SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene933

Length: 1042 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene933

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana] sp\|Q8L751.1\|ORP1C_ARATH RecName: Full=Oxysterol-binding protein-related protein 1C; AltName: Full=OSBP-related protein 1C gb\|AAM98072.1\| AT4g08180/T12G13_20 [Arabidopsis thaliana] g	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Putative oxysterol-binding protein	-	-	4.876e-18	-

Source	Gene names
Sma3	AT4g08180; AT4g12460; AT4g22540; At1g13170; At2g31020; At2g31030; At4g08180; At4g12460; At4g22540; F3F19.19; GSVIVT00007314001; GSVIVT00007315001; GSVIVT00009629001; GSVIVT00012103001; GSVIVT00015325001; GSVIVT00019243001; GSVIVT00030711001; GSVIVT0003071

Source	GOs	Term	Type	e value	Identity
Sma3	steroid metabolic process	GO:0008202	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Oxysterol-binding protein	IPR000648	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G08180.1	ORP1C OSBP(oxysterol binding protein)-related protein 1C chr4:5169727-5173360 FORWARD LENGTH=814	61%
RefSeq	Arabidopsis thaliana	NP_192558.2	OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002314577.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLZ0

Fln msg: Distance to subject end: 304 aas, your sequence is shorter than subject: 346 - 785

Fln protein: EALESFLWSKLAEYLLPKRVSSVRESKSDDKRFSIFTGTKTLHLRTESREDRAAWVEALSASKDFFPRILTRSLLVPIEDIQISTENLRHRLLQEGVNEVVVKDCEQIMLSEFFELQKQLNILQQKQFYLMDTLRQLEAEKVELETTVVDETQCWSKEQDASGGSGNGRYSEGTATESDEEIESQDGVDGETDEDDDTFFDTKEFLSSHSMRSMSSGYTHRSVDPCEEILDDKQFLRSASVNGIDADIEMIGLNYPHVERRKKLPEPLEKEKAVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLIDQASEWGKRGNSLMRILTVAAFAVSGYAS

Protein Length: 347

Fln nts: GAGAGGCTCTGGAGAGTTTTTTGTGGAGCAAACTTGCCGAATATCTGCTTCCAAAGAGGGTCTCCTCTGTCCGAGAGAGTAAGTCAGATGATAAAAGGTTCTCAATTTTCACTGGTACAAAGACACTACATTTGCGGACTGAATCTAGAGAGGACCGAGCTGCATGGGTAGAAGCATTATCAGCTTCAAAAGACTTTTTTCCTCGCATCTTGACAAGAAGCCTTCTAGTACCGATTGAAGATATCCAGATTTCAACAGAGAATCTCAGACATCGCCTATTGCAAGAAGGGGTGAATGAAGTAGTAGTCAAGGATTGTGAGCAGATCATGCTGTCTGAATTTTTTGAGTTGCAAAAACAACTAAATATTCTACAACAGAAACAATTTTATCTAATGGACACATTGAGGCAATTAGAGGCAGAAAAAGTAGAGCTAGAAACTACAGTTGTTGATGAAACTCAATGTTGGTCAAAGGAGCAAGATGCATCTGGTGGATCTGGGAATGGAAGGTATAGCGAAGGGACTGCAACAGAATCAGATGAAGAAATTGAAAGTCAAGACGGCGTGGATGGAGAAACAGATGAAGATGATGACACATTTTTTGACACAAAGGAATTTTTATCATCGCATTCTATGAGAAGCATGAGTTCTGGATACACACACAGATCAGTAGATCCATGTGAGGAGATTCTAGATGATAAACAGTTTCTTCGCTCAGCTTCTGTGAATGGCATAGATGCAGACATAGAAATGATTGGACTCAATTATCCTCATGTGGAAAGGAGAAAGAAGTTGCCTGAACCATTGGAAAAGGAGAAAGCGGTTGGTCTCTGGTCAATTATAAAAGACAATATTGGAAAGGATCTTTCTGGAGTTTGTCTTCCAGTGTACTTTAATGAACCACTTTCTTCTTTGCAAAAATGCTTTGAAGATTTGGAATATTCATACCTGATTGACCAAGCGTCGGAATGGGGAAAACGGGGGAACAGCCTGATGAGGATCCTAACTGTAGCAGCATTTGCAGTTTCCGGATATGCTTCCAC

Fln Alignment:

Contig933___RVSSVRESKSDDKRFSIFTGTKTLHLRTESREDRAAWVEALSASKDFFPRILTRSLLVPIEDIQISTENLRHRLLQEGVNEVVVKDCEQIMLSEFFEXXXXXXXXXXXXFYLMDTLRQLEAEKVELETTVVDETQCWSKEQDASGGSGNGRYSEGTATESDEEIESQXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXGYTHRSVDPCEEILDDKQFLRSASVNGIDADIEMIGLNYPHVXXXXXXXXXXXXXXAVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLIDQASEWGKRGNSLMRILTVAAFAVSGYAS
B8LLZ0_____________KVSSIRESRSDDKRFSVFTGTKRLHLRAESREDRAAWIEALQAAKDLFPHISINDLMSPIENITVSTEKLRCRLLEAGLSEAAIQESEQIMMAEFSVLQNQLNLLQQKQFRLLETLRQLETEKFDLETKVVDESQHRSKHVSSSK-SRNGKYSEGSVTDSDDDNERQDGPEEESDEDESTYFDTREFLSSNSLRRTDSGHRRSSVD------SDEGLALSNSRFGVDVDMQMVGFDHPYVQRRKNLPEPKEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAYEWGKRGNNLMRILNVAAFAVSGYAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain