SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene830

Length: 2015 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene830
TGTTGAGTTGTTACCGTTTCTACTAGACAAGTTTGGACGACTGTGCCAAACAGGTCCTTGTCAGCGACTTAGCAGGGGCAGGATAGAGGAATTTTGGGTTCATGTAGGTAACTCACCAGCTTTCTAGCTTGATATAGCTTCACTCCTCTCAGCCCAGTCCTACATTCTTCTGCTGTGAATGCTCATTTCGTTGAAATGATTATTGGGTCCATCATTTGAGCAGAATCTCCTCTGCCCATTTGCTTCACTTCTCTCCTCCTTGAATCTCCGCTGCCCACAACTTTTGAATCTTCGTTTGGTTAGAAATCAAGGTCCGGGTTTCCATCAAATCCCCGATTTTACTAAATATAGACTCAAACCAAATACTTCAAATCCTCAGCTTGTCACGACTGGGGCCAAATTCCGAGTGGCTATCCTCGTTCTGAGCCGATTCCCTAGTGCCCAAATGCTTGAAATCTCGATTTGAATCGGGCATTCCGATGCCCATTGCTCAAAGTCCATAGCTTGTTGTACCCGTTTCCTCGAGATCCTCAGTTTTGGGTTATATGATCTCCATCAATGCACCACATGGAACGCTTCTTTGTTTTAAATGCAGCTTTTGCAATGATTTAGGCAGATCAATGACTGCCAACCTGCGCGAAATCATTGGCTGTCTATATTTTAGGAGTAGTCTTCGTTGCCCAGTTACTGCTAGTCCTCATCATTAAAGCATTATCTCGGGTATTTTCTGCCTTCCCATAGGCCCTGTTCTCTGATCTGGTCTGGAGTTTCCCATCATCTGTAGACAGACCCAAAAGTATTATAAGCAGTAGACGCTAGTATAGAAAGTAAAAAATGGTTGCAGGAGGAAGGGAAGGAGGAAGGCCAGGATCCCCACCATCAAGAGTATCACAGGCCCAAGAGCAGGATCCCGAATCTCCCTCGCTGGGCAAGAGGCCGGGTCCCTGGCCACCCAGAGTGGGATTAGGCATGGAGCCTCAAAGAGCAGATGCGGATCACAGTCCGAAGGTTGTGGGCAATTGGGCTAAGAGAACTGGCTTCAGAAGCACAGCTTCATCTGAGAGCTTGCCCACTTATAGCACTGATGCAGAGATCGGCAATGCAGATTACGGTAAGCCTGCAGCCCCTCCTCCCCCACTCCCTAAGCCCCCAGGATATGCAAATAAAGCCAGGGCCTTCGATCTCGAGGCCGGTCCTCCTCCTGCTCCAACTACTTCGGCTGCTGCCACCAATGGAAATAGCCTTAATGTGAGGTTGAGTGAGAAAATAAAGAGACCACCAGCACAACAGCCACCTGATGCATTGCCCCCTGCTTCAACTCCTTCACCTTCTGTTGCCCCATCGGAAAGAAAGGGTTTAGATACTGATAAGAGCACCGTGGTGTTGCCGAAAAGCGGCCAAGCTAAGCCAGAACCGGTTAGAATCCAAAGGGAGCTTGAACCGGATCTTGTGTCACAGTCACAGGATGCAGATGAAGCGACAGTCAAGTCTTCTCACTTGAAATATGAGCTCAGGGAGACTCCTGGATTATTTTTTCTAATATTATATGCGATTCAACATTATCTATCTATCATAGGATCTTTAATCCTTATCCCGTTGGTGATTGTGCCTGCCATGAATGGAAGTAATGAAGATACAGCAAAGCTGGTGTCAACTGTGCTTCTACTCTCTGGCATCTCAACCCTTCTGCACTCCTTGTTTGGTTCGAGACTACCGTTGGTCCAGGGAGCCTCTTTTGTGTATCTTGCACCGGCTTTGACTATCATATTTTCCAATGAAGTGCCTGCTACGAGTAAAAATAGATTTAAGGACACGATGAGAGAGCTTCAGGGAGCAATGATTGTTGCGGCTATGTTTCAACTTATTGTAGGCTACAGTGGCCTAATGTCAGTGTTGCTTAGGATGATTAATCCTGTTGTGGTTGCTCCTACTGTGGCTGCTGTTGGGCTTGCCTTTTTCCCCTATGGTTTCACTGTGGTTGGAACTTGTGTGGAGATTGGGCTTCCTCAAATTAT

Ace file of the UniGene sp_v3.0_unigene830 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00860, Xan_ur_permease, Permease family	-	-	4.0e-23	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Nucleobase ascorbate transporter	-	-	9.039e-11	-

Source	Gene names
Sma3	At2g27810; At4g38050; At5g49990; F15K20.9; F20D10.170; GSVIVT00022084001; K9P8.13; NAT11; NAT12; NAT5; OsI_03815; OsI_04495; OsI_26048; OsJ_04128; OsJ_24297; P0460E08.15; P0512C01.3; PHYPADRAFT_112714; PHYPADRAFT_124037; PHYPADRAFT_131303; PHYPADRAFT_2345

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Xanthine/uracil permease	IPR006042	-	-
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27810.1	ATNAT12, NAT12 nucleobase-ascorbate transporter 12 chr2:11852338-11855988 FORWARD LENGTH=709	59%
RefSeq	Arabidopsis thaliana	NP_001077970.1	nucleobase-ascorbate transporter 12 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002313653.1	nucleobase ascorbate transporter [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: Distance to subject end: 330 aas, your sequence is shorter than subject: 393 - 524

Fln protein: MVAGGREGGRPGSPPSRVSQAQEQDPESPSLGKRPGPWPPRVGLGMEPQRADADHSPKVVGNWAKRTGFRSTASSESLPTYSTDAEIGNADYGKPAAPPPPLPKPPGYANKARAFDLEAGPPPAPTTSAAATNGNSLNVRLSEKIKRPPAQQPPDALPPASTPSPSVAPSERKGLDTDKSTVVLPKSGQAKPEPVRIQRELEPDLVSQSQDADEATVKSSHLKYELRETPGLFFLILYAIQHYLSIIGSLILIPLVIVPAMNGSNEDTAKLVSTVLLLSGISTLLHSLFGSRLPLVQGASFVYLAPALTIIFSNEVPATSKNRFKDTMRELQGAMIVAAMFQLIVGYSGLMSVLLRMINPVVVAPTVAAVGLAFFPYGFTVVGTCVEIGLPQI

Protein Length: 394

Fln nts: TGTTGAGTTGTTACCGTTTCTACTAGACAAGTTTGGACGACTGTGCCAAACAGGTCCTTGTCAGCGACTTAGCAGGGGCAGGATAGAGGAATTTTGGGTTCATGTAGGTAACTCACCAGCTTTCTAGCTTGATATAGCTTCACTCCTCTCAGCCCAGTCCTACATTCTTCTGCTGTGAATGCTCATTTCGTTGAAATGATTATTGGGTCCATCATTTGAGCAGAATCTCCTCTGCCCATTTGCTTCACTTCTCTCCTCCTTGAATCTCCGCTGCCCACAACTTTTGAATCTTCGTTTGGTTAGAAATCAAGGTCCGGGTTTCCATCAAATCCCCGATTTTACTAAATATAGACTCAAACCAAATACTTCAAATCCTCAGCTTGTCACGACTGGGGCCAAATTCCGAGTGGCTATCCTCGTTCTGAGCCGATTCCCTAGTGCCCAAATGCTTGAAATCTCGATTTGAATCGGGCATTCCGATGCCCATTGCTCAAAGTCCATAGCTTGTTGTACCCGTTTCCTCGAGATCCTCAGTTTTGGGTTATATGATCTCCATCAATGCACCACATGGAACGCTTCTTTGTTTTAAATGCAGCTTTTGCAATGATTTAGGCAGATCAATGACTGCCAACCTGCGCGAAATCATTGGCTGTCTATATTTTAGGAGTAGTCTTCGTTGCCCAGTTACTGCTAGTCCTCATCATTAAAGCATTATCTCGGGTATTTTCTGCCTTCCCATAGGCCCTGTTCTCTGATCTGGTCTGGAGTTTCCCATCATCTGTAGACAGACCCAAAAGTATTATAAGCAGTAGACGCTAGTATAGAAAGTAAAAA_-_ATGGTTGCAGGAGGAAGGGAAGGAGGAAGGCCAGGATCCCCACCATCAAGAGTATCACAGGCCCAAGAGCAGGATCCCGAATCTCCCTCGCTGGGCAAGAGGCCGGGTCCCTGGCCACCCAGAGTGGGATTAGGCATGGAGCCTCAAAGAGCAGATGCGGATCACAGTCCGAAGGTTGTGGGCAATTGGGCTAAGAGAACTGGCTTCAGAAGCACAGCTTCATCTGAGAGCTTGCCCACTTATAGCACTGATGCAGAGATCGGCAATGCAGATTACGGTAAGCCTGCAGCCCCTCCTCCCCCACTCCCTAAGCCCCCAGGATATGCAAATAAAGCCAGGGCCTTCGATCTCGAGGCCGGTCCTCCTCCTGCTCCAACTACTTCGGCTGCTGCCACCAATGGAAATAGCCTTAATGTGAGGTTGAGTGAGAAAATAAAGAGACCACCAGCACAACAGCCACCTGATGCATTGCCCCCTGCTTCAACTCCTTCACCTTCTGTTGCCCCATCGGAAAGAAAGGGTTTAGATACTGATAAGAGCACCGTGGTGTTGCCGAAAAGCGGCCAAGCTAAGCCAGAACCGGTTAGAATCCAAAGGGAGCTTGAACCGGATCTTGTGTCACAGTCACAGGATGCAGATGAAGCGACAGTCAAGTCTTCTCACTTGAAATATGAGCTCAGGGAGACTCCTGGATTATTTTTTCTAATATTATATGCGATTCAACATTATCTATCTATCATAGGATCTTTAATCCTTATCCCGTTGGTGATTGTGCCTGCCATGAATGGAAGTAATGAAGATACAGCAAAGCTGGTGTCAACTGTGCTTCTACTCTCTGGCATCTCAACCCTTCTGCACTCCTTGTTTGGTTCGAGACTACCGTTGGTCCAGGGAGCCTCTTTTGTGTATCTTGCACCGGCTTTGACTATCATATTTTCCAATGAAGTGCCTGCTACGAGTAAAAATAGATTTAAGGACACGATGAGAGAGCTTCAGGGAGCAATGATTGTTGCGGCTATGTTTCAACTTATTGTAGGCTACAGTGGCCTAATGTCAGTGTTGCTTAGGATGATTAATCCTGTTGTGGTTGCTCCTACTGTGGCTGCTGTTGGGCTTGCCTTTTTCCCCTATGGTTTCACTGTGGTTGGAACTTGTGTGGAGATTGGGCTTCCTCAAATTAT

Fln Alignment:

Contig830___LKYELRETPGLFFLILYAIQHYXXXXXXXXXXXXXXXPAMNGSNEDTAKLVSTVLLLSGISTLLHSLFGSRLPLVQGASFVYLAPALTIIFSNEVPATSKN--RFKDTMRELQGAMIVAAMFQLIVGYSGLMSVLLRMINXXXXXXXXXXVGLAFFPYGFTVVGTCVEIGLPQI
B8LQ21_____________LEYCIDSNPPWPETIILGFQHYILMLGTTVMVPTFLVPAMGGNDHDKVRVIQTLLFVAGINTLLQSLFGTRLPTVVGGSFAFIIPITSIINDSSLRSIPDDHQRFLHTMRAIQGALIASSSLQIILGYSQLWGIFSRFFSPLGMTPVIALVGLGLFERGFPGVGKCVEIGLPML

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
1011		50	50		1.0
1168	33	66			1.0
1228		50		50	1.0
1346		80	20		0.995493
1350	20			80	0.995493
1351		80	20		0.995493
1353		20		80	0.995493
1356	80		20		0.995493
1357	80		20		0.995493
1359	80	20			0.995493
1360	20			80	0.995493
1361	80	20			0.995493
1364	40	60			1.0
1365	80		20		0.995493
1388			75	25	0.996473
1421	25	75			0.996473
1426			25	75	0.996473
1427		25		75	0.996473
1428		25		75	0.996473
1431	75		25		0.996473
1432	75		25		0.996473
1433		75		25	0.996473
1434	75	25			0.996473
1436	75	25			0.996473
1439	75	25			0.996473
1530		16		83	0.994512
1538		16	83		0.994512
1705	50	50			1.0
1853		14	85		0.993533
1854		14		85	0.993533
1856			50	33	1.0
1857			83	16	0.994512
1858	50			33	1.0
1859	40	60			1.0
1860		20	20	60	0.99255
1861			60	40	1.0
1864	20		80		0.995493
1866	25			75	0.996473
1868	75	25			0.996473
1869		25	75		0.996473
1871	25		75		0.996473
1876		25	75		0.996473
1878	75	25			0.996473
1880	25	75			0.996473
1881		25		75	0.996473
1882	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain