVGGLGGRAAEQVIFGESEVTTGAASDLQMVTSMAKQMVTVFGMSE-IGPWSLMDAAQSGDVIMRMMARNSMSEKLAEDIDEAVKSLSDQAYEVALGHIRNNRAAIDKIVEVLLEKETMTGDEFRALLSEF

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
909	20			80	0.995493
910	20	80			0.995493
1254	12			87	0.992554
1393	80		20		0.995493
1511		11		88	0.923564
1528	12		87		0.992554
1559	12	87			0.992554
1630		16	83		0.994512
2236	14		85		0.993533
2279	16	83			0.994512
2281			16	83	0.994512
2317	83		16		0.994512
2318		16		83	0.994512
2319	16	83			0.994512
2321			83	16	0.994512
2332	20		80		0.995493
2368	80		20		0.995493
2454	90			10	0.90298
2488	90		10		0.90298
2747			90	10	0.90298
2748	90		10		0.90298
2749			10	90	0.90298
2750		90	10		0.90298
2893		20		80	1.0
3058	85		14		0.999981
3087		5	94		0.997984

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain