SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene772

Length: 1830 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene772 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative ABC transporter, 5'-partial [Oryza sativa Japonica Group]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Sma3	Putative ABC transporter, 5'-partial	-	-	-

Source	Gene names
Sma3	OSJNBa0039O18.1;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	ATPase activity	GO:0016887	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65410.1	ATNAP11, TGD3, NAP11 non-intrinsic ABC protein 11 chr1:24295362-24297332 FORWARD LENGTH=345	76%
RefSeq	Arabidopsis thaliana	NP_564850.1	protein triGALACTOSYLDIACYLGLYCEROL 3 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002331770.1	predicted protein, partial [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF3

Fln msg: your sequence is longer than subject: 364 - 268

Fln protein: MAKFFTCPSSLHIPTSSSEVYSNWKSRALLSLPSDDSFRRQLRLNNGGEEGPVKRVICSSSAPSARRRWCNASSAISINHHDTSQFEEATMSRQLEDDSDVLIECRNVHKSFGEKHVLRGVSFQIRHGEAVGIIGPSGTGKSTILKIMAGLLAPDKGELYICGKKRHGLICDEEISGLRIGLVFQSAALFDSLTVRENVGFMLYEHSNLPKDRIAELVTESLEAVGLKGVEDRLPSELSGGMKKRVALARAIIYDDSHKAIKPEVVMYDEPTAGLDPIASTVVEDLIRAMHIKGRDAVGKPGKIASYIVVTHQHSTIRRAVDRLLFLHEGQIVWQGMTHEFDTSTNPIVRQFAAGSLEGPIKY*

Protein Length: 365

Fln nts: TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGACGGAATAGATGAACAGAAAGTCCAATGATCGGACTGTGAAAGAATTCGACACATTTTGCTTATGGCTAAATTTAAGAATCTCGTTCGATTTGGTACGGATTTGCTGATTTGCTAACAAAACAACATGGAACCATCGAAGGAAGCAATATAGATATAAAGCATTCGGTCATATGATTGCAGTGGCGGGGATGCATCAGCAATTACCCGAGAGATGAGAGGAGAAGCTACGGACATCTTTTCGTCATCTGCAGTGCAGACATTACTAATCCCAGACAGTCGATGCCCAATTCATAGCGTGGAGATTCAGTAACAGGAAGAAGCCGAAGAGAAGAAA_-_ATGGCGAAATTCTTTACTTGTCCTTCATCTCTGCATATACCCACGTCGTCCTCGGAGGTTTATTCTAATTGGAAATCACGCGCTCTGTTAAGCCTGCCATCTGATGACAGCTTTCGCAGGCAGTTGCGCCTGAACAACGGAGGGGAAGAAGGTCCTGTTAAACGGGTTATTTGTTCATCCTCTGCGCCTTCTGCGAGGAGGAGATGGTGCAACGCATCTTCGGCAATCTCCATTAACCATCATGATACATCACAATTTGAAGAGGCAACGATGAGCAGACAACTTGAGGATGACTCTGATGTGCTTATCGAGTGTAGAAACGTTCACAAGTCATTTGGGGAGAAGCACGTTCTGAGAGGAGTAAGCTTTCAGATTAGACATGGAGAAGCTGTTGGAATAATTGGACCTTCTGGCACTGGAAAGTCCACAATTCTTAAAATAATGGCAGGCCTTCTGGCTCCAGACAAGGGTGAACTATATATATGTGGGAAAAAACGACATGGCCTAATCTGTGATGAGGAAATATCAGGTTTACGAATTGGTCTGGTCTTTCAAAGTGCAGCACTCTTCGATTCACTTACGGTCCGGGAGAATGTTGGCTTTATGTTATATGAGCATTCTAACCTACCCAAGGATAGAATAGCTGAGCTTGTTACCGAAAGTCTAGAAGCTGTGGGCTTGAAGGGAGTAGAAGATCGGTTGCCATCAGAGTTGTCTGGAGGCATGAAAAAGCGAGTAGCATTGGCTCGGGCCATTATATATGATGATTCACATAAAGCAATTAAACCTGAAGTTGTAATGTATGATGAACCAACTGCTGGGCTTGATCCAATTGCATCCACTGTTGTCGAGGATCTTATCCGAGCAATGCACATTAAAGGACGTGATGCAGTGGGGAAACCTGGAAAGATTGCTTCGTATATTGTTGTAACCCATCAGCATAGCACAATAAGGCGAGCAGTTGACAGGCTGCTCTTCCTCCACGAAGGTCAGATAGTTTGGCAGGGTATGACACACGAGTTTGACACATCAACCAATCCCATTGTGCGACAGTTTGCAGCAGGGAGCTTGGAGGGACCTATTAAATACTAA___ACTAGTTATATGAAAAGTCTATTGTCAATAAAACTACCATCCTTACAAAATTGGTGGTCACGTACTCTATAGTGGTCTTCTGGTATTTGAAGACATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGGAGTAACAAATTTGTTCTGGTTATGATATATTGATTATCTTGACATCTCTCTTACAAACATACCGCAATGTTTGAGTTGGATGCTGTTCTATAAGATTGCAAACATGATGCTTAAATGGCTTCTGTAT

Fln Alignment:

Contig772___KSFGEKHVLRGVSFQIRHGEAVGIIGPSGTGKSTILKIMAGLLAPDKGELYICGKKRHGLI-CDEEISGLRIGLVFQSAALFDSLTVRENVGFMLYEHSNLPKDRIAELVTESL-EAVGLKGVEDRLPSE----LSGGMKKRVALARAIIYDDSHKAIKPEVVMYDEPTAGLDPIASTVVEDLIRAMHIKGRDAVGKPGKIASYIVVTHQHSTIRRAVDRLLFLHEGQIVWQGMTHEFDTSTNPIVRQF
D5ADF3_____________KSEEGRSLLSGVSVDIWKGTVVGVIGPSGSGKSTFLRALNRLWEPSADSVFL---DYHDITKLDVLALRRRVGMLFQTPALFDG-NVADNIKYG-------PALRGLKLSDEEVSKYLGWADLESSLASRSVGGLSVGQAQRVALARTL-------ANEPEVLLLDEPTSALDPISTQHIEESIGKL---------KRGKGMTIIMVSHSVKQIQRIADVVFLLVDGQIVETLKPDQLSNANHPMARMF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1458	11			88	0.923564
1546	43			56	1.0
1608		66	33		0.997452
1609	33			33	0.997753
1612		33	66		0.997452
1614	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain