SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene839

Length: 2293 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene839
ACATGGGGAAAGACAAACGAATTAAGAGAAACGGAAAGCAAGAATAAAACCCACGGAGGATAGACAGTCGGGCTTTGGATGGAAAAAAATTGTTCTCTGCAGGACGGACGAACTGTAATTCTCCACTCACAAATGGCCTCCTCGCTCTGTGATCTCCATCACAATCAAACGACATCATATTGGCCATGCATTTCTGCACAGGTTAGGCTTACTGCATATACAGTAAACGGGCAAACAATGAGATCAATGCTAAATCTTCAACACAGAGCATTGGGTTCGTCTCACTCTGCTTATTTTGGAGGAGCAGTATTTAGTCCTTTGCAGCCAAATTATCTAGCCCGCGGTCACTTGAGAGCAAGACTCTGGGTAGTGAGAGCTGCTAGTAGCAGACGGGACAGCCAGCAGTTCTACTACAAGCCAGAGAGCATGAAGGCTGTCGCCCCAACTGCCAGTGGCAAATTCATTGGATTTGCTGTAGGTGCTGGGCTGGTCTTAGCTGTTGTTTTCGCTTTGGTTAAGCTCACAGGTACATTATTCAATGCTGCAACCTCCAATATGGTTTCCACTGGTATTGACTTGCCATTTTCTTCTGGAAGTAATAAACTAGAGCGACGATCAAGGGACCGTCTCGGTGATTTTGCGAGAGAACTTCGATTGCTCAGGGGTGTTGACATGTCAGGCCGCAATTTTGGTGATGAGGGAATAATATTTTTGGCTGAAAGTTTAGCATTCAATCAGACTGCAGAAGAGGTAGATTTTTCAGCAAATGGCATAACAGCTGTGGGTTTGAAAGCACTTTCGGATGTTCTACCTTTGAATGACTTTTTAAAGGCGCTTAATCTCTCTGGCAATCCAGTTGGTGATGAAGGAGCTAAGGGTATTTCAGTTATGCTAGAGAAGAACCGAGGTCTCCTGAAGCTTCAGCTAAACAGTGCTAATATTGGAGATGAGGGTGCTAAGGCTCTTGCAGAAATGCTGAAAAAGAATAGCTGCTTATCCGTTATAGAGCTCAACAACAACATGATTGATTATTCTGGATTTTCGGCTCTGGCTGAAGCTTTGATTGAAAATAAGACAATTCGAGCCATACATCTGAATGGGAATTATGGTGGTGCTCTTGGAGCGTCTGCTTTTGCAAAAGGACTTGAAGTGAACAAATCTTTGAGGGAAGTCCACCTACATGGAAATGGTATTGGGAACGAGGGTGCTCGGGCATTGATATCGGGCTTAGTTGCCCATAGAGGAAAGATTACTACTGTTGACATTGGAAATAATAGCATTGGTTCAAAAGGTGCATTTCATATAGCAGAATATATCAAAAAGTGCAAAAGCTTATTATGGCTTAATCTGTACATGAATGATATTGGTGACGAGGGCACAGAGAAAATTGCAAAGGCTCTGCAACAGAATAGAACACTGACAACTATTGACTTGGGAGGAAATAACATTCACGCTGATGGTGCTAGTCATCTTGCAGAAGCCCTCAAAGATAACAGTGTCCTCACAACATTGGAACTTAGCTACAACCCTATTGGTCCAGAAGGAGTAAAGGCCTTAGCTGAAGTTCTTAAATTCTCTGGCAACATTCAAACTCTTAAACTAGGATGGTGCCAGATAGGTGTTAAAGGTGTAGAACATATAGCAGAAGCGTTGAAGTACAATACAACTATTTCCACACTAGACCTGCGTGCCAATGGTCTAGGTGATGACGGTGCAGCTTCCTTGGCTCGGAGCTTAAAAGTTGTGAATGAGACTTTAACATCATTGGATCTAGGATTCAATGAAATCAGGGATAGGGGTGCCTTTGCTCTAGCTCAAGCACTAAAGGCTAATGAAGACCCTGCTCTCAGTTCGATTAATTTGGCAAGTAACTTCCTAACCAAATATGGACAGGTGGCATTGACTGAAGCCAAGGACCACATTAGTGAAGTGCATGATGGTAGGGAGGTGAACATATATTTTTAATTCGTAAGGTGCCAATCAATTTTGTAGAATAGTTAGCCTATCTAGAGCATCCACTTCCGGCGGGATCTCATTGTAGGGAATCTAAACCTGAAATTTTCAGCATCCCATTGTACAATTGCTTGCTCTTGATTCCCCTTGAAGTGCATTTCAGGGGTTTGAGTTATACCTATTCTTTTCCTCCATCCTTCTGCAGTTTTAGCTGGTTATGTATTCATCAAATAAGCATAACAGAATGTATGGAATTTAAGGAGCAAGACAGCTATTGTAAACTGTAAAAGCAAAAAATAATGATTATTTTTTAATTGGAAATATTTCCCAATATTTACAG

Ace file of the UniGene sp_v3.0_unigene839 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%

Source	Gene names
Sma3	At1g10510; CHLREDRAFT_170113; GSVIVT00028885001; MICPUCDRAFT_70233; MICPUN_93055; OSJNBa0068B06.9; OSTLU_34199; Os06g0237400; OsI_22316; OsJ_20746; Ot03g00680; PHYPADRAFT_128227; POPTRDRAFT_721160; RCOM_0699930; VITISV_031253;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Leucine-rich repeat, ribonuclease inhibitor subtype	IPR003590	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10510.1	emb2004 RNI-like superfamily protein chr1:3461771-3465590 FORWARD LENGTH=605	65%
RefSeq	Arabidopsis thaliana	NP_563871.1	leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002311795.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HPK8

Fln msg: your sequence is longer than subject: 629 - 500

Fln protein: MEKNCSLQDGRTVILHSQMASSLCDLHHNQTTSYWPCISAQVRLTAYTVNGQTMRSMLNLQHRALGSSHSAYFGGAVFSPLQPNYLARGHLRARLWVVRAASSRRDSQQFYYKPESMKAVAPTASGKFIGFAVGAGLVLAVVFALVKLTGTLFNAATSNMVSTGIDLPFSSGSNKLERRSRDRLGDFARELRLLRGVDMSGRNFGDEGIIFLAESLAFNQTAEEVDFSANGITAVGLKALSDVLPLNDFLKALNLSGNPVGDEGAKGISVMLEKNRGLLKLQLNSANIGDEGAKALAEMLKKNSCLSVIELNNNMIDYSGFSALAEALIENKTIRAIHLNGNYGGALGASAFAKGLEVNKSLREVHLHGNGIGNEGARALISGLVAHRGKITTVDIGNNSIGSKGAFHIAEYIKKCKSLLWLNLYMNDIGDEGTEKIAKALQQNRTLTTIDLGGNNIHADGASHLAEALKDNSVLTTLELSYNPIGPEGVKALAEVLKFSGNIQTLKLGWCQIGVKGVEHIAEALKYNTTISTLDLRANGLGDDGAASLARSLKVVNETLTSLDLGFNEIRDRGAFALAQALKANEDPALSSINLASNFLTKYGQVALTEAKDHISEVHDGREVNIYF*

Protein Length: 630

Fln nts: ACATGGGGAAAGACAAACGAATTAAGAGAAACGGAAAGCAAGAATAAAACCCACGGAGGATAGACAGTCGGGCTTTGG_-_ATGGAAAAAAATTGTTCTCTGCAGGACGGACGAACTGTAATTCTCCACTCACAAATGGCCTCCTCGCTCTGTGATCTCCATCACAATCAAACGACATCATATTGGCCATGCATTTCTGCACAGGTTAGGCTTACTGCATATACAGTAAACGGGCAAACAATGAGATCAATGCTAAATCTTCAACACAGAGCATTGGGTTCGTCTCACTCTGCTTATTTTGGAGGAGCAGTATTTAGTCCTTTGCAGCCAAATTATCTAGCCCGCGGTCACTTGAGAGCAAGACTCTGGGTAGTGAGAGCTGCTAGTAGCAGACGGGACAGCCAGCAGTTCTACTACAAGCCAGAGAGCATGAAGGCTGTCGCCCCAACTGCCAGTGGCAAATTCATTGGATTTGCTGTAGGTGCTGGGCTGGTCTTAGCTGTTGTTTTCGCTTTGGTTAAGCTCACAGGTACATTATTCAATGCTGCAACCTCCAATATGGTTTCCACTGGTATTGACTTGCCATTTTCTTCTGGAAGTAATAAACTAGAGCGACGATCAAGGGACCGTCTCGGTGATTTTGCGAGAGAACTTCGATTGCTCAGGGGTGTTGACATGTCAGGCCGCAATTTTGGTGATGAGGGAATAATATTTTTGGCTGAAAGTTTAGCATTCAATCAGACTGCAGAAGAGGTAGATTTTTCAGCAAATGGCATAACAGCTGTGGGTTTGAAAGCACTTTCGGATGTTCTACCTTTGAATGACTTTTTAAAGGCGCTTAATCTCTCTGGCAATCCAGTTGGTGATGAAGGAGCTAAGGGTATTTCAGTTATGCTAGAGAAGAACCGAGGTCTCCTGAAGCTTCAGCTAAACAGTGCTAATATTGGAGATGAGGGTGCTAAGGCTCTTGCAGAAATGCTGAAAAAGAATAGCTGCTTATCCGTTATAGAGCTCAACAACAACATGATTGATTATTCTGGATTTTCGGCTCTGGCTGAAGCTTTGATTGAAAATAAGACAATTCGAGCCATACATCTGAATGGGAATTATGGTGGTGCTCTTGGAGCGTCTGCTTTTGCAAAAGGACTTGAAGTGAACAAATCTTTGAGGGAAGTCCACCTACATGGAAATGGTATTGGGAACGAGGGTGCTCGGGCATTGATATCGGGCTTAGTTGCCCATAGAGGAAAGATTACTACTGTTGACATTGGAAATAATAGCATTGGTTCAAAAGGTGCATTTCATATAGCAGAATATATCAAAAAGTGCAAAAGCTTATTATGGCTTAATCTGTACATGAATGATATTGGTGACGAGGGCACAGAGAAAATTGCAAAGGCTCTGCAACAGAATAGAACACTGACAACTATTGACTTGGGAGGAAATAACATTCACGCTGATGGTGCTAGTCATCTTGCAGAAGCCCTCAAAGATAACAGTGTCCTCACAACATTGGAACTTAGCTACAACCCTATTGGTCCAGAAGGAGTAAAGGCCTTAGCTGAAGTTCTTAAATTCTCTGGCAACATTCAAACTCTTAAACTAGGATGGTGCCAGATAGGTGTTAAAGGTGTAGAACATATAGCAGAAGCGTTGAAGTACAATACAACTATTTCCACACTAGACCTGCGTGCCAATGGTCTAGGTGATGACGGTGCAGCTTCCTTGGCTCGGAGCTTAAAAGTTGTGAATGAGACTTTAACATCATTGGATCTAGGATTCAATGAAATCAGGGATAGGGGTGCCTTTGCTCTAGCTCAAGCACTAAAGGCTAATGAAGACCCTGCTCTCAGTTCGATTAATTTGGCAAGTAACTTCCTAACCAAATATGGACAGGTGGCATTGACTGAAGCCAAGGACCACATTAGTGAAGTGCATGATGGTAGGGAGGTGAACATATATTTTTAA___TTCGTAAGGTGCCAATCAATTTTGTAGAATAGTTAGCCTATCTAGAGCATCCACTTCCGGCGGGATCTCATTGTAGGGAATCTAAACCTGAAATTTTCAGCATCCCATTGTACAATTGCTTGCTCTTGATTCCCCTTGAAGTGCATTTCAGGGGTTTGAGTTATACCTATTCTTTTCCTCCATCCTTCTGCAGTTTTAGCTGGTTATGTATTCATCAAATAAGCATAACAGAATGTATGGAATTTAAGGAGCAAGACAGCTATTGTAAACTGTAAAAGCAAAAAATAATGATTATTTTTTAATTGGAAATATTTCCCAATATTTACAG

Fln Alignment:

Contig839___STGIDLPFSSGSN-------KLERRSRDRLGDFARELRLLRGVDMSGRNFGDEGIIFLAESLAFNQTAEEVDFSANGITAVGLKALSDVLPLNDFLKALNLSGNPVGDEGAKGISVMLEKNRGLLKLQLNSANIGDEGAKALAEMLKKNSCLSVIELNNNMIDYSGFSALAEALIENKTIRAIHLNGNYGGALGASAFAKGLEVNKSLREVHLHGNGIGNEGARALISGLVAHRGKITTVDIGNNSIGSKGAFHIAEYIKKCKSLLWLNLYMNDIGDEGTEKIAKALQQNRTLTTIDLGGNNIHADGASHLAEALKDNSVLTTLELSYNPIGPEGVKALAEVLKFSGNIQTLKLGWCQIGVKGVEHIAEALKYNTTISTLDLRANGLGDDGAASLARSLKVVNETLTSLDLGFNEIRDRGAFALAQALKANEDPALSSINLASNFLTKYGQVALTEAKDHISEVHDGREVNIYF
F6HPK8_____________SPGVKWSFAPGTNLLAGLTAKFDRESKQKLNEFAKEIRSFGSVDMSGRNFGDEGLFFLAESLAYNQNAEEVSFAANGITAAGLKAFDGVLQSNIVLKTLDLSGNPIGDEGAKCLCDILIDNAGIQKLQLNSADLGDEGAKAIAEMLKKNSSLRIVELNNNMIDYSGFTSLGGALLENNTIRNIHLNGNYGGALGVAALAKGLEANKSLRELHLHGNSIGDEGVRVLMSGLSSHKGKLTLLDIGNNEISSRGAFHVAEYIKKAKSLLWLNLYMNDIGDEGAEKIADALKENRSIATIDLGGNNIHAKGVSKIAGVLKDNTVITTLELGYNPIGPEGAKALSEVLKFHGKIKTLKLGWCQIGAKGAEFIADTLKYNTTISTLDLRANGLRDEGAVCLARSMKVVNEALASLDLGFNEIRDEGAFAIAQALKANEDVAVTSLNLASNFLTKFGQSALTDARDHVYEMSE-KEVNIFF

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
322	66		33		0.997452
337	85			14	0.993533
338	71		14		0.984337
374	57			42	1.0
484		85		14	0.993533
485			14	85	0.993533
487		14	85		0.993533
491	85	14			0.993533
499		85	14		0.993533
500	14	85			0.993533
502			14	85	0.993533
551	12	87			0.992554
553		87		12	0.992554
554	87		12		0.992554
555	87			12	0.992554
579	42		57		1.0
653	11			88	0.923564
654		11	88		0.923564
655	11	88			0.923564
657	88			11	0.923564
677	60			40	1.0
878	14	85			0.993533
926	28		71		1.0
1019	14		85		0.993533
1039		66	33		1.0
1061	25		75		1.0
1260		83	16		0.994512
1261		83		16	0.994512
1955			75	25	0.996473
2085			71	28	1.0
2135	22		77		0.999999
2143			87	12	0.992554
2191		75		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain