SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene729

Length: 1589 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene729

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative tRNA/rRNA methyltransferase n=3 Tax=Oryza sativa RepID=Q5JKV8_ORYSJ	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	23%

Source	Gene names
Sma3	At2g19870; At2g19870/F6F22.10; CHLREDRAFT_187870; GSVIVT00016662001; MICPUN_62715; Os01g0742000; OsI_03687; OsJ_03406; Ot15g02390; P0439E07.12; PHATRDRAFT_15019; PHYPADRAFT_192080; POPTRDRAFT_584356; POPTRDRAFT_779377; RCOM_1049390; THAPSDRAFT_264345;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA methyltransferase activity	GO:0008173	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cecropin	IPR000875	-	-
Sma3	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	-
Sma3	RNA methyltransferase TrmH family	IPR004441	-	-
Sma3	RNA 2-O ribose methyltransferase, substrate binding	IPR013123	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G19870.1	tRNA/rRNA methyltransferase (SpoU) family protein chr2:8576034-8577803 FORWARD LENGTH=589	61%
RefSeq	Arabidopsis thaliana	NP_849992.1	tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002325029.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD60

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 29 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 406 - 327

Fln protein: MVESDGKRKKQFQRHRTELDGPDIGVYRPNREVDRPSIEDGEEDEDSEPVNDERWGRIKDSYRKMVKSHERRRPARAYENTSKEVRGIPKQHQDEWGRRQWTQVTGSSPPKMVGEAVYGVGPVLAALTIVRREFYALHVQEGLDLSSKNTKKKDKKGIEQVLQMAGNLGLAVKEASKHDLNMIVDSRPHQGLVLDASPLEMVNIKELEPISIHEGKNSPLWVALDEVTDPQNFGAVVRSAYFFGATGIVVCAKNSAPLSGVVSKASAGSLELIELRSCRNMMQFLESSMSNGWRVLGASVSKDAVPLNEVASGIPTILVLGSEGRGLRPLVSRSCSQLISIPGTLPHIAPRSADIGLSEEKLQGEEFSSLFQLESLNVSVAAGILLYHLIGPTGNLRFDKNHPLK*

Protein Length: 407

Fln nts: CTGGGATGACGCTGCAGACAGTTACTTTACAAAGCAGAACCCAACCAGGTATGATCATAAGCTTGAAAGCAGCCACAGTGCATTTGATAGGAATGAAAATGTAGGGAAGAAGCAATTTCAGATACCCAACATAGAATCCGACAGTCCGAATACTGAACTTAATAAAGCCAACAGAAAAGTTGATAGACCCAATGTAGACGTTACTGAAGAAGAAGAGGATTCGGAGCCTTCAAATGATGAGAGTTGGGGAAGAGTGAAGGAAAAGTTTAGAAAA_-_ATGGTAGAAAGTGATGGAAAAAGGAAGAAGCAATTCCAGAGACACAGAACAGAACTTGATGGTCCCGATATAGGAGTTTACAGACCAAATAGAGAAGTTGATAGACCCAGCATAGAAGATGGTGAAGAAGATGAGGATTCAGAGCCTGTAAATGATGAGAGGTGGGGAAGAATCAAGGACTCGTATAGGAAAATGGTAAAAAGTCACGAAAGAAGAAGACCCGCTAGGGCATATGAAAATACCTCAAAGGAAGTAAGAGGCATCCCGAAACAACATCAAGACGAGTGGGGGAGGAGACAGTGGACGCAAGTCACTGGTTCAAGCCCTCCCAAGATGGTGGGAGAGGCTGTTTATGGAGTTGGTCCTGTTTTGGCTGCCCTTACGATAGTGAGGAGGGAGTTCTATGCCCTTCATGTTCAGGAAGGCCTTGATCTGAGCAGTAAGAACACGAAAAAGAAGGACAAGAAGGGGATTGAACAAGTTTTGCAAATGGCAGGGAATCTTGGATTAGCTGTGAAAGAGGCCTCAAAGCATGACCTTAATATGATTGTGGACTCCAGGCCTCATCAGGGCCTTGTATTGGATGCTTCCCCATTGGAGATGGTGAACATAAAGGAATTGGAGCCCATTTCTATTCATGAAGGTAAGAACTCTCCTCTCTGGGTTGCTTTGGATGAAGTCACTGATCCTCAAAACTTTGGGGCTGTTGTCCGGTCCGCTTACTTTTTTGGAGCAACAGGAATAGTTGTGTGTGCTAAGAATTCAGCTCCCTTGAGTGGGGTAGTCAGCAAAGCCAGTGCAGGTTCGTTGGAACTGATTGAGCTTCGGTCCTGTCGGAATATGATGCAGTTTTTGGAATCCTCTATGAGCAATGGTTGGCGGGTTCTGGGTGCTTCTGTGTCTAAAGACGCAGTGCCTTTGAATGAGGTTGCATCAGGCATTCCAACAATACTAGTATTGGGCAGTGAAGGCAGAGGATTGAGACCTCTTGTGAGTAGATCTTGCTCCCAATTGATCAGTATACCAGGAACTCTTCCACATATTGCACCGAGATCTGCTGATATTGGTCTGAGCGAGGAAAAGCTTCAAGGTGAAGAATTTAGTAGTCTTTTCCAACTCGAAAGTTTGAATGTCAGTGTAGCAGCAGGTATACTGCTTTATCATTTGATTGGGCCCACTGGGAATTTAAGATTTGACAAGAACCATCCATTAAAATGAAAGTAATGCTATTGTTTAGTTACCTTGCAGATGATTTTTCTGTATTTTATGTTATCATTTGCTATCAATGTAATTGCATATTGCTGCTTCTTTTTGC

Fln Alignment:

Contig729___VLDASPLEMVNIKELEPISIHEGKNSPLWVALDEVTDPQNFGAVVRSAYFFGATGIVVCAKNSAPLSGVVSKASAGSLELIELRSCRNMMQFLESSMSNGWRVLGASVSKDAVPLNEVASGIPTILVLGSEGRGLRPLVSRSCSQLISIPGTLPHIAPRSADIGLSEEKLQGEEFSSLFQLESLNVSVAAGILLYHLI-------GPTGNLR
D5AD60_____________VLQALDPYIVETRKKKIREVVMNRTYSICLVVEGLTDFGNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSMGSEKWLDIEQWDNTWECFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPTAIVLGNEHRGISGEALKFSDIKCSIPMT--------------------------GMVDSFNVSVAAGIFMHAAVHDRISRMGSHGDLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain