SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene728

Length: 1114 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene728

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell attachment protein in somatic embryogenesis n=1 Tax=Daucus carota RepID=Q6I6Y6_DAUCA	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Apple-like	IPR003609	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRG3

Fln msg: your sequence is shorter than subject: 359 - 422

Fln protein: GNLLLSDVDGRVVWSTNTSNKGVVGIELRTNGNLVLYDQKNRTVWQSFDHPTDSLLVGQSLNIGGVKKLVSRVSDRDGSEGPYSLVMEAGGCALYASFPDPLPYLTLSFYDASLKDIYAITHTCKKPVSSITFLSDPEAENGFRQEMEMRLANFTAAPEFRAPELCNLISEETTTALYGFNIPRFNTTLSFLRLDSDGDLRMYTYSPDIELNTWDITYQRFGCWRGVPQCGLPRKCGGFGVCEKGQCVACPQIDGLKGWSTSCSPPSLPNCKDTSSNSSVDFYKLVGAEHFSSKYVNASRTGKTNLEECRRRCLNDCTCAAFFYWEESSACFHTQTVGTLNQLGNSTHLAFIKTVKTV*

Protein Length: 360

Fln nts: ACGGAAACCTCCTCCTCTCGGATGTAGATGGGCGCGTGGTTTGGTCCACAAACACTTCCAACAAGGGCGTCGTGGGAATCGAACTCCGGACCAACGGCAACCTGGTGCTCTATGACCAAAAAAACAGAACGGTGTGGCAGAGTTTCGATCACCCGACCGATAGTCTCTTAGTGGGGCAGTCACTGAACATTGGGGGCGTGAAGAAACTGGTGAGCCGCGTGTCGGACAGGGACGGATCGGAGGGCCCTTACAGTCTTGTAATGGAAGCCGGAGGATGCGCTCTGTATGCCAGCTTTCCGGACCCTCTGCCTTACTTGACTCTCAGCTTCTATGACGCGAGCTTAAAGGACATCTATGCCATCACGCACACCTGCAAGAAGCCGGTGAGTAGCATAACGTTCCTGAGCGATCCAGAAGCCGAGAATGGGTTTCGTCAGGAAATGGAGATGAGGTTGGCCAACTTCACTGCGGCACCAGAGTTCAGGGCACCGGAACTCTGCAACCTCATTTCTGAAGAAACCACCACGGCTCTCTATGGTTTCAACATCCCCAGATTTAACACTACTCTCTCCTTTCTGAGACTGGACTCCGATGGAGATCTGAGAATGTATACTTACTCGCCCGATATCGAACTGAATACCTGGGATATTACATACCAGCGATTTGGCTGTTGGCGAGGAGTGCCTCAGTGTGGTCTTCCGAGGAAATGTGGAGGATTTGGGGTTTGTGAGAAGGGTCAATGCGTGGCCTGCCCTCAAATCGATGGCTTGAAAGGTTGGTCTACTAGCTGCTCGCCCCCTTCCCTTCCAAACTGCAAAGATACTTCTTCCAATTCTTCTGTCGATTTCTATAAGCTGGTGGGAGCCGAGCATTTCTCCAGCAAATATGTGAATGCAAGCCGAACTGGAAAAACAAATTTGGAAGAGTGCAGGAGGAGGTGTTTGAACGATTGTACCTGCGCGGCATTCTTCTACTGGGAAGAGTCATCTGCGTGCTTTCACACCCAGACTGTGGGTACTCTCAACCAGCTTGGGAATAGCACGCACCTGGCATTCATCAAGACTGTCAAGACGGTTTAA___CTGTTCAATCACAACCTTCATTTACTGTATTCACA

Fln Alignment:

Contig728___GNLLLSDVDGRVVWSTNTSNKGVVGIELRTNGNLVLYDQKNRTVWQSFDHPTDSLLVGQSLNIGGVKKLVSRVSDRDGSEGPYSLVMEAGGCALYASFPDPLPYLTLSFYDASLKDIYAITHTCKKPVSSITFLSDPEAENGFRQEMEMRLANFTAAPEFRAPELCNLISEETTTALYGFNIPRFNTTLSFLRLDSDGDLRMYTYSPDIELNTWDITYQRFGCWRGVPQCGLPRKCGGFGVCEKGQCVACPQIDGLKGWSTSCSPPSLPNCKDTSSNSSVDFYKLVGAEHFSSKYVNASRTGKTNLEECRRRCLNDCTCAAFFYWEESSACFHTQTVGTLNQLGNSTHLAFIKTVKTV
B8LRG3_____________GNLLLSDADGRAVWSTNTSKKGVVGIELRNNGNLVLYDKKNKTVWQSFDHATDSLLVGQSLNIGGVKKLVSRVSDKDGSEGPYSLAMEAGGFALYASFPKPLPYWTLSFYEG-IKDIFAITHTCKKPVSSITFQSNTEAENGYSQMMEMRLANFTAPPELRAPELCKLTSDQTTSALYSFNTPRFNTTLSFLRLDSDGDLRMYTYSPGIEFNTWDITYQKFGCWRGVPVCGLPRKCGGFGVCEKGQCVACPEVDGFKGWSTNCSPPSLPNCKDASSNSSVDFYKVVGAEHFSSKYVNAERNGKTTLEECRRRCLNDCTCAAFFYWEESSACLNTQTVGTLTQLGNSTHLAFIKTVKKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain