SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene874

Length: 1159 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene874

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Structural molecule, putative n=1 Tax=Ricinus communis RepID=B9SRI7_RICCO	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%

Source	Gene names
Sma3	At3g26070; At3g26080; CHLREDRAFT_205881; FIB3; GSVIVT00026573001; GSVIVT00026576001; LOC_Os03g49720; MICPUCDRAFT_18871; MICPUN_72116; MPE11.24; MPE11.25; MtrDRAFT_AC157375g30v1; OSJNBa0004L11.4; OSTLU_29825; Os03g0704100; OsI_13198; OsJ_12270; Ot02g07090;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	alanine-tRNA ligase activity	GO:0004813	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	alanyl-tRNA aminoacylation	GO:0006419	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein chr3:9526904-9528199 FORWARD LENGTH=242	66%
RefSeq	Arabidopsis thaliana	NP_189236.3	putative plastid-lipid-associated protein 4 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002299674.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN63

Fln msg: your sequence is shorter than subject: 249 - 277

Fln protein: MESMAGKCFYHPLQSAVPLNESNTRLAWVRPSKVCRIRNNVSFSKIGFGSGIGRPLKAQVQAQASLFPFLNKRKDTTVVKEELLEAIGPLDRGAEATPEDKYRVDQIAQELEVINPTKEPLQSPLLNGKWELLYTTSATILKSQRPKFLRPNGKIYQAINADTLRAQNLETWPFFNQVTANLTPLSGKKVAVKFDKFKIASLISIKAPDRARGELEITYVDDELRISRGDKGNLFILRMVDPTYRVPL*

Protein Length: 250

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCACTTGATTTGTTTCGTCCACACATTGTTCAGTATAGCTGCCTGTGTTATGTCCGTGTCACTACTTTTATTCAATC_-_ATGGAAAGCATGGCCGGCAAATGTTTTTATCACCCACTTCAATCTGCTGTACCTCTAAATGAATCGAATACCAGATTAGCCTGGGTTCGGCCATCAAAGGTGTGCAGAATTAGAAATAACGTAAGCTTCAGCAAGATAGGTTTTGGTTCTGGTATTGGACGGCCTTTAAAGGCGCAGGTGCAGGCACAGGCATCTCTGTTTCCCTTCCTAAACAAGAGAAAAGACACAACTGTTGTGAAAGAGGAGCTGTTGGAAGCCATCGGACCATTGGACAGGGGGGCTGAAGCAACTCCCGAGGACAAGTACCGCGTCGATCAGATTGCACAGGAACTAGAAGTGATTAATCCAACTAAAGAACCTCTTCAGTCTCCCTTGTTAAATGGAAAATGGGAGCTTTTGTACACTACTTCAGCGACAATTCTAAAGAGTCAGCGACCAAAATTTTTAAGGCCAAATGGGAAAATCTATCAAGCAATCAATGCTGATACTCTTAGAGCTCAAAATTTGGAGACTTGGCCTTTCTTTAATCAGGTAACGGCAAATTTAACCCCTCTCAGTGGAAAGAAGGTAGCAGTAAAATTTGACAAGTTCAAGATTGCCAGCTTGATAAGTATAAAGGCACCTGATCGAGCTCGAGGGGAGTTAGAAATCACATATGTTGATGATGAATTGAGGATTTCTCGTGGTGACAAGGGCAATTTATTTATATTACGCATGGTTGATCCTACTTATAGAGTTCCATTATAG___AACCCCATTTGATCTGATGTGCTAATAAATTTTTGTTTACTTTCCTTGAATTGAAGATTGTTAAAAGAAGCAACTTTGAAAAACTTTAGTTCCACCTTTCTATTTAAGAAGCTTGTAAAAGGTGGAGTTGCCTGATTGGAATTTTATTTTTCTTAAAGTGTAAGTTCCCAACATAATAGAGATGATGACTTAGTTCTACAAATCTTAATTTTACAAGATGGTATTGTTTTATGTTTGTAGGCCCCTTTGTTTTGTTTCTTTGATCAATTGAGAGAACAGATGGTAAAGCTAGAACATAA

Fln Alignment:

Contig874___KDTTVVKEELLEAIGPLDRGAEATP-EDKYRVDQIAQELEVINPTKEPLQS-PLLNGKWELLYTTSATILKSQRPKF-LRPN---GKIYQAINADTLRAQNLETWPFFN--------QVTANLTPLSGKKVAVKFDKFKIAS-------------LISIKAPDRARGELEITYVDDELRISRGDKGNLFILRMV
B8LN63_____________RSTDQLKTALKNSLQGLNRGVFGVPVAKKAEIEKLLMLLEEQNSVPNPTENLQMVEGQWKLLYST-ITILGSKRTKLGLRDFINLGEFVQTINTKEGKAENKIGFSVTGLGMLSGELTIEASFKIASPKRVDIQFEKSAIVPETLLNLFRKNYDILLSIFNP---QGWLEITYVDSITRIGRDDKGNVFLLERV

SNPs (tot: 4)

Position	A %	G %	T %	Probability
471	42	57		1.0
1088	14	85		0.993533
1089	14		85	0.993533
1090		14	85	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain