SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene878

Length: 1323 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene878

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEMETER protein [Arabidopsis thaliana]	-	-	0.0	41%
FL-Next	sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Sma3	Repressor of silencing 1	-	-	6.505e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Glycosylases, Hydrolyzing N-glycosyl compounds.	EC:3.2.2.-	-	9.944e-07	-

Source	Gene names
Sma3	At2g36490; At5g04560/At5g04570/At5g04580; DME; DML1; DNG701; DNG901; DNG902; F1O11.12; GSVIVT00021675001; GSVIVT00022089001; GSVIVT00022090001; GSVIVT00034990001; MtrDRAFT_AC152184g6v2; NtROS1; NtROS2a; NtROS2b; Os01g0217900; Os05g0445900; OsI_00912; OsI_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	DNA-(apurinic or apyrimidinic site) lyase activity	GO:0003906	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	DNA N-glycosylase activity	GO:0019104	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	base-excision repair	GO:0006284	Biological Process	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	negative regulation of chromatin silencing	GO:0031936	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8LK56

Fln msg: your sequence is shorter than subject: 415 - 1987

Fln protein: EPLPESVQIHLLEQYPVLDSIQRYLWPRLCTLDQRTLYELHYQLMSFRKGFLYQKQAKL*RMSNEVSVQTLCKCMCKRKACPSSST**IFITTNFFIQSVFPTKLGSTGSPTKLFIQYAISTKFGSPKQHASS*THSTATYDTRFQHSAGVFTIKFSDPKL*TNN*RARNTRT*VCRQL*NSSA*ITCYRG**NSHHQLEL**L*STT*SIQQHPLFRRWGCIDNIEGSSDCTT*SCFNTCTQAKKYRSTAD*ASSI*TSR*SSAFK*A*S*RTR*PMLLSSCHMESR*NVRKRRRNRTTLLRCKYNGRFSMYK*NLQFMY*YERS**QINQRHIVDTFADHWIWNLRRRTVYFGTSIPSIFKGLTAEAIQACFWKGYVCVRGFERKVRAPRPLTARLHFPASKREKSQKKTAA*

Protein Length: 416

Fln nts: TGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCTAGAACAGTATCCTGTTTTGGATTCCATCCAAAGATATTTATGGCCTCGATTATGTACTCTTGATCAACGAACACTATATGAACTCCACTACCAATTGATGAGCTTTCGGAAAGGTTTTTTGTACCAAAAGCAGGCCAAATTGTAACGCATGTCCAATGAGGTTTCAGTGCAAACACTTTGCAAGTGCATGTGCAAGCGCAAAGCCTGCCCTTCCAGCTCCACATGATGAATTTTCATCACAACAAATTTCTTCATTCAATCTGTCTTCCCAACAAAACTTGGATCCACTGGCTCTCCCACCAAATTATTCATTCAGTATGCCATATCAACAAAATTTGGATCTCCTAAGCAACATGCTAGCTCTTGAACCCATTCAACAGCAACATATGACACCAGATTCCAGCATTCTGCAGGAGTTTTTACCATCAAATTTTCAGATCCAAAATTATGAACCAATAATTGAAGAGCCCGCAACACCAGAACATGAGTATGTAGACAGCTTTGAAACTCCAGCGCTTGAATCACCTGCTACAGAGGATGATGAAATTCCCACCATCAACTTGAGTTATGATGACTGTGAAGTACAACATAATCCATACAACAGCATCCATTGTTCAGAAGGTGGGGATGCATTGACAATATCGAGGGCTCTAGTGACTGTACCACCTGAAGCTGCTTCAATACCTGTACCCAAGCTAAAAAATATAGGTCGACTGCGGACTGAGCATCGAGTATATGAACTTCCAGATAGTCATCAGCTTTTAAGTGAGCTTGATCCTAGAGAACCAGATGACCCATGCTTTTATCTTCTTGCCATATGGAGTCCAGATGAAATGTTAGAAAAAGGAGAAGAAACAGAACCACATTGCTGCGCTGCAAATACAATGGACGATTCTCCATGTACAAATGAAATTTGCAGTTCATGTACTAATATGAGAGATCTTAATGACAAATCAATCAAAGGCACATTGTTGATACCTTTGCTGATCACTGGATTTGGAATTTGCGTCGTCGAACGGTTTACTTTGGTACATCAATTCCAAGTATCTTCAAGGGTCTCACCGCAGAGGCAATACAAGCGTGCTTTTGGAAAGGATATGTCTGCGTAAGAGGCTTTGAGCGTAAGGTGCGAGCTCCACGACCACTGACAGCAAGGCTACACTTTCCTGCAAGCAAGAGAGAGAAATCTCAAAAAAAGACAGCAGCATAA___AGAGGCAAAAAAAGTAAGGCATGAATATGTAACTGTAAAGTTACAAATGCCAAACAAGTGAAGTATCTCAATGATAT

Fln Alignment:

Contig878___EPLPESVQIHLLEQYPVLDSIQRYLWPRLCTLDQRTLYELHYQLMSFRKGF
Q8LK56_____________QPLPESLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
657	20		80		0.995493
767	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain